DAVID: Database for Annotation, Visualization, and Integrated Discovery

Gene Ontology: tool for the unification of biology

Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., Cherry, J. M., Davis, A. P., Dolinski, K., Dwight, S. S., Eppig, J. T., et al. (2000) · Nature Genetics · doi:10.1038/75556 · Cited by 43,206

KEGG: Kyoto Encyclopedia of Genes and Genomes

Kanehisa, M. (2000) · Nucleic Acids Research · doi:10.1093/nar/28.1.27 · Cited by 37,077

KEGG: Kyoto Encyclopedia of Genes and Genomes

Ogata, H., Goto, S., Sato, K., Fujibuchi, W., Bono, H., & Kanehisa, M. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.1.29 · Cited by 31,232

Database resources of the National Center for Biotechnology Information: update

Wheeler, D. L. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkh073 · Cited by 10,695

Identifying biological themes within lists of genes with EASE

Hosack, D. A., Dennis, G., Sherman, B. T., Lane, H. C., & Lempicki, R. A. (2003) · Genome biology · doi:10.1186/gb-2003-4-10-r70 · Cited by 1,961

The Ensembl genome database project

Hubbard, T. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.1.38 · Cited by 1,610

Computational analysis of microarray data

Quackenbush, J. (2001) · Nature Reviews Genetics · doi:10.1038/35076576 · Cited by 1,481

Database resources of the National Center for Biotechnology Information

Wheeler, D. L. (2000) · Nucleic Acids Research · doi:10.1093/nar/28.1.10 · Cited by 583

GeneCards: a novel functional genomics compendium with automated data mining and query reformulation support.

Rebhan, M., Caspi, V. C., Prilusky, J., & Lancet, D. (1998) · Bioinformatics · doi:10.1093/bioinformatics/14.8.656 · Cited by 502

NetAffx: Affymetrix probesets and annotations

Liu, G. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkg121 · Cited by 487

Microarray Analyses of Newborn Mouse Ovaries Lacking Nobox1

Choi, Y., Qin, Y., Berger, M. F., Ballow, D. J., Bulyk, M. L., & Rajkovic, A. (2007) · Biology of Reproduction · doi:10.1095/biolreprod.107.060459 · Cited by 135

A gene toolbox for monitoring autophagy transcription

Bordi, M., De Cegli, R., Testa, B., Nixon, R. A., Ballabio, A., & Cecconi, F. (2021) · Cell Death & Disease · doi:10.1038/s41419-021-04121-9 · Cited by 131

ΔNp63 is an ectodermal gatekeeper of epidermal morphogenesis

Shalom‐Feuerstein, R., Lena, A. M., Zhou, H., Divonne, S. B.-D. L. F., van Bokhoven, H., Candi, E., Melino, G., & Aberdam, D. (2010) · Cell Death and Differentiation · doi:10.1038/cdd.2010.159 · Cited by 135

Differential expression of porcine sperm microRNAs and their association with sperm morphology and motility

Curry, E., Safranski, T. J., & Pratt, S. L. (2011) · Theriogenology · doi:10.1016/j.theriogenology.2011.06.025 · Cited by 133

Prmt5 is a regulator of muscle stem cell expansion in adult mice

Zhang, T., Günther, S., Looso, M., Kuenne, C. T., Krüger, M., Kim, J., Zhou, Y., & Braun, T. W. (2015) · Nature Communications · doi:10.1038/ncomms8140 · Cited by 131

Dynamic changes in messenger RNA profiles of bovine endometrium during the oestrous cycle

Mitko, K., Ulbrich, S. E., Wenigerkind, H., Sinowatz, F., Blum, H., Wolf, E., & Bauersachs, S. (2008) · Reproduction · doi:10.1530/rep-07-0415 · Cited by 141

The translational landscape of the splicing factor SRSF1 and its role in mitosis

Maslon, M. M., Heras, S. R., Bellora, N., Eyras, E., & Cáceres, J. F. (2014) · eLife · doi:10.7554/elife.02028 · Cited by 127

