A systematic study of the N-glycosylation sites of HIV-1 envelope protein on infectivity and antibody-mediated neutralization
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BACKGROUND: Glycans on the human immunodeficiency virus (HIV) envelope glycoprotein (Env) play an important role in viral infection and evasion of neutralization by antibodies. In this study, all 25 potential N-linked glycosylation sites (PNGS) on the HIV-1 CRF07_BC Env, FE, were mutated individually to study the effect of their removal on viral infectivity, virion production, and antibody-mediated neutralization. RESULTS: Removal of specific N-glycosylation sites has a significant effect on viral infectivity and antibody-mediated neutralization phenotype. Six of these glycosylation mutants located on the V1/V2 and C1/C2 domains lost infectivity. PNGS mutations located on V4/C4/V5 (except N392 on V4), were shown to increase viral infectivity. Furthermore, FE is much more dependent on specific glycans than clade B Env YU-2. On neutralization effect, PNGS mutations at N197 (C2), N301 (V3), N442 (C4) and N625 (gp41) rendered the virus more susceptible to neutralization by the monoclonal antibodies (MAbs) that recognize the CD4 binding site or gp41. Generally, mutations on V4/V5 loops, C2/C3/C4 regions and gp41 reduced the neutralization sensitivity to PG16. However, mutation of N289 (C2) made the virus more sensitive to both PG9 and PG16. Furthermore, we showed that mutations at N142 (V1), N355 (C3) and N463 (V5) conferred resistance to neutralization by anti-gp41 MAbs. We used the available structural information of HIV Env and homology modeling to provide a structural basis for the observed biological effects of these mutations. CONCLUSIONS: This report provides the first systematic experimental account of the biological role of the entire PNGS on an HIV-1 Env, which should provide valuable insights for understanding the function of Env in HIV infection cycle and for developing future anti-HIV strategies.
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HIV-1 Env contains ~25 glycosylation sites and forms a glycan shield protecting the virus from neutralizing antibodies; HTLV-1 Env contains only five sites for N-glycan attachment.
“Unlike HIV-1 Env, which contains ~25 glycosylation sites [101], and forms a “glycan shield” protecting the virus from neutralizing antibodies [102], HTLV-1 Env contains only five sites for N-glycan attachment [103].”
From HIV-1 and HTLV-1 Transmission Modes: Mechanisms and Importance for Virus Spread (2022) · cites this paper as [101]
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Kwong, P. D., Wyatt, R. T., Robinson, J. E., Sweet, R. W., Sodroski, J., & Hendrickson, W. A. (1998) · Nature · doi:10.1038/31405 · Cited by 2,963 · see citing works
Antibody neutralization and escape by HIV-1
Wei, X., Decker, J. M., Wang, S., Hui, H., Kappes, J. C., Wu, X., Salazar-Gonzalez, J. F., Salazar, M. G., Kilby, J. M., Saag, M. S., et al. (2003) · Nature · doi:10.1038/nature01470 · Cited by 2,421 · see citing works
Self-citationBroad and Potent Neutralizing Antibodies from an African Donor Reveal a New HIV-1 Vaccine Target
Walker, L., Phogat, S., Chan-hui, P., Wagner, D., Pham, P., Goss, J. L., Wrin, T., Simek, M., Fling, S., Mitcham, J., et al. (2009) · Science · doi:10.1126/science.1178746 · Cited by 1,849 · see citing works
Atomic structure of the ectodomain from HIV-1 gp41
Weissenhorn, W., Dessen, A., Harrison, S. C., Skehel, J. J., & Wiley, D. C. (1997) · Nature · doi:10.1038/387426a0 · Cited by 1,625 · see citing works
The HIV-1 Envelope Glycoproteins: Fusogens, Antigens, and Immunogens
Wyatt, R. T., & Sodroski, J. (1998) · Science · doi:10.1126/science.280.5371.1884 · Cited by 1,605 · see citing works
Structural Basis for Broad and Potent Neutralization of HIV-1 by Antibody VRC01
Zhou, T., Georgiev, I. S., Wu, X., Yang, Z., Dai, K., Finzi, A., Kwon, Y. D., Scheid, J. F., Shi, W., Xu, L., et al. (2010) · Science · doi:10.1126/science.1192819 · Cited by 1,132 · see citing works
Li, M., Gao, F., Mascola, J. R., Stamatatos, L., Polonis, V. R., Koutsoukos, M., Voss, G., Goepfert, P., Gilbert, P. B., Greene, K., et al. (2005) · Journal of Virology · doi:10.1128/jvi.79.16.10108-10125.2005 · Cited by 1,070 · see citing works
A conserved neutralizing epitope on gp41 of human immunodeficiency virus type 1
Muster, T., Steindl, F., Purtscher, M., Trkola, A., Klima, A., Himmler, G., Rüker, F., & Katinger, H. W. D. (1993) · Journal of Virology · doi:10.1128/jvi.67.11.6642-6647.1993 · Cited by 1,006 · see citing works
Leonard, C. K., Spellman, M. W., Riddle, L. M., Harris, R. J., Thomas, J. N., & Gregory, T. (1990) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)86956-3 · Cited by 986 · see citing works
