Promise and pitfalls of the Immunochip

Cortes, Adrian, Brown, Matthew A·2010·Arthritis Research & Therapy
DOI 10.1186/ar3204

Cited by (482)

Items 101–200 of 482

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  2. Introduction
    2014 · Diabetes Care
  3. Meta-analysis in more than 17,900 cases of ischemic stroke reveals a novel association at 12q24.12
    Laura Luisa Kilarski, Sefanja Achterberg, William J. Devan, Matthew Traylor, Rainer Malik, Arne Lindgren, Guillaume Paré, Pankaj Kumar Sharma, Agnieszka Slowik, Vincent Thijs et al. · 2014 · Neurology
  4. Genetic component of giant cell arteritis
    F. David Carmona, Miguel Ángel González-Gay, Javier J. Martin · 2013 · Rheumatology
  5. Rare variant genotype imputation with thousands of study-specific whole-genome sequences: implications for cost-effective study designs
    Giorgio Pistis, Eleonora Porcu, Scott I. Vrieze, Carlo Sidore, Maristella Steri, Fabrice Danjou, Fabio Busonero, Antonella Mulas, Magdalena Żołędziewska, Andrea Maschio et al. · 2014 · European Journal of Human Genetics
  6. Genome‐wide association studies of atopic dermatitis
    Mayumi Tamari, Tomomitsu Hirota · 2014 · The Journal of Dermatology
  7. Improved imputation quality of low-frequency and rare variants in European samples using the ‘Genome of The Netherlands’
    Patrick Deelen, Androniki Menelaou, Elisabeth M van Leeuwen, Alexandros Kanterakis, Freerk van Dijk, Carolina Medina‐Gómez, Laurent C. Francioli, Jouke‐Jan Hottenga, Lennart C. Karssen, Karol Estrada et al. · 2014 · European Journal of Human Genetics
  8. optiCall: a robust genotype-calling algorithm for rare, low-frequency and common variants
    Tejas S Shah, J. Z. Liu, James A. B. Floyd, James Morris, N. Wirth, Jeffrey C. Barrett, Carl A. Anderson · 2012 · Bioinformatics
  9. Psoriasis and Other Complex Trait Dermatoses: From Loci to Functional Pathways
    Francesca Capon, Arthur David Burden, Richard C. Trembath, Jonathan N. Barker · 2011 · Journal of Investigative Dermatology
  10. The IL-17/IL-23 Axis and Its Genetic Contribution to Psoriatic Arthritis
    Matteo L. Vecellio, Vivien Xanath Hake, Connor Davidson, Maria Cristina Carena, B. P. Wordsworth, Carlo Francesco Selmi · 2021 · Frontiers in Immunology
  11. Genetic Evidence for PLASMINOGEN as a Shared Genetic Risk Factor of Coronary Artery Disease and Periodontitis
    Arne S. Schäefer, Gregor Bochenek, Arne Jochens, David Ellinghaus, Henrik Dommisch, Esra Guzeldemir-Akcakanat, Christian Graetz, Inga Harks, Yvonne Jockel‐Schneider, Knut Weinspach et al. · 2014 · Circulation Cardiovascular Genetics
  12. Siblings of patients with Crohn’s disease exhibit a biologically relevant dysbiosis in mucosal microbial metacommunities
    Charlotte R H Hedin, Chris Gast, Geraint B. Rogers, Leah Cuthbertson, Sara A McCartney, Andrew J. Stagg, James Oliver Lindsay, Kevin Whelan · 2015 · Gut
  13. The role of gut microbiota and IL-23/IL-17 pathway in ankylosing spondylitis immunopathogenesis: New insights and updates
    Farhad Babaie, Milad Hasankhani, Hamed Mohammadi, Elham Safarzadeh, Alireza Rezaiemanesh, Reza Salimi, Behzad Baradaran, Zohreh Babaloo · 2018 · Immunology Letters
  14. The Immunogenetic Architecture of Autoimmune Disease
    An Goris, Adrian Liston · 2012 · Cold Spring Harbor Perspectives in Biology
  15. Genome‐wide association studies of multiple sclerosis
    Cotsapas, Chris, Mitrovic, Mitja · 2018 · Clinical & Translational Immunology
  16. Differential Effect of Genetic Burden on Disease Phenotypes in Crohn's Disease and Ulcerative Colitis: Analysis of a North American Cohort
    Ashwin N. Ananthakrishnan, Hailiang Huang, Deanna D. Nguyen, Jenny S. Sauk, Vijay Yajnik, Ramnik J. Xavier · 2014 · The American Journal of Gastroenterology