INS GFP/w human embryonic stem cells facilitate isolation of in vitro derived insulin-producing cells

Micallef, S. J., Li, X., Schiesser, J. V., Hirst, C. E., Yu, Q. C., Lim, S. M., Nostro, M. C., Elliott, D. A., Sarangi, F., Harrison, L. C., et al. (2011) · Diabetologia · doi:10.1007/s00125-011-2379-y · Cited by 136

A multivariate approach for integrating genome-wide expression data and biological knowledge

Kong, S. W., Pu, W. T., & Park, P. J. (2006) · Bioinformatics · doi:10.1093/bioinformatics/btl401 · Cited by 132

E2F in vivo binding specificity: Comparison of consensus versus nonconsensus binding sitesPreprint

Rabinovich, A., Jin, V. X., Rabinovich, R., Xu, X., & Farnham, P. (2008) · Genome Research · doi:10.1101/gr.080622.108 · Cited by 134

Impact of Hospital Variables on Case Mix Index as a Marker of Disease Severity

Mendez, C. M., Harrington, D. W., Christenson, P., & Spellberg, B. (2014) · Population Health Management · doi:10.1089/pop.2013.0002 · Cited by 130

Immune Activation in Retinal Aging: A Gene Expression Study

Chen, M., Muckersie, E., Forrester, J. V., & Xu, H. (2010) · Investigative Opthalmology & Visual Science · doi:10.1167/iovs.09-5103 · Cited by 130

Chronic Dietary Exposure to a Low-Dose Mixture of Genistein and Vinclozolin Modifies the Reproductive Axis, Testis Transcriptome, and Fertility

Eustache, F., Mondon, F., Canivenc-Lavier, M. C., Lesaffre, C., Fulla, Y., Bergès, R., Cravedi, J., Vaiman, D., & Auger, J. (2009) · Environmental Health Perspectives · doi:10.1289/ehp.0800158 · Cited by 130

The forkhead transcription factor FOXM1 promotes endocrine resistance and invasiveness in estrogen receptor-positive breast cancer by expansion of stem-like cancer cells

Bergamaschi, A., Madak‐Erdogan, Z., Kim, Y. J., Choi, Y., Lu, H., & Katzenellenbogen, B. S. (2014) · Breast Cancer Research · doi:10.1186/s13058-014-0436-4 · Cited by 130

TAM: A method for enrichment and depletion analysis of a microRNA category in a list of microRNAs

Lü, M., Shi, B., Wang, J., Cao, Q., & Cui, Q. (2010) · BMC Bioinformatics · doi:10.1186/1471-2105-11-419 · Cited by 130

Comprehensive Analysis of Glycolytic Enzymes as Therapeutic Targets in the Treatment of Glioblastoma

Sanzey, M., Rahim, S. A. A., Oudin, A., Dirkse, A., Kaoma, T., Vallar, L., Herold‐Mende, C. C., Bjerkvig, R., Golebiewska, A., & Niclou, S. P. (2015) · PLoS ONE · doi:10.1371/journal.pone.0123544 · Cited by 130

Distinct roles for miR‐1 and miR‐133a in the proliferation and differentiation of rhabdomyosarcoma cells

Rao, P. K., Missiaglia, E., Shields, L. Y., Hyde, G., Yuan, B., Shepherd, C. J., SHIPLEY, J. M., & Lodish, H. F. (2010) · The FASEB Journal · doi:10.1096/fj.09-150698 · Cited by 128

A restricted period for formation of outer subventricular zone defined by Cdh1 and Trnp1 levels

Martínez‐Martínez, M. Á., Romero, C. D. J., Fernández, V., Cárdenas, A., Götz, M., & Borrell, V. (2016) · Nature Communications · doi:10.1038/ncomms11812 · Cited by 133

The proto-oncogene tyrosine protein kinase Src is essential for macrophage-myofibroblast transition during renal scarring

Tang, P. M., Zhou, S., Li, C., Liao, J., Xiao, J., Wang, Q., Lian, G., Li, J., Huang, X., To, K., et al. (2017) · Kidney International · doi:10.1016/j.kint.2017.07.026 · Cited by 130