Crystal Structure of a Neutralizing Human IgG Against HIV-1: A Template for Vaccine Design
Saphire, E., Parren, P., Pantophlet, R., Zwick, M., Morris, G., Rudd, P., Dwek, R., Stanfield, R., Burton, D., & Wilson, I. A. G. (2001) · Science · doi:10.1126/science.1061692 · Cited by 985 · see citing works
Structure of HIV-1 gp120 V1/V2 domain with broadly neutralizing antibody PG9
McLellan, J. S., Pancera, M., Carrico, C., Gorman, J., Julien, J.-P., Khayat, R., Louder, R., Pejchal, R., Sastry, M., Dai, K., et al. (2011) · Nature · doi:10.1038/nature10696 · Cited by 830 · see citing works
Molecular architecture of native HIV-1 gp120 trimers
Liu, J., Bartesaghi, A., Borgnia, M. J., Sapiro, G., & Subramaniam, S. (2008) · Nature · doi:10.1038/nature07159 · Cited by 815 · see citing works
Zwick, M. B., Labrijn, A. F., Wang, M., Spenlehauer, C., Saphire, E. O., Binley, J. Μ., Moore, J. P., Stiegler, G. M., Katinger, H. W. D., Burton, D. R., et al. (2001) · Journal of Virology · doi:10.1128/jvi.75.22.10892-10905.2001 · Cited by 797 · see citing works
Focused Evolution of HIV-1 Neutralizing Antibodies Revealed by Structures and Deep Sequencing
Wu, X., Zhou, T., Zhu, J., Zhang, B., Georgiev, I. S., Wang, C., Chen, X., Longo, N. S., Louder, M. K., McKee, K., et al. (2011) · Science · doi:10.1126/science.1207532 · Cited by 785 · see citing works
Self-citationStructural definition of a conserved neutralization epitope on HIV-1 gp120
Zhou, T., Xu, L., Dey, B., Hessell, A. J., Van Ryk, D., Xiang, S.-H., Yang, X., Zhang, M.-Y., Zwick, M. B., Arthos, J., et al. (2007) · Nature · doi:10.1038/nature05580 · Cited by 770 · see citing works
HIV vaccine design and the neutralizing antibody problem
Burton, D. R., Desrosiers, R. C., Doms, R. W., Koff, W. C., Kwong, P. D., Moore, J. P., Nabel, G. J., Sodroski, J., Wilson, I. A., & Wyatt, R. T. (2004) · Nature Immunology · doi:10.1038/ni0304-233 · Cited by 765 · see citing works
Structure of a V3-Containing HIV-1 gp120 Core
Huang, C.-C., Tang, M., Zhang, M.-Y., Majeed, S., Montabana, E. A., Stanfield, R. L., Dimitrov, D. S., Korber, B., Sodroski, J., Wilson, I. A., et al. (2005) · Science · doi:10.1126/science.1118398 · Cited by 731 · see citing works
Binley, J. Μ., Wrin, T., Korber, B., Zwick, M. B., Wang, M., Chappey, C., Stiegler, G. M., Kunert, R., Zolla‐Pazner, S., Katinger, H. W. D., et al. (2004) · Journal of Virology · doi:10.1128/jvi.78.23.13232-13252.2004 · Cited by 701 · see citing works
A Potent and Broad Neutralizing Antibody Recognizes and Penetrates the HIV Glycan Shield
Pejchal, R., Doores, K. J., Walker, L. M., Khayat, R., Huang, P.-S., Wang, S.-K., Stanfield, R. L., Julien, J.-P., Ramos, A., Crispin, M., et al. (2011) · Science · doi:10.1126/science.1213256 · Cited by 694 · see citing works
Self-citationScanlan, C. N., Pantophlet, R. A., Wormald, M. R., Saphire, E. O., Stanfield, R. L., Wilson, I. A., Katinger, H. W. D., Dwek, R. A., Rudd, P. M., & Burton, D. R. (2002) · Journal of Virology · doi:10.1128/jvi.76.14.7306-7321.2002 · Cited by 665 · see citing works
Björndal, Å. S., Deng, H., Jansson, M., Fiore, J. R., Colognesi, C., Karlsson, A., Albert, J., Scarlatti, G., Littman, D. R., & Fenyö, E. M. (1997) · Journal of Virology · doi:10.1128/jvi.71.10.7478-7487.1997 · Cited by 608 · see citing works
Marshall, R. (1972) · Annual Review of Biochemistry · doi:10.1146/annurev.bi.41.070172.003325 · Cited by 604 · see citing works
Sanders, R. W., Venturi, M., Schiffner, L., Kalyanaraman, R., Katinger, H. W. D., Lloyd, K. O., Kwong, P. D., & Moore, J. P. (2002) · Journal of Virology · doi:10.1128/jvi.76.14.7293-7305.2002 · Cited by 553 · see citing works
Atomic structure of a thermostable subdomain of HIV-1 gp41
Tan, K., Liu, J.-H., Wang, J., Shen, S. S., & Lu, M. (1997) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.94.23.12303 · Cited by 533 · see citing works
Structure of an unliganded simian immunodeficiency virus gp120 core
Chen, B., Vogan, E. M., Gong, H., Skehel, J. J., Wiley, D. C., & Harrison, S. C. (2005) · Nature · doi:10.1038/nature03327 · Cited by 520 · see citing works
Pancera, M., Majeed, S., Ban, Y. A., Chen, L., Huang, C.-C., Kong, L., Kwon, Y. D., Stuckey, J., Zhou, T., Robinson, J. E., et al. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0911004107 · Cited by 338 · see citing works
Helseth, E., Olshevsky, U., Furman, C., & Sodroski, J. (1991) · Journal of Virology · doi:10.1128/jvi.65.4.2119-2123.1991 · Cited by 292 · see citing works
Hartley, O., Klasse, P. J., Sattentau, Q. J., & Moore, J. P. (2005) · AIDS Research and Human Retroviruses · doi:10.1089/aid.2005.21.171 · Cited by 290 · see citing works