  17. Genetic variation in IBD: progress, clues to pathogenesis and possible clinical utility
    Byong Duk Ye, Dermot P.B. McGovern · 2016 · Expert Review of Clinical Immunology
  18. Cohort Profile: Genetics of Diabetes Audit and Research in Tayside Scotland (GoDARTS)
    Harry L. Hébert, Bridget Shepherd, Keith Milburn, Abirami Veluchamy, Weihua Meng, Fiona Carr, Louise A. Donnelly, Roger Tavendale, Graham Leese, Helen Martina Colhoun et al. · 2017 · International Journal of Epidemiology
  19. In search of low-frequency and rare variants affecting complex traits
    Kalliope Panoutsopoulou, Ioanna Tachmazidou, Eleftheria Zeggini · 2013 · Human Molecular Genetics
  20. Whole-genome sequencing identifies complex contributions to genetic risk by variants in genes causing monogenic systemic lupus erythematosus
    Jonas Carlsson Almlöf, Sara Nystedt, Dag Leonard, Maija‐Leena Eloranta, Giorgia Grosso, Christopher Sjöwall, Anders A Bengtsson, Andreas Jönsen, Iva Gunnarsson, Elisabet Svenungsson et al. · 2019 · Human Genetics
  21. Multi-Omics Approaches in Immunological Research
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  22. Association study of genes related to bone formation and resorption and the extent of radiographic change in ankylosing spondylitis
    Adrián Cortés, Walter P. Maksymowych, B P Wordsworth, Robert Davies Inman, Patrick Danoy, Proton Rahman, Millicent Stone, Maripat Corr, Lianne S. Gensler, Dafna Gladman et al. · 2014 · Annals of the Rheumatic Diseases
  23. Genetics of Psoriasis
    Satveer K. Mahil, Francesca Capon, Jonathan N. Barker · 2014 · Dermatologic Clinics
  24. Body Mass Index, Genetic Susceptibility, and Risk of Complications Among Individuals with Crohnʼs Disease
    Patricia L. Pringle, Kathleen O. Stewart, Joanna M. Peloquin, Holly C. Sturgeon, Deanna D. Nguyen, Jenny S. Sauk, John J. Garber, Vijay Yajnik, Ashwin N. Ananthakrishnan, Andrew Tan Chan et al. · 2015 · Inflammatory Bowel Diseases
  25. Interaction between passive smoking and two HLA genes with regard to multiple sclerosis risk
    Anna Karin Hedström, Izaura Lima Bomfim, Lisa F. Barcellos, Farren B. S. Briggs, Catherine A. Schaefer, Ingrid Skelton Kockum, Tomas P Olsson, Lars S. Alfredsson · 2014 · International Journal of Epidemiology
  26. Multiple sclerosis
    Chris J. Cotsapas, Mitja Mitrovič, David A. Hafler · 2018 · Handbook of clinical neurology
  27. Classical HLA-DRB1 and DPB1 alleles account for HLA associations with primary biliary cirrhosis
    Pietro Invernizzi, M Ransom, Soumya Raychaudhuri, Roman Kosoy, Ana Lleò, Russell Shigeta, André Franke, Fabrizio Bossa, C. I. Amos, Peter K. Gregersen et al. · 2012 · Genes and Immunity
  28. Immunochip SNP array identifies novel genetic variants conferring susceptibility to candidaemia
    Vinod Kumar, Shih‐Chin Cheng, Melissa D. Johnson, Sanne P. Smeekens, Agnieszka Wójtowicz, Evangelos J. Giamarellos‐Bourboulis, Juha M Karjalainen, Lude Franke, Sebo Withoff, Theo S. Plantinga et al. · 2014 · Nature Communications
  29. A Pleiotropy-Informed Bayesian False Discovery Rate Adapted to a Shared Control Design Finds New Disease Associations From GWAS Summary Statistics
    James Liley, Chris Wallace · 2015 · PLoS Genetics
  30. The emerging spectrum of allelic variation in schizophrenia: current evidence and strategies for the identification and functional characterization of common and rare variants
    Bryan J. Mowry, Jacob Gratten · 2012 · Molecular Psychiatry
  31. A Burden of Rare Variants Associated with Extremes of Gene Expression in Human Peripheral Blood
    Jing Zhao, Idowu Akinsheye, Dalia Arafat, Thomas James Cradick, Ciaran M. Lee, Samridhi Banskota, Urko M. Marigorta, Gang Bao, Greg C. Gibson · 2016 · The American Journal of Human Genetics
  32. How next-generation sequencing is transforming complex disease genetics