Effect of starvation on transcriptomes of brain and liver in adult female zebrafish (Danio rerio)

Drew, R. E., Rodnick, K. J., Settles, M. L., Wacyk, J. M., Churchill, E., Powell, M. S., Hardy, R. W., Murdoch, G. K., Hill, R. A., & Robison, B. D. (2008) · Physiological Genomics · doi:10.1152/physiolgenomics.90213.2008 · Cited by 130

The atypical E2F family member E2F7 couples the p53 and RB pathways during cellular senescencePreprint

Aksoy, O., Chicas, A., Zeng, T., Zhao, Z., McCurrach, M. E., Wang, X., & Lowe, S. W. (2012) · Genes & Development · doi:10.1101/gad.196238.112 · Cited by 130

Systematic analysis of gene expression patterns associated with postmortem interval in human tissues

Zhu, Y., Wang, L., Yin, Y., & Yang, E. (2017) · Scientific Reports · doi:10.1038/s41598-017-05882-0 · Cited by 129

The Human Placental Sexome Differs between Trophoblast Epithelium and Villous Vessel Endothelium

Cvitic, S., Longtine, M. S., Hackl, H., Wagner, K., Nelson, M. D., Desoye, G., & Hiden, U. (2013) · PLoS ONE · doi:10.1371/journal.pone.0079233 · Cited by 127

The Wnt/beta‐catenin pathway is activated during advanced arterial aging in humans

Marchand, A., Atassi, F., Gaaya, A., Leprince, P. N., Feuvre, C. L., Soubrier, F., Lompré, A., & Nadaud, S. (2010) · Aging Cell · doi:10.1111/j.1474-9726.2010.00661.x · Cited by 126

A comparative analysis of host responses to avian influenza infection in ducks and chickens highlights a role for the interferon-induced transmembrane proteins in viral resistance

Smith, J., Smith, D., Yu, L., Paton, I. R., Gutowska, W., Forrest, H. L., Danner, A. F., Seiler, J. P., Digard, P., Webster, R. G., et al. (2015) · BMC Genomics · doi:10.1186/s12864-015-1778-8 · Cited by 129

The Thioxotriazole Copper(II) Complex A0 Induces Endoplasmic Reticulum Stress and Paraptotic Death in Human Cancer Cells

Tardito, S., Isella, C., Médico, E., Marchiò, L., Bevilacqua, E., Hatzoglou, M., Bussolati, O., & Franchi‐Gazzola, R. (2009) · Journal of Biological Chemistry · doi:10.1074/jbc.m109.026583 · Cited by 130

Epigenomic analysis of gastrulation identifies a unique chromatin state for primed pluripotency

Xiang, Y., Zhang, Y., Xu, Q., Zhou, C., Liu, B., Du, Z., Zhang, K., Zhang, B., Wang, X., Gayen, S., et al. (2019) · Nature Genetics · doi:10.1038/s41588-019-0545-1 · Cited by 125

Activation of tyrosine kinase receptor signaling pathway by rasagiline facilitates neurorescue and restoration of nigrostriatal dopamine neurons in post-MPTP-induced parkinsonism

Sagi, Y., Mandel, S. A., Amit, T., & Youdim, M. B. H. (2006) · Neurobiology of Disease · doi:10.1016/j.nbd.2006.07.020 · Cited by 128

Expression profiling of genes regulated by TGF-beta: Differential regulation in normal and tumour cells

Ranganathan, P., Agrawal, A., Bhushan, R., Chavalmane, A. K., Kalathur, R. K. R., Takahashi, T., & Kondaiah, P. (2007) · BMC Genomics · doi:10.1186/1471-2164-8-98 · Cited by 131

Transcriptional profiling of myostatin‐knockout mice implicates Wnt signaling in postnatal skeletal muscle growth and hypertrophy

Steelman, C. A., Recknor, J. C., Nettleton, D. S., & Reecy, J. M. (2006) · The FASEB Journal · doi:10.1096/fj.05-5125fje · Cited by 133

Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limbPreprint

Cotney, J. L., Leng, J., Oh, S., DeMare, L. E., Reilly, S. K., Gerstein, M., & Noonan, J. P. (2012) · Genome Research · doi:10.1101/gr.129817.111 · Cited by 127

A gene expression signature of emphysema-related lung destruction and its reversal by the tripeptide GHK

Campbell, J. D., McDonough, J. E., Zeskind, J. E., Hackett, T. L., Pechkovsky, D. V., Brandsma, C.-A., Suzuki, M., Gosselink, J. V., Liu, G., Alekseyev, Y. O., et al. (2012) · Genome Medicine · doi:10.1186/gm367 · Cited by 128

Runx2 Regulates G Protein-coupled Signaling Pathways to Control Growth of Osteoblast Progenitors

Teplyuk, N. M., Galindo, M. A., Teplyuk, V. I., Pratap, J., Young, D. W., Lapointe, D. S., Javed, A., Stein, J. L., Lian, J. B., Stein, G. S., et al. (2008) · Journal of Biological Chemistry · doi:10.1074/jbc.m802453200 · Cited by 128

Circadian cycles are the dominant transcriptional rhythm in the intertidal mussel Mytilus californianus

Connor, K. M., & Gracey, A. Y. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1111076108 · Cited by 134

Integration of Genome-Wide Computation DRE Search, AhR ChIP-chip and Gene Expression Analyses of TCDD-Elicited Responses in the Mouse Liver

Dere, E., Lo, R., Celius, T., Matthews, J. B., & Zacharewski, T. R. (2011) · BMC Genomics · doi:10.1186/1471-2164-12-365 · Cited by 128

Alternative translation start sites are conserved in eukaryotic genomes

Bazykin, G. A., & Kochetov, A. V. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkq806 · Cited by 130

RNA sequencing reveals sexually dimorphic gene expression before gonadal differentiation in chicken and allows comprehensive annotation of the W-chromosome

Ayers, K. L., Davidson, N., Hamdan, D. D. M., Roeszler, K. N., Grützner, F., Sinclair, A. H., Oshlack, A., & Smith, C. A. (2013) · Genome biology · doi:10.1186/gb-2013-14-3-r26 · Cited by 132

Genome‐wide dFOXO targets and topology of the transcriptomic response to stress and insulin signalling

Alic, N., Andrews, T. D., Giannakou, M. E., Papatheodorou, I., Slack, C., Hoddinott, M. P., Cochemé, H. M., Schuster, E. F., Thornton, J. M., & Partridge, L. (2011) · Molecular Systems Biology · doi:10.1038/msb.2011.36 · Cited by 128

Identification of Key Gene Modules in Human Osteosarcoma by Co‐Expression Analysis Weighted Gene Co‐Expression Network Analysis (WGCNA)

Liu, X., Hu, A., Zhao, J., & Chen, F. (2017) · Journal of Cellular Biochemistry · doi:10.1002/jcb.26050 · Cited by 126

Global H4 acetylation analysis by ChIP-chip in systemic lupus erythematosus monocytes

Zhang, Z., Song, L., Maurer, K., Petri, M., & Sullivan, K. E. (2009) · Genes and Immunity · doi:10.1038/gene.2009.66 · Cited by 132

Intraovarian Activins Are Required for Female Fertility

Pangas, S. A., Jorgez, C. J., Tran, M., Agno, J. E., Li, X., Brown, C., Kumar, T. R., & Matzuk, M. M. (2007) · Molecular Endocrinology · doi:10.1210/me.2007-0146 · Cited by 128

Functional genomics studies of oocyte competence: evidence that reduced transcript abundance for follistatin is associated with poor developmental competence of bovine oocytes

PATEL, O. V., Bettegowda, A., Ireland, J. J., Coussens, P. M., Lonergan, P., & Smith, G. W. (2007) · Reproduction · doi:10.1530/rep.1.01123 · Cited by 128

Staphylococcus aureus Biofilm and Planktonic cultures differentially impact gene expression, mapk phosphorylation, and cytokine production in human keratinocytes