Crystal Structure of HIV-1 gp41 Including Both Fusion Peptide and Membrane Proximal External Regions
Buzón, V., Natrajan, G., Schibli, D. J., Campelo, F., Kozlov, M. M., & Weissenhorn, W. (2010) · PLoS Pathogens · doi:10.1371/journal.ppat.1000880 · Cited by 286 · see citing works
The Role of Human Immunodeficiency Virus Type 1 Envelope Glycoproteins in Virus Infection
Freed, E. O., & Martin, M. A. (1995) · Journal of Biological Chemistry · doi:10.1074/jbc.270.41.23883 · Cited by 274 · see citing works
Pantophlet, R. A., Saphire, E. O., Poignard, P., Parren, P. W. H. I., Wilson, I. A., & Burton, D. R. (2002) · Journal of Virology · doi:10.1128/jvi.77.1.642-658.2003 · Cited by 244 · see citing works
Pollakis, G. P., Kang, S., Kliphuis, A., Chalaby, M. I. M., Goudsmit, J., & Paxton, W. A. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.m009779200 · Cited by 234 · see citing works
A fusion-intermediate state of HIV-1 gp41 targeted by broadly neutralizing antibodies
Frey, G., Peng, H., Rits‐Volloch, S., Morelli, M. J., Cheng, Y., & Chen, B. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0800255105 · Cited by 221 · see citing works
Mechanism of Membrane Fusion by Viral Envelope Proteins
Harrison, S. C. (2005) · Advances in virus research · doi:10.1016/s0065-3527(05)64007-9 · Cited by 208 · see citing works
White, T., Bartesaghi, A., Borgnia, M. J., Meyerson, J. R., de la Cruz, M. J., Bess, J. W., Nandwani, R., Hoxie, J. A., Lifson, J. D., Milne, J. L. S., et al. (2010) · PLoS Pathogens · doi:10.1371/journal.ppat.1001249 · Cited by 167 · see citing works
Li, Y., Cleveland, B., Klots, I. N., Travis, B. M., Richardson, B. A., Anderson, D., Montefiori, D. C., Polacino, P. S., & Hu, S.-L. (2007) · Journal of Virology · doi:10.1128/jvi.01691-07 · Cited by 164 · see citing works
Kolchinsky, P., Kiprilov, E., Bartley, P., Rubinstein, R., & Sodroski, J. (2001) · Journal of Virology · doi:10.1128/jvi.75.7.3435-3443.2001 · Cited by 163 · see citing works
Harris, A. K., Borgnia, M. J., Shi, D., Bartesaghi, A., He, H., Pejchal, R., Kang, Y., Depetris, R. S., Marozsan, A. J., Sanders, R. W., et al. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1101414108 · Cited by 161 · see citing works
Rusert, P., Krarup, A., Magnus, C., Brandenberg, O. F., Weber, J., Ehlert, A.-K., Regoes, R. R., Günthard, H. F., & Trkola, A. (2011) · The Journal of Experimental Medicine · doi:10.1084/jem.20110196 · Cited by 106 · see citing works
Glycosylation Site-Specific Analysis of Clade C HIV-1 Envelope Proteins
Go, E. P., Chang, Q., Liao, H., Sutherland, L. L., Alam, S. M., Haynes, B. F., & Desaire, H. (2009) · Journal of Proteome Research · doi:10.1021/pr9002728 · Cited by 97 · see citing works
Thali, M., Furman, C., Helseth, E., Repke, H., & Sodroski, J. (1992) · Journal of Virology · doi:10.1128/jvi.66.9.5516-5524.1992 · Cited by 89 · see citing works
Ma, B.-J., Alam, S. M., Go, E. P., Lu, X., Desaire, H., Tomaras, G. D., Bowman, C. M., Sutherland, L. L., Scearce, R. M., Santra, S., et al. (2011) · PLoS Pathogens · doi:10.1371/journal.ppat.1002200 · Cited by 85 · see citing works
Shang, L., Yue, L., & Hunter, E. (2008) · Journal of Virology · doi:10.1128/jvi.02666-07 · Cited by 83 · see citing works
Bazán, H. A., Alkhatib, G., Broder, C. C., & Berger, E. A. (1998) · Journal of Virology · doi:10.1128/jvi.72.5.4485-4491.1998 · Cited by 82 · see citing works
Lavine, C. L., Lao, S., Montefiori, D. C., Haynes, B. F., Sodroski, J., & Yang, X. (2011) · Journal of Virology · doi:10.1128/jvi.06201-11 · Cited by 64 · see citing works
Glycan profiles of the 27 N-glycosylation sites of the HIV envelope protein CN54gp140
Pabst, M., Chang, M. W.-F., Stadlmann, J., & Altmann, F. (2012) · Biological Chemistry · doi:10.1515/hsz-2012-0148 · Cited by 63 · see citing works
Yang, X., Mahony, E. M., Holm, G. H., Kassa, A., & Sodroski, J. (2003) · Virology · doi:10.1016/s0042-6822(03)00273-3 · Cited by 58 · see citing works
Bhakta, S. J., Shang, L., Prince, J. L., Claiborne, D. T., & Hunter, E. (2011) · Retrovirology · doi:10.1186/1742-4690-8-37 · Cited by 51 · see citing works
Huang, X., Jin, W., Hu, K., Luo, S., Du, T., Griffin, G. E., Shattock, R. J., & Hu, Q. (2011) · Virology · doi:10.1016/j.virol.2011.11.023 · Cited by 49 · see citing works
Gp120 stability on HIV-1 virions and Gag-Env pseudovirions is enhanced by an uncleaved Gag core
Hammonds, J. E., Chen, X., Ding, L., FOUTS, T. R., Vico, A. L. D., Megede, J. Z., Barnett, S. W., & Spearman, P. W. (2003) · Virology · doi:10.1016/s0042-6822(03)00467-7 · Cited by 47 · see citing works
Self-citationStructure-based Vaccine Design in HIV: Blind Men and the Elephant?