    Helena Kilpinen, Jeffrey C. Barrett · 2012 · Trends in Genetics
  33. Characterization of Genetic Loci That Affect Susceptibility to Inflammatory Bowel Diseases in African Americans
    Chengrui Huang, Talin Haritunians, David T. Okou, David J. Cutler, Michael E. Zwick, Kent D. Taylor, Lisa Wu Datta, Joseph Maranville, Zhenqiu Liu, Shannon Ellis et al. · 2015 · Gastroenterology
  34. Evaluating the Performance of Fine-Mapping Strategies at Common Variant GWAS Loci
    Martijn van de Bunt, Adrián Cortés, Matthew Arthur Brown, Andrew P. Morris, Mark I. McCarthy · 2015 · PLoS Genetics
  35. Allelic heterogeneity in NCF2 associated with systemic lupus erythematosus (SLE) susceptibility across four ethnic populations
    Xana Kim-Howard, Celi Sun, Julio E. Molineros, Amit K. Maiti, Hema Kumar Chandru, Adam Adler, Graham B. Wiley, Kenneth M. Kaufman, Leah Claire Kottyan, Joel M. Guthridge et al. · 2013 · Human Molecular Genetics
  36. A Genetic Basis for Mechanosensory Traits in Humans
    H Frenzel, Jörg Edgar Bohlender, Katrin Pinsker, Bärbel Wohlleben, Jens Tank, Stefan G. Lechner, Daniela Schiska, Teresa Jaijo, Franz Rüschendorf, Kathrin Saar et al. · 2012 · PLoS Biology
  37. The immunogenetics of neurological disease
    Misra, Maneesh K., Damotte, Vincent, Hollenbach, Jill A. · 2018 · Immunology
  38. An ImmunoChip study of multiple sclerosis risk in African Americans
    Noriko Isobe, Lohith Madireddy, Pouya Khankhanian, Takuya Matsushita, Stacy J. Caillier, Jayaji M. Moré, Pierre‐Antoine Gourraud, Jacob L. McCauley, Ashley Harris Beecham, Laura M. Piccio et al. · 2015 · Brain
  39. Brief Report: The Genetic Profile of Rheumatoid Factor–Positive Polyarticular Juvenile Idiopathic Arthritis Resembles That of Adult Rheumatoid Arthritis
    Anne Hinks, Miranda C. Marion, Joanna E. Cobb, Mary E. Comeau, Marc Sudman, Hannah C. Ainsworth, John Bowes, Mara L. Becker, John F. Bohnsack, Johannes‐Peter Haas et al. · 2018 · Arthritis & Rheumatology
  40. Genetic susceptibility to infectious diseases: Current status and future perspectives from genome-wide approaches
    Alessandra Mozzi, Chiara Pontremoli, Manuela Sironi · 2017 · Infection Genetics and Evolution
  41. Evaluation of the Metabochip Genotyping Array in African Americans and Implications for Fine Mapping of GWAS-Identified Loci: The PAGE Study
    Steven G. Buyske, Ying Wu, Cara L. Carty, Iona C. Cheng, Themistocles L. Assimes, Logan C. Dumitrescu, Lucia A. Hindorff, Sabrina L. Mitchell, José Luis Ambite, Eric Boerwinkle et al. · 2012 · PLoS ONE
  42. The importance of cohort studies in the post-GWAS era
    Cisca Wijmenga, Alexandra Zhernakova · 2018 · Nature Genetics
  43. Immunogenetics of systemic sclerosis: Defining heritability, functional variants and shared-autoimmunity pathways
    Lara Bossini‐Castillo, Elena López‐Isac, Javier J. Martin · 2015 · Journal of Autoimmunity
  44. Progress in the genetics of uveitis
    Xiu‐Feng Huang, Matthew Arthur Brown · 2022 · Genes and Immunity
  45. Immunochip Analysis Identification of 6 Additional Susceptibility Loci for Crohnʼs Disease in Koreans
    Suk‐Kyun Yang, Myunghee Hong, Hyunchul Choi, Wanting Zhao, Yusun Jung, Talin Haritunians, Byong Duk Ye, Kyung Jo Kim, Sang Hyoung Park, Inchul Lee et al. · 2014 · Inflammatory Bowel Diseases
  46. A Matrix-based Model Predicts Primary Response to Infliximab in Crohn’s Disease
    Thomas Billiet, Konstantinos Papamichael, Magali de Bruyn, Bram Verstockt, Isabelle Cleynen, Fred Princen, Sharat Singh, Marc Ferrante, Gert Van Assche, Séverine Vermeire · 2015 · Journal of Crohn s and Colitis
  47. Imputation of KIR Types from SNP Variation Data
    Damjan Vukcevic, James A. Traherne, Sigrid Næss, Eva Ellinghaus, Yoichiro Kamatani, Alexander Dilthey, Mark G. Lathrop, Tom H. Karlsen, André Franke, Miriam F. Moffatt et al. · 2015 · The American Journal of Human Genetics