Secor, P. R., James, G. A., Fleckman, P. H., Olerud, J. E., McInnerney, K., & Stewart, P. S. (2011) · BMC Microbiology · doi:10.1186/1471-2180-11-143 · Cited by 129

Position-specific binding of FUS to nascent RNA regulates mRNA lengthPreprint

Masuda, A., Takeda, J., Okuno, T., Okamoto, T., Ohkawara, B., Ito, M., Ishigaki, S., Sobue, G., & Ohno, K. (2015) · Genes & Development · doi:10.1101/gad.255737.114 · Cited by 130

Elucidation of the ELK1 target gene network reveals a role in the coordinate regulation of core components of the gene regulation machinery

Boros, J., Donaldson, I. J., O'Donnell, A., Odrowaz, Z. A., Zeef, L., Lupien, M., Meyer, C. A., Liu, X. S., Brown, M., & Sharrocks, A. D. (2009) · Genome Research · doi:10.1101/gr.093047.109 · Cited by 127

Correlation analysis between genome-wide expression profiles and cytoarchitectural abnormalities in the prefrontal cortex of psychiatric disorders

Kim, S., & Webster, M. J. (2010) · Molecular Psychiatry · doi:10.1038/mp.2008.99 · Cited by 102

Increased Expression of the Dyslexia Candidate Gene DCDC2 Affects Length and Signaling of Primary Cilia in Neurons

Massinen, S., Hokkanen, M., Matsson, H., Tammimies, K., Tapia‐Páez, I., Dahlström-Heuser, V., Kuja‐Panula, J., Burghoorn, J., Jeppsson, K. E., Swoboda, P., et al. (2011) · PLoS ONE · doi:10.1371/journal.pone.0020580 · Cited by 133

Fetal Mouse Phthalate Exposure Shows that Gonocyte Multinucleation is Not Associated with Decreased Testicular Testosterone

Gaido, K. W., Hensley, J. B., Liu, D., Wallace, D. G., Borghoff, S. J., Johnson, K. J., Hall, S. J., & Boekelheide, K. (2007) · Toxicological Sciences · doi:10.1093/toxsci/kfm049 · Cited by 127

microRNA-Seq reveals cocaine-regulated expression of striatal microRNAs

Eipper-Mains, J. E., Kiraly, D. D., Palakodeti, D., Mains, R. E., Eipper, B. A., & Graveley, B. R. (2011) · RNA · doi:10.1261/rna.2775511 · Cited by 130

Using Rule-Based Machine Learning for Candidate Disease Gene Prioritization and Sample Classification of Cancer Gene Expression Data

Glaab, E., Bacardit, J., Garibaldi, J. M., & Krasnogor, N. (2012) · PLoS ONE · doi:10.1371/journal.pone.0039932 · Cited by 126

Defining the earliest step of cardiovascular progenitor specification during embryonic stem cell differentiation

Bondue, A., Tännler, S., Chiapparo, G., Chabab, S., Ramialison, M., Paulissen, C., Beck, B., Harvey, R. P., & Blanpain, C. (2011) · The Journal of Cell Biology · doi:10.1083/jcb.201007063 · Cited by 127

Effects of immunostimulation on social behavior, chemical communication and genome-wide gene expression in honey bee workers (Apis mellifera)

Richard, F., Holt, H. L., & Grozinger, C. M. (2012) · BMC Genomics · doi:10.1186/1471-2164-13-558 · Cited by 127

PHYTOCHROME-INTERACTING FACTORs trigger environmentally responsive chromatin dynamics in plants

Willige, B. C., Zander, M., Yoo, C. Y., Phan, A., Garza, R. M., Wanamaker, S. A., He, Y., Nery, J. R., Chen, H., Chen, M., et al. (2021) · Nature Genetics · doi:10.1038/s41588-021-00882-3 · Cited by 127

Improvement of Galactose Uptake in Saccharomyces cerevisiae through Overexpression of Phosphoglucomutase: Example of Transcript Analysis as a Tool in Inverse Metabolic Engineering