Pejchal, R., & Wilson, I. A. (2010) · Current Pharmaceutical Design · doi:10.2174/138161210794079173 · Cited by 43 · see citing works
Utachee, P., Nakamura, S., Isarangkura-na-ayuthaya, P., Tokunaga, K., Sawanpanyalert, P., Ikuta, K., Auwanit, W., & Kameoka, M. (2010) · Journal of Virology · doi:10.1128/jvi.02619-09 · Cited by 40 · see citing works
Improving immunogenicity of HIV-1 envelope gp120 by glycan removal and immune complex formation
Kumar, R., Tuen, M., Li, H., Tse, D. B., & Hioe, C. E. (2011) · Vaccine · doi:10.1016/j.vaccine.2011.09.057 · Cited by 36 · see citing works
Genetic and Neutralization Properties of HIV-1 env Clones From Subtype B/BC/AE Infections in China
Chong, H., Hong, K., Zhang, C., Nie, J., Song, A., Kong, W., & Wang, Y. (2008) · JAIDS Journal of Acquired Immune Deficiency Syndromes · doi:10.1097/qai.0b013e3181663967 · Cited by 35 · see citing works
Self-citationRole of the HIV gp120 Conserved Domain 1 in Processing and Viral Entry
Wang, J., Sen, J., Rong, L., & Caffrey, M. S. (2008) · Journal of Biological Chemistry · doi:10.1074/jbc.m806099200 · Cited by 32 · see citing works
The Highly Conserved Glycan at Asparagine 260 of HIV-1 gp120 Is Indispensable for Viral Entry
François, K. O., & Balzarini, J. M. (2011) · Journal of Biological Chemistry · doi:10.1074/jbc.m111.274456 · Cited by 30 · see citing works
Role of the HIV gp120 Conserved Domain 5 in Processing and Viral Entry
Sen, J., Jacobs, A., & Caffrey, M. S. (2008) · Biochemistry · doi:10.1021/bi800227z · Cited by 28 · see citing works
Leavitt, M. G., Park, E. J., Sidorov, I. A., Dimitrov, D. S., & Quinnan, G. V. (2002) · Journal of Virology · doi:10.1128/jvi.77.1.560-570.2003 · Cited by 23 · see citing works
Nie, J., Zhang, C., Liu, W. Y., Wu, X., Li, F., Wang, S., Liang, F., Song, A., & Wang, Y. (2010) · JAIDS Journal of Acquired Immune Deficiency Syndromes · doi:10.1097/qai.0b013e3181cb8300 · Cited by 20 · see citing works
Self-citationWang, S., Nie, J., & Wang, Y. (2010) · Virus Research · doi:10.1016/j.virusres.2010.09.012 · Cited by 17 · see citing works
Self-citationImproving immunogenicity of HIV-1 envelope gp120 by glycan removal and immune complex formation
Kumar, R., Tuen, M., Li, H., Tse, D., & Hioe, C. (2012) · Retrovirology · doi:10.1186/1742-4690-9-s2-p292 · Cited by 16 · see citing works
HIV gp120 V1/V2 and C2-V3 domains glycoprotein compatibility is required for viral replication
Chen, M., Shi, C., Kalia, V., Tencza, S. B., Montelaro, R. C., & Gupta, P. (2001) · Virus Research · doi:10.1016/s0168-1702(01)00322-7 · Cited by 14 · see citing works
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- Chen M Shi C Kalia V Tencza SB Montelaro RC Gupta P HIV gp120 V(1)/V(2) and C(2)-V(3) domains glycoprotein compatibility is required for viral replication Virus Res 2001 79 91 101 11551649
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Li, Q., Wu, J., Nie, J., Zhang, L., Hao, H., Liu, S., Zhao, C., Zhang, Q., Liu, H., Nie, L., et al. (2020) · Cell · doi:10.1016/j.cell.2020.07.012 · Cited by 1,420 · see citing works
Self-citationCryo-EM Structure of a Fully Glycosylated Soluble Cleaved HIV-1 Envelope Trimer
Lyumkis, D., Julien, J., de Val, N., Cupo, A., Potter, C. S., Klasse, P.-J., Burton, D. R., Sanders, R. W., Moore, J. P., Carragher, B. O., et al. (2013) · Science · doi:10.1126/science.1245627 · Cited by 669 · see citing works
Exploitation of glycosylation in enveloped virus pathobiology
Watanabe, Y., Bowden, T. A., Wilson, I. A., & Crispin, M. (2019) · Biochimica et Biophysica Acta (BBA) - General Subjects · doi:10.1016/j.bbagen.2019.05.012 · Cited by 485 · see citing works
SARS-CoV-2 escape from a highly neutralizing COVID-19 convalescent plasma
Andreano, E., Piccini, G., Licastro, D., Casalino, L., Johnson, N., Paciello, I., Monego, S. D., Pantano, E., Manganaro, N., Manenti, A., et al. (2021) · Proceedings of the National Academy of Sciences of the United States of America · doi:10.1073/pnas.2103154118 · Cited by 187 · see citing works
SARS-CoV-2 escape <i>in vitro</i> from a highly neutralizing COVID-19 convalescent plasma
Andreano, E., Piccini, G., Licastro, D., Casalino, L., Johnson, N. V., Paciello, I., Monego, S. D., Pantano, E., Manganaro, N., Manenti, A., et al. (2020) · doi:10.1101/2020.12.28.424451
“The introduction of a glycan is a well-known immunogenic escape strategy described in influenza (29), HIV-1 and other viruses (30-32), although to our knowledge this finding presents the first patient-derived escape mutant utilizing this mechanism for SARS-CoV-2.”
Global aspects of viral glycosylation
Bagdonaite, I., & Wandall, H. H. (2018) · Glycobiology · doi:10.1093/glycob/cwy021 · Cited by 234 · see citing works
Current status on the development of pseudoviruses for enveloped viruses
Li, Q., Liu, Q., Huang, W., Li, X., & Wang, Y. (2017) · Reviews in Medical Virology · doi:10.1002/rmv.1963 · Cited by 167 · see citing works
Self-citationThe Importance of Glycans of Viral and Host Proteins in Enveloped Virus Infection
Li, Y., Liu, D., Wang, Y., Su, W., Liu, G., & Dong, W. (2021) · Frontiers in Immunology · doi:10.3389/fimmu.2021.638573 · Cited by 134 · see citing works
Self-citationThe HIV glycan shield as a target for broadly neutralizing antibodies
Doores, K. J. (2015) · FEBS Journal · doi:10.1111/febs.13530 · Cited by 131 · see citing works
Pritchard, L. K., Spencer, D. I. R., Royle, L., Bonomelli, C., Seabright, G. E., Behrens, A., Kulp, D. W., Menis, S., Krumm, S. A., Dunlop, D. C., et al. (2015) · Nature Communications · doi:10.1038/ncomms8479 · Cited by 125 · see citing works
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Shivatare, S. S., Chang, S., Tsai, T.-I., Tseng, S. Y., Shivatare, V. S., Lin, Y., Cheng, Y., Ren, C., Lee, C.-C. D., Pawar, S., et al. (2016) · Nature Chemistry · doi:10.1038/nchem.2463 · Cited by 122 · see citing works
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Haddox, H. K., Dingens, A. S., & Bloom, J. D. (2016) · PLoS Pathogens · doi:10.1371/journal.ppat.1006114 · Cited by 88 · see citing works
Liu, Q., Fan, C., Li, Q., Zhou, S., Huang, W., Wang, L., Sun, C., Wang, M., Wu, X., Ma, J., et al. (2017) · Scientific Reports · doi:10.1038/srep45552 · Cited by 87 · see citing works
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Berndsen, Z. T., Chakraborty, S., Wang, X., Cottrell, C. A., Torres, J. L., Diedrich, J. K., López, C. A., Yates, J. R., van Gils, M. J., Paulson, J. C., et al. (2020) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2000260117 · Cited by 86 · see citing works
McCoy, L. E., Falkowska, E., Doores, K. J., Le, K. M., Sok, D., van Gils, M. J., Euler, Z., Burger, J. A., Seaman, M. S., Sanders, R. W., et al. (2015) · PLoS Pathogens · doi:10.1371/journal.ppat.1005110 · Cited by 86 · see citing works
Xiang, Q., Li, L., Wu, J., Tian, M., & Fu, Y. (2022) · Microbiological Research · doi:10.1016/j.micres.2022.126993 · Cited by 74 · see citing works
Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM
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HIV-1 and HTLV-1 Transmission Modes: Mechanisms and Importance for Virus Spread
Kalinichenko, S., Komkov, D., & Mazurov, D. (2022) · Viruses · doi:10.3390/v14010152 · Cited by 68 · see citing works
“Unlike HIV-1 Env, which contains ~25 glycosylation sites [101], and forms a “glycan shield” protecting the virus from neutralizing antibodies [102], HTLV-1 Env contains only five sites for N-glycan attachment [103].”