  48. The link between HLA-B27 and SpA--new ideas on an old problem
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  49. Genome-Wide Association Studies in Primary Biliary Cirrhosis
    Aliya F. Gulamhusein, Brian D. Juran, Konstantinos Lazaridis · 2015 · Seminars in Liver Disease
  50. Genetic associations at regulatory phenotypes improve fine-mapping of causal variants for 12 immune-mediated diseases
    Kousik Kundu, Manuel Tardáguila, Alice Mann, Stephen Watt, Hannes Ponstingl, Louella J. Vasquez, Dominique Von Schiller, Nicholas W. Morrell, Oliver Stegle, Tomi Pastinen et al. · 2022 · Nature Genetics
  51. Decoding multiple sclerosis: an update on genomics and future directions
    Jorge R. Oksenberg · 2013 · Expert Review of Neurotherapeutics
  52. Dense genotyping of immune-related loci identifies HLA variants associated with increased risk of collagenous colitis
    Helga Westerlind, Marie-Rose Mellander, Francesca Bresso, Andreas Münch, Ferdinando Bonfiglio, Ghazaleh Assadi, Joseph James Rafter, Matthias Hübenthal, Wolfgang Lieb, Henrik Källberg et al. · 2015 · Gut
  53. Unraveling the autoimmune translational research process layer by layer
    Richard S. Blumberg, Bonnie N. Dittel, David A. Hafler, Matthias von Herrath, Frank Oliver Nestle · 2012 · Nature Medicine
  54. An Immunochip-based interrogation of scleroderma susceptibility variants identifies a novel association at DNASE1L3
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  55. Genetic Analysis with the Immunochip Platform in Behçet Disease. Identification of Residues Associated in the HLA Class I Region and New Susceptibility Loci
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  56. A Method for Gene‐Based Pathway Analysis Using Genomewide Association Study Summary Statistics Reveals Nine New Type 1 Diabetes Associations
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  57. Genetic diversity in black South Africans from Soweto
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  58. New insights toward the pathogenesis of ankylosing spondylitis; genetic variations and epigenetic modifications
    Mahdi Mahmoudi, Saeed Aslani, Mohammad Hossein Nicknam, Jafar Karami, Ahmadreza Jamshidi · 2016 · Modern Rheumatology
  59. The Genetics of Psoriasis and Psoriatic Arthritis
    Darren D. O’Rielly, Meghna Jani, Proton Rahman, James T. Elder · 2019 · The Journal of Rheumatology
  60. A systematic review of cancer GWAS and candidate gene meta-analyses reveals limited overlap but similar effect sizes
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  61. Genetic risk factors forClostridium difficileinfection in ulcerative colitis
    Ashwin N. Ananthakrishnan, Emily Oxford, Deanna D. Nguyen, Jenny S. Sauk, Vijay Yajnik, Ramnik J. Xavier · 2013 · Alimentary Pharmacology & Therapeutics
  62. A genetic variant in the region of MMP-9 is associated with serum levels and progression of joint damage in rheumatoid arthritis
    D. P. C. de Rooy, Alexandra Zhernakova, Roula Tsonaka, Annemiek Willemze, B A S Kurreeman, Gosia Trynka, Linda van Toorn, René E. M. Toes, Tom W. J. Huizinga, Jeanine J. Houwing‐Duistermaat et al. · 2013 · Annals of the Rheumatic Diseases
  63. Primary Immunodeficiencies and Inflammatory Disease: A Growing Genetic Intersection
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  64. A Summary on the Genetics of Systemic Lupus Erythematosus, Rheumatoid Arthritis, Systemic Sclerosis, and Sjögren’s Syndrome
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  65. Variability of Primary Sjögren's Syndrome Is Driven by Interferon‐α and Interferon‐α Blood Levels Are Associated With the Class II HLA–DQ Locus