Bro, C., Knudsen, S., Regenberg, B., Lisbeth Olsson, A., & Nielsen, J. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.11.6465-6472.2005 · Cited by 126

Gene expression profiling of individual cases reveals consistent transcriptional changes in alcoholic human brain

Liu, J., Lewohl, J. M., Dodd, P. R., Randall, P. K., Harris, R. A., & Mayfield, R. D. (2004) · Journal of Neurochemistry · doi:10.1111/j.1471-4159.2004.02570.x · Cited by 127

Genomic evolution of the placenta using co-option and duplication and divergencePreprint

Knox, K., & Baker, J. C. (2008) · Genome Research · doi:10.1101/gr.071407.107 · Cited by 128

MicroRNA identity and abundance in developing swine adipose tissue as determined by solexa sequencing

Li, G., Li, Y., Li, X., Ning, X., Li, M., & Yang, G. (2011) · Journal of Cellular Biochemistry · doi:10.1002/jcb.23045 · Cited by 125

Detection of selective sweeps in cattle using genome-wide SNP data

Ramey, H. R., Decker, J. E., McKay, S., Rolf, M. M., Schnabel, R. D., & Taylor, J. F. (2013) · BMC Genomics · doi:10.1186/1471-2164-14-382 · Cited by 132

Tissue specific differentially methylated regions (TDMR): Changes in DNA methylation during development

Song, F., Mahmood, S., Ghosh, S., Liang, P., Smiraglia, D. J., Nagase, H., & Held, W. A. (2008) · Genomics · doi:10.1016/j.ygeno.2008.09.003 · Cited by 126

CD98 expression modulates intestinal homeostasis, inflammation, and colitis-associated cancer in mice

Nguyen, H. T. T., Dalmasso, G., Törkvist, L., Halfvarson, J., Yan, Y., Laroui, H., Shmerling, D., Tallone, T., D’Amato, M., Sitaraman, S. V., et al. (2011) · Journal of Clinical Investigation · doi:10.1172/jci44631 · Cited by 126

Intrinsic Depot-Specific Differences in the Secretome of Adipose Tissue, Preadipocytes, and Adipose Tissue–Derived Microvascular Endothelial Cells

HOCKING, S. L., Wu, L. E., Guilhaus, M., Chisholm, D. J., & James, D. E. (2010) · Diabetes · doi:10.2337/db10-0483 · Cited by 126

Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach

Wang, Y., Brahmakshatriya, V., Zhu, H., Lupiani, B., Reddy, S. M., Yoon, B.-J., Gunaratne, P. H., Kim, J.-H., Chen, R., Wang, J., et al. (2009) · BMC Genomics · doi:10.1186/1471-2164-10-512 · Cited by 128

Deciphering cellular states of innate tumor drug responses

Graudens, E., Boulanger, V., Mollard, C., Mariage, R., Barlet, X., Grémy, G., Couillault, C., Lajémi, M., Piatier‐Tonneau, D., Zaborski, P., et al. (2006) · Genome biology · doi:10.1186/gb-2006-7-3-r19 · Cited by 130

Examination of transcriptional networks reveals an important role for TCFAP2C, SMARCA4, and EOMES in trophoblast stem cell maintenancePreprint

Kidder, B. L., & Palmer, S. S. (2010) · Genome Research · doi:10.1101/gr.101469.109 · Cited by 127

Genome-Level Longitudinal Expression of Signaling Pathways and Gene Networks in Pediatric Septic Shock

Shanley, T. P., Cvijanovich, N. Z., Lin, R., Allen, G. L., Thomas, N. J., Doctor, A., Kalyanaraman, M., Tofil, N. M., Penfil, S., Monaco, M., et al. (2007) · Molecular Medicine · doi:10.2119/2007-00065.shanley · Cited by 128

Microbiome and immunological interactions

Kelly, D., & Mulder, I. E. (2012) · Nutrition Reviews · doi:10.1111/j.1753-4887.2012.00498.x · Cited by 131

Rbfox Splicing Factors Promote Neuronal Maturation and Axon Initial Segment Assembly