BackgroundBagdonaite, I., Nordén, R., Joshi, H. J., King, S. L., Vakhrushev, S. Y., Olofsson, S., & Wandall, H. H. (2016) · Journal of Biological Chemistry · doi:10.1074/jbc.m116.721746 · Cited by 68 · see citing works
Wibmer, C. K., Gorman, J., Ozorowski, G., Bhiman, J. N., Sheward, D. J., Elliott, D. H., Rouelle, J. A., Smira, A. R., Joyce, M. G., Ndabambi, N., et al. (2017) · PLoS Pathogens · doi:10.1371/journal.ppat.1006074 · Cited by 64 · see citing works
Bagdonaite, I., Nordén, R., Joshi, H. J., Dabelsteen, S., Nyström, K., Vakhrushev, S. Y., Olofsson, S., & Wandall, H. H. (2015) · PLoS Pathogens · doi:10.1371/journal.ppat.1004784 · Cited by 56 · see citing works
The external domains of the HIV-1 envelope are a mutational cold spot
Geller, R., Domingo‐Calap, P., Cuevas, J. M., Rossolillo, P., Negroni, M., & Sanjuán, R. (2015) · Nature Communications · doi:10.1038/ncomms9571 · Cited by 55 · see citing works
Seabright, G. E., Cottrell, C. A., van Gils, M. J., D’Addabbo, A., Harvey, D. J., Behrens, A., Allen, J. D., Watanabe, Y., Scaringi, N., Polveroni, T. M., et al. (2020) · Structure · doi:10.1016/j.str.2020.04.022 · Cited by 52 · see citing works
Wang, W., Li, Q., Wu, J., Hu, Y., Wu, G., Yu, C., Xu, K., Liu, X., Wang, Q., Huang, W., et al. (2021) · Emerging Microbes & Infections · doi:10.1080/22221751.2021.1957720 · Cited by 49 · see citing works
Self-citationBalla-Jhagjhoorsingh, S. S., Corti, D., Heyndríckx, L., Willems, E., Vereecken, K., Davis, D. A., & Vanham, G. L. (2013) · PLoS ONE · doi:10.1371/journal.pone.0068863 · Cited by 46 · see citing works
Strategies to induce broadly protective antibody responses to viral glycoproteins
Krammer, F. (2017) · Expert Review of Vaccines · doi:10.1080/14760584.2017.1299576 · Cited by 41 · see citing works
Conformational Evaluation of HIV-1 Trimeric Envelope Glycoproteins Using a Cell-based ELISA Assay
Veillette, M., Coutu, M., Richard, J., Batraville, L.-A., Désormeaux, A., Roger, M., & Finzi, A. (2014) · Journal of Visualized Experiments · doi:10.3791/51995 · Cited by 40 · see citing works
Raška, M., Czerneková, L., Moldoveanu, Z., Zachová, K., Elliott, M. C., Novák, Z., Hall, S. D., Höelscher, M., Maboko, L., Brown, R., et al. (2014) · AIDS Research and Therapy · doi:10.1186/1742-6405-11-23 · Cited by 35 · see citing works
Beauparlant, D., Rusert, P., Magnus, C., Kadelka, C., Weber, J., Uhr, T., Zagordi, O., Oberle, C. S., Duenas-Decamp, M. J., Clapham, P. R., et al. (2017) · PLoS Pathogens · doi:10.1371/journal.ppat.1006255 · Cited by 35 · see citing works
Mathys, L., François, K. O., Quandte, M., Braakman, I., & Balzarini, J. M. (2014) · PLoS ONE · doi:10.1371/journal.pone.0101181 · Cited by 31 · see citing works
Rathore, U., Saha, P., Kesavardhana, S., Kumar, A. A., Datta, R., Sankar, D. S., Das, R., Mascola, J. R., & Varadarajan, R. (2017) · Journal of Biological Chemistry · doi:10.1074/jbc.m117.788919 · Cited by 31 · see citing works
Viral glycoproteomes: technologies for characterization and outlook for vaccine design
Bagdonaite, I., Vakhrushev, S., Joshi, H., & Wandall, H. (2018) · FEBS Letters · doi:10.1002/1873-3468.13177 · Cited by 29 · see citing works
Leemans, A., Boeren, M., der Gucht, W. V., Martinet, W., Caljon, G., Maes, L. J. R. M., Cos, P., & Delputte, P. (2019) · Virus Research · doi:10.1016/j.virusres.2019.04.006 · Cited by 30 · see citing works
Rasheed, M., Bettadapura, R., & Bajaj, C. (2015) · Structure · doi:10.1016/j.str.2015.03.026 · Cited by 30 · see citing works
Antigenic variations of recent street rabies virus
Wang, W., Ma, J., Nie, J., Li, J., Cao, S., Wang, L., Yu, C., Huang, W., Li, Y., Yu, Y., et al. (2019) · Emerging Microbes & Infections · doi:10.1080/22221751.2019.1683436 · Cited by 28 · see citing works
Self-citationEsmaeilzadeh, E., Etemad, B., Lavine, C. L., Garneau, L., Li, Y., Regan, J., Wong, C., Sharaf, R. R., Connick, E., Volberding, P. A., et al. (2023) · Science Translational Medicine · doi:10.1126/scitranslmed.abq4490 · Cited by 28 · see citing works
Yen, P.-J., Herschhorn, A., Haim, H., Salas, I., Gu, C., Sodroski, J., & Gabuzda, D. H. (2014) · Journal of Virology · doi:10.1128/jvi.02785-13 · Cited by 28 · see citing works
Arms Race between Enveloped Viruses and the Host ERAD Machinery
Frabutt, D. A., & Zheng, Y. (2016) · Viruses · doi:10.3390/v8090255 · Cited by 27 · see citing works
Synthetic Carbohydrate Chemistry and Translational Medicine
Shivatare, S. S., & Wong, C. (2020) · The Journal of Organic Chemistry · doi:10.1021/acs.joc.0c01834 · Cited by 28 · see citing works
Liang, Y., Guttman, M., Williams, J. A., Verkerke, H., Alvarado, D., Hu, S.-L., & Lee, K. K. (2016) · Journal of Virology · doi:10.1128/jvi.01116-16 · Cited by 27 · see citing works