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  67. Human Leukocyte Antigen Genes and Interferon Beta Preparations Influence Risk of Developing Neutralizing Anti-Drug Antibodies in Multiple Sclerosis
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  68. Integrative studies implicate matrix metalloproteinase‐12 as a culprit gene for large‐artery atherosclerotic stroke
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  69. Novel risk genes for systemic lupus erythematosus predicted by random forest classification
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  70. Novel gene variants associated with cardiovascular disease in systemic lupus erythematosus and rheumatoid arthritis
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  71. Sex chromosome aneuploidies among men with systemic lupus erythematosus
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  77. Genetic mapping across autoimmune diseases reveals shared associations and mechanisms
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  79. Combined role of vitamin D status and CYP24A1 in the transition to systemic lupus erythematosus
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  82. Predictors of Outcome in Ulcerative Colitis
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  83. Rheumatoid Arthritis in Latin Americans Enriched for Amerindian Ancestry Is Associated With Loci in Chromosomes 1, 12, and 13, and the HLA Class II Region
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  85. Genetic data: The new challenge of personalized medicine, insights for rheumatoid arthritis patients
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  86. Genetic heterogeneity within the HLA region in three distinct clinical subgroups of myasthenia gravis
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  87. Genetics of Infectious and Inflammatory Diseases: Overlapping Discoveries from Association and Exome-Sequencing Studies
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  88. Collagenous Colitis Is Associated With HLA Signature and Shares Genetic Risks With Other Immune-Mediated Diseases
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  89. From Identification to Characterization of the Multiple Sclerosis Susceptibility Gene CLEC16A
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  90. Genetic variants at the 16p13 locus confer risk for eosinophilic esophagitis
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  92. Genetics of Behçet's Disease: Functional Genetic Analysis and Estimating Disease Heritability
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  93. Polymorphism in a lincRNA Associates with a Doubled Risk of Pneumococcal Bacteremia in Kenyan Children
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  94. Genetic Susceptibility to ANCA-Associated Vasculitis: State of the Art
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  96. Genome-wide association study of intraocular pressure identifies the GLCCI1/ICA1 region as a glaucoma susceptibility locus
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  97. Analysis of Trans-Ancestral SLE Risk Loci Identifies Unique Biologic Networks and Drug Targets in African and European Ancestries
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  98. A plausibly causal functional lupus-associated risk variant in the STAT1–STAT4 locus
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  99. Implications of juvenile idiopathic arthritis genetic risk variants for disease pathogenesis and classification
    Peter Andrija Nigrovic, Marta Martínez‐Bonet, Susan D. Thompson · 2019 · Current Opinion in Rheumatology
  100. Genetics 100 for Cardiologists: Basics of Genome-Wide Association Studies
    Joseph B. Dubé, Robert Alexander Hegele · 2012 · Canadian Journal of Cardiology