Jacko, M., Weyn‐Vanhentenryck, S. M., Smerdon, J. W., Yan, R., Feng, H., Williams, D. J., Pai, J. A., Xu, K., Wichterle, H., & Zhang, C. (2018) · Neuron · doi:10.1016/j.neuron.2018.01.020 · Cited by 131

PHYTOCHROME-INTERACTING FACTORS Interact with the ABA Receptors PYL8 and PYL9 to Orchestrate ABA Signaling in Darkness

Qi, L., Liu, S., Li, C., Jing-ying, F. U., Jing, Y., Cheng, J., Li, H., Zhang, D., Wang, X., Dong, X., et al. (2020) · Molecular Plant · doi:10.1016/j.molp.2020.02.001 · Cited by 125

Retinoid‐responsive transcriptional changes in epidermal keratinocytes

Lee, D., Stojadinović, O., Krzyzanowska, A. K., Vouthounis, C., Blumenberg, M., & Tomic‐Canic, M. (2009) · Journal of Cellular Physiology · doi:10.1002/jcp.21784 · Cited by 123

FoxO3A promotes metabolic adaptation to hypoxia by antagonizing Myc function

Jensen, K. S., Binderup, T., Jensen, K. T., Therkelsen, I., Borup, R., Nilsson, E., Multhaupt, H. A. B., Bouchard, C., Quistorff, B., Kjær, A., et al. (2011) · The EMBO Journal · doi:10.1038/emboj.2011.323 · Cited by 128

3′-End Sequencing for Expression Quantification (3SEQ) from Archival Tumor Samples

Beck, A. H., Weng, Z., Witten, D., Zhu, S., Foley, J. W., Lacroute, P., Smith, C. L., Tibshirani, R. J., van de Rijn, M., Sidow, A., et al. (2010) · PLoS ONE · doi:10.1371/journal.pone.0008768 · Cited by 126

Chromatin remodeling inactivates activity genes and regulates neural coding

Yang, Y., Yamada, T., Hill, K. K., Hemberg, M., Reddy, N. C., Cho, H. Y., Guthrie, A. N., Oldenborg, A., Heiney, S. A., Ohmae, S., et al. (2016) · Science · doi:10.1126/science.aad4225 · Cited by 125

Identification of hub genes and potential molecular mechanisms in gastric cancer by integrated bioinformatics analysis

Cao, L., Chen, Y., Zhang, M., Xu, D.-Q., Liu, Y., Liu, T., Liu, S.-X., & Wang, P. (2018) · PeerJ · doi:10.7717/peerj.5180 · Cited by 124

H3K27ac bookmarking promotes rapid post-mitotic activation of the pluripotent stem cell program without impacting 3D chromatin reorganization

Pelham‐Webb, B., Polyzos, A., Wojenski, L., Kloetgen, A., Li, J., Giammartino, D. C. D., Sakellaropoulos, T., Tsirigos, A., Core, L. J., & Apostolou, E. (2021) · Molecular Cell · doi:10.1016/j.molcel.2021.02.032 · Cited by 121

Kruppel-like factor 5 is required for perinatal lung morphogenesis and function

Wan, H., Luo, F., Wert, S. E., Zhang, L., Xu, Y. J., Ikegami, M., Maeda, Y., Bell, S. M., & Whitsett, J. A. (2008) · Development · doi:10.1242/dev.021964 · Cited by 124

Genomic and Functional Studies of Drosophila Sex Hierarchy Regulated Gene Expression in Adult Head and Nervous System Tissues

Goldman, T. D., & Arbeitman, M. N. (2007) · PLoS Genetics · doi:10.1371/journal.pgen.0030216 · Cited by 121

Pathway and network analysis in proteomics

Wu, X., Hasan, M. A., & Chen, J. Y. (2014) · Journal of Theoretical Biology · doi:10.1016/j.jtbi.2014.05.031 · Cited by 128

Radiation-induced epigenetic alterations after low and high LET irradiations

Aypar, U., Morgan, W. F., & Baulch, J. E. (2010) · Mutation research