Bioinformatic Analysis of HIV-1 Entry and Pathogenesis
Aiamkitsumrit, B., Dampier, W., Antell, G. C., Rivera, N., Martín‐García, J., Pirrone, V., Nonnemacher, M. R., & Wigdahl, B. L. (2014) · Current HIV Research · doi:10.2174/1570162x12666140526121746 · Cited by 27 · see citing works
Pseudoviruses, a safer toolbox for vaccine development against enveloped viruses
Thimmiraju, S. R., Kimata, J. T., & Pollet, J. B. K. (2024) · Expert Review of Vaccines · doi:10.1080/14760584.2023.2299380 · Cited by 24 · see citing works
HIV-1 Envelope Glycan Moieties Modulate HIV-1 Transmission
Shen, R., Raška, M., Bimczok, D., Novák, J., & Smith, P. D. (2014) · Journal of Virology · doi:10.1128/jvi.02164-14 · Cited by 23 · see citing works
Defining HIV-1 Envelope N-Glycan Microdomains through Site-Specific Heterogeneity Profiles
Hargett, A. A., Wei, Q., Knoppová, B., Hall, S. D., Huang, Z., Prakash, A., Green, T. J., Moldoveanu, Z., Raška, M., Novák, J., et al. (2018) · Journal of Virology · doi:10.1128/jvi.01177-18 · Cited by 22 · see citing works
Glycosylation profiling to evaluate glycoprotein immunogens against HIV-1
Behrens, A., Struwe, W. B., & Crispin, M. (2017) · Expert Review of Proteomics · doi:10.1080/14789450.2017.1376658 · Cited by 22 · see citing works
Zheng, L., Ma, Y., Chen, M., Wu, G., Yan, C., & Zhang, X. (2021) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2021.09.053 · Cited by 21 · see citing works
Mathys, L., & Balzarini, J. M. (2015) · PLoS ONE · doi:10.1371/journal.pone.0130621 · Cited by 21 · see citing works
HIV-1 pseudoviruses constructed in China regulatory laboratory
Nie, J., Huang, W., Liu, Q., & Wang, Y. (2019) · Emerging Microbes & Infections · doi:10.1080/22221751.2019.1702479 · Cited by 20 · see citing works
Self-citationSchorcht, A., Cottrell, C. A., Pugach, P., Ringe, R. P., Han, A. X., Allen, J. D., van den Kerkhof, T. L. G. M., Seabright, G. E., Schermer, E. E., Ketas, T. J., et al. (2021) · Journal of Virology · doi:10.1128/jvi.01552-21 · Cited by 20 · see citing works
Heredia, J. D., Park, J., Choi, H. S. J., Gill, K. S., & Procko, E. (2019) · Journal of Virology · doi:10.1128/jvi.00219-19 · Cited by 19 · see citing works
Glycosylation of ALV-J Envelope Protein at Sites 17 and 193 Is Pivotal in the Virus Infection
Xu, M., Qian, K., Shao, H., Yao, Y., Nair, V., Ye, J., & Qin, A. (2021) · Journal of Virology · doi:10.1128/jvi.01549-21 · Cited by 18 · see citing works
Mannose-specific plant and microbial lectins as antiviral agents: A review
Gupta, A., Yadav, K., Yadav, A., Ahmad, R., Srivastava, A., Kumar, D., Khan, M. A., & Dwivedi, U. N. (2024) · Glycoconjugate Journal · doi:10.1007/s10719-023-10142-7 · Cited by 18 · see citing works
Ferreira, R.-C., Grant, O. C., Moyo-Gwete, T., Dorfman, J. R., Woods, R. J., Travers, S. A. A., & Wood, N. T. (2018) · Scientific Reports · doi:10.1038/s41598-018-33390-2 · Cited by 17 · see citing works
Olech, M., & Kuźmak, J. M. (2021) · Viruses · doi:10.3390/v13122529 · Cited by 17 · see citing works
Wang, W., Zirkle, B., Nie, J., Ma, J., Gao, K., Chen, X. S., Huang, W., Kong, W., & Wang, Y. (2015) · JAIDS Journal of Acquired Immune Deficiency Syndromes · doi:10.1097/qai.0000000000000595 · Cited by 16 · see citing works
Self-citationHIV-1 Entry and Prospects for Protecting against Infection
Bruxelle, J.-F., Trattnig, N., Mureithi, M., Landais, E., & Pantophlet, R. A. (2021) · Microorganisms · doi:10.3390/microorganisms9020228 · Cited by 16 · see citing works
Kaulfuß, M., Wensing, I., Windmann, S., Hrycak, C. P., & Bayer, W. (2017) · Retrovirology · doi:10.1186/s12977-017-0336-7 · Cited by 14 · see citing works
Antibody Responses Elicited by Immunization with BG505 Trimer Immune Complexes
Gach, J. S., Mara, K. J. V., LaBranche, C. C., van Gils, M. J., McCoy, L. E., Klasse, P. J., Montefiori, D. C., Sanders, R. W., Moore, J. P., & Forthal, D. N. (2019) · Journal of Virology · doi:10.1128/jvi.01188-19 · Cited by 14 · see citing works
Aiamkitsumrit, B., Sullivan, N. T., Nonnemacher, M. R., Pirrone, V., & Wigdahl, B. L. (2015) · Advances in virus research · doi:10.1016/bs.aivir.2015.04.001 · Cited by 14 · see citing works
Nogal, B., Bowman, C. A., & Ward, A. B. (2017) · Journal of Biological Chemistry · doi:10.1074/jbc.m117.808352 · Cited by 13 · see citing works
Xu, J. C., Zhang, P., Kusakabe, T., Mon, H., Li, Z., Zhu, L., Iiyama, K., Banno, Y., Morokuma, D., & Lee, J. M. (2015) · Comparative Biochemistry and Physiology Part D Genomics and Proteomics · doi:10.1016/j.cbd.2015.07.003 · Cited by 13 · see citing works
Kumar, R., Pan, R., Upadhyay, C., Mayr, L. M., Cohen, S., Wang, X.-H., Balasubramanian, P., Nadas, A. J., Seaman, M. S., Zolla‐Pazner, S., et al. (2015) · Journal of Virology · doi:10.1128/jvi.01280-15 · Cited by 12 · see citing works
Hikichi, Y., Yokoyama, M., Takemura, T., Fujino, M., Kumakura, S., Maeda, Y., Yamamoto, N., Sato, H., Matano, T., & Murakami, T. (2016) · Journal of General Virology · doi:10.1099/jgv.0.000536 · Cited by 11 · see citing works
Glycan Positioning Impacts HIV-1 Env Glycan-Shield Density, Function, and Recognition by Antibodies
Wei, Q., Hargett, A. A., Knoppová, B., Duverger, A. E., Rawi, R., Shen, C., Farney, S. K., Hall, S. D., Brown, R., Keele, B. F., et al. (2020) · iScience · doi:10.1016/j.isci.2020.101711 · Cited by 11 · see citing works
Va, M., & Morozov, A. V. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms222212398 · Cited by 11 · see citing works
Mathys, L., & Balzarini, J. M. (2014) · Retrovirology · doi:10.1186/preaccept-5732415801310430 · Cited by 11 · see citing works
HIV-1 Entry Mechanisms: Protein-Host Receptor Interactions and Membrane Fusion Dynamics
Elalouf, A., Elalouf, H., & Maoz, H. (2025) · Frontiers in Bioscience-Landmark · doi:10.31083/fbl37412 · Cited by 11 · see citing works
Liang, S. A., Ratnayake, P. U., Keinath, C., Jia, L., Wolfe, R., Ranaweera, A., & Weliky, D. P. (2018) · Biochemistry · doi:10.1021/acs.biochem.7b00753 · Cited by 10 · see citing works
Beltrán-Pavez, C., Ferreira, C. B., Merino-Mansilla, A., Fabra-García, A., Casadellà, M., Noguera-Julián, M., Paredes, R., Olvera, À., Haro, I., Brander, C., et al. (2018) · PLoS ONE · doi:10.1371/journal.pone.0208345 · Cited by 9 · see citing works
Bauer, A. P., Podola, L., Mann, P., Missanga, M., Haule, A., Sudi, L., Nilsson, C., Kaluwa, B., Lueer, C., Mwakatima, M., et al. (2017) · Journal of Virology · doi:10.1128/jvi.00730-17 · Cited by 9 · see citing works
Radford, C. E., & Bloom, J. D. (2025) · Journal of Virology · doi:10.1128/jvi.00195-25 · Cited by 8 · see citing works
Wang, S., Li, W., Wen, J., Wang, L., Tiwari, S. K., Bray, W., Wu, L., Li, N., Hui, H., Clark, A. E., et al. (2025) · mBio · doi:10.1128/mbio.02930-25 · Cited by 8 · see citing works
Self-citationGlycosylation in viral hepatitis
Gruszewska, E., Grytczuk, A., & Chrostek, L. (2021) · Biochimica et Biophysica Acta (BBA) - General Subjects · doi:10.1016/j.bbagen.2021.129997 · Cited by 8 · see citing works
Mullins, J. I., Deng, W., Giorgi, E. E., Magaret, C. A., Rolland, M., Tanmoy Bhattacharya, A., Westfall, D. H., Yssel, A., Bumgarner, R. E., Murrell, B., et al. (2026) · Nature Communications · doi:10.1038/s41467-026-73496-0 · Cited by 7 · see citing works
Glycan Nanostructures of Human Coronaviruses
Guo, W., Lakshminarayanan, H., Rodriguez‐Palacios, A., Salata, R. A., Xu, K., & Draz, M. S. (2021) · International Journal of Nanomedicine · doi:10.2147/ijn.s302516 · Cited by 7 · see citing works
Pseudotyped Viruses for Retroviruses
Solomon, M., & Liang, C. (2023) · Advances in experimental medicine and biology · doi:10.1007/978-981-99-0113-5_4 · Cited by 7 · see citing works
Zhao, J., Song, E., Huang, Y., Yu, A., & Mechref, Y. S. (2021) · Journal of Proteome Research · doi:10.1021/acs.jproteome.1c00587 · Cited by 7 · see citing works
Kitawi, R. C., W., H., Aman, R. A., Ogutu, B. R., Muigai, A. W. T., Kokwaro, G. O., & Ochieng, W. (2017) · Virology Journal · doi:10.1186/s12985-017-0703-y · Cited by 6 · see citing works
Huang, J., Wang, H., Chen, Y., Wang, P.-S., Lin, S.-J., Chang, Y.-S., Liu, K.-F., & Lo, C. (2020) · Developmental & Comparative Immunology · doi:10.1016/j.dci.2020.103667 · Cited by 6 · see citing works
Ding, C., Patel, D., Ma, Y., Mann, J. F. S., Wu, J., & Gao, Y. (2021) · Frontiers in Immunology · doi:10.3389/fimmu.2021.697683 · Cited by 6 · see citing works
Maphumulo, N. F., & Gordon, M. L. (2024) · Frontiers in Microbiology · doi:10.3389/fmicb.2024.1388729 · Cited by 5 · see citing works
Envelope Gene Evolution and HIV-1 Neuropathogenesis
Vázquez-Santiago, F. J., & Rivera‐Amill, V. (2015) · Journal of Neuroinfectious Diseases · doi:10.4172/2314-7326.s2-003 · Cited by 5 · see citing works
Zhuang, M., Vassell, R. A., Chen, Y., Keller, P. W., Ling, H., Wang, W., & Weiss, C. D. (2019) · Journal of Virology · doi:10.1128/jvi.00142-19 · Cited by 4 · see citing works
Self-citationN-Glycans Modulate HIV-1 Env Conformational PlasticityPreprint
Shehata, M., Casalino, L., Duquette, M., Chen, S., Flaherty, A., Villa, E., & Amaro, R. E. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.03.26.645577 · Cited by 4 · see citing works
Variability OF HIV-1 V2 env domain for integrin binding: Clinical correlates
Fabrizio, C., Bavaro, D. F., Scudeller, L., Lepore, L., Balena, F., Lagioia, A., Angarano, G., Monno, L., & Saracino, A. (2019) · Virology · doi:10.1016/j.virol.2019.07.019 · Cited by 3 · see citing works
Differential selection in HIV-1 gp120 between subtype B and East Asian variant B’
Dang, S., Wang, Y., Budeus, B., Verheyen, J., Yang, R., & Hoffmann, D. E. (2014) · Virologica Sinica · doi:10.1007/s12250-014-3389-y · Cited by 3 · see citing works
Self-citationWang, H., Yang, L., Li, Y., Li, B., Zhu, X., Yan, D., Li, M., Wu, W., Sun, M., & Yang, R. (2021) · Virus Research · doi:10.1016/j.virusres.2021.198424 · Cited by 3 · see citing works
Zhang, D., Liu, Z., Wang, W., Chen, M., Hou, J., Zhang, Z., Ren, W., Ren, L., & Hao, Y. (2022) · Molecular Immunology · doi:10.1016/j.molimm.2022.02.021 · Cited by 3 · see citing works
Self-citationNatural infection as a blueprint for rational HIV vaccine design
van Haaren, M. M., van den Kerkhof, T. L. G. M., & van Gils, M. J. (2016) · Human Vaccines & Immunotherapeutics · doi:10.1080/21645515.2016.1232785 · Cited by 3 · see citing works
de Azevedo, S. S. D., Côrtes, F. H., Villela, L. M., Hoagland, B., Grinsztejn, B. G. J., Veloso, V. G., Morgado, M. G., & Bello, G. (2023) · Memórias do Instituto Oswaldo Cruz · doi:10.1590/0074-02760230066 · Cited by 2 · see citing works
Lumngwena, E. N., Shuping, L., Bernitz, N., & Woodman, Z. (2019) · BMC Research Notes · doi:10.1186/s13104-019-4375-0 · Cited by 2 · see citing works
Intra-Patient Evolution of HIV-2 Molecular Properties
Palm, A. A., Esbjörnsson, J., Kvist, A., Månsson, F., Biague, A. J., Norrgren, H., Jansson, M., & Medstrand, P. (2022) · Viruses · doi:10.3390/v14112447 · Cited by 2 · see citing works
Production of a new variant of soluble trimer Env of HIV-1 CRF63_02A6 SOSIP.664
Борисовна, Р. Н., Рудометов, А. П., Fando, A. A., Vahitov, D. I., Ilyichev, A. A., Agafonov, A. P., & Карпенко, Л. И. (2024) · Journal of microbiology epidemiology immunobiology · doi:10.36233/0372-9311-590 · Cited by 2 · see citing works
Lombardi, F., Nakamura, K. J., Chen, T., Sobrera, E. R., Tobin, N. H., & Aldrovandi, G. M. (2015) · PLoS ONE · doi:10.1371/journal.pone.0128116 · Cited by 2 · see citing works
Glycosylation in HIV-1 Envelope Glycoprotein and its Biological Implications
Ho, Y. S., & Saksena, N. K. (2013) · Future Virology · doi:10.2217/fvl.13.64 · Cited by 2 · see citing works
Specific Substitutions in Region V2 of gp120 env confer SHIV Neutralisation Resistance
Pısıl, Y., Yazıcı, Z., Shida, H., Matsushita, S., & Miura, T. (2020) · Pathogens · doi:10.3390/pathogens9030181 · Cited by 2 · see citing works
Ahmed, S., Shrivastava, T., Kumar, R., Kumar, M., Banerjee, M., Kumar, N., Bansal, M., Das, S., & Samal, S. (2020) · Biochimica et Biophysica Acta (BBA) - General Subjects · doi:10.1016/j.bbagen.2020.129733 · Cited by 2 · see citing works
Stagnoli, S., & Abrescia, N. G. A. (2025) · Methods in molecular biology · doi:10.1007/978-1-0716-4722-6_11 · Cited by 1 · see citing works
Defining criteria for broadly neutralizing HIV antibodies
David‐Fung, E., Belobrajdic, K., Macke, J. P., Quackenbush, C. R., Ganguly, K., & Mamrosh, J. L. (2025) · Frontiers in Immunology · doi:10.3389/fimmu.2025.1624020 · Cited by 1 · see citing works
- Authors
- Wang, W., Nie, J., Prochnow, C., Truong, C., Jia, Z., Wang, S., Chen, X. S., & Wang, Y.
- Affiliations
- National Institutes for Food and Drug Control (CN)
- University of Southern California (US)
- Corresponding author
- Wang, Youchun
- Venue
- Retrovirology
- Published
- 2013-02-06
- Volume
- 10
- Issue
- 1
- Pages
- 14-14
- ISSN
- 1742-4690 (ISSN-L)
- PMC
- PMC3648360
- OpenAlex
- W2137366946
- Cited by
- 114
- References
- 64
- Citations by year
- 2026: 3 · 2025: 10 · 2024: 6 · 2023: 4 · 2022: 5 · 2021: 16 · 2020: 8 · 2019: 9 · 2018: 8 · 2017: 11 · 2016: 8 · 2015: 13 · 2014: 8 · 2013: 4
- FWCI
- 5.05
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Retrovirology (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Funders
- National Institutes of Health (GM087986)
- National Institute of General Medical Sciences (GM087986, R01GM087986)
- Topics
- Life Sciences › Immunology and Microbiology › Virology › HIV Research and Treatment
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Glycosylation and Glycoproteins Research
- Physical Sciences › Chemistry › Organic Chemistry › Carbohydrate Chemistry and Synthesis
- Keywords
- HIV-1 envelope glycoprotein, N-glycosylation sites, viral infectivity, antibody neutralization, CRF07_BC, V1V2 loop, gp41, CD4 binding site, monoclonal antibodies, PG9, homology modeling, HIV-1 clade B
- MeSH terms
- Glycosylation, Humans, Neutralization Tests, Virus Replication, HIV Antibodies, HIV-1, env Gene Products, Human Immunodeficiency Virus, Antibodies, Neutralizing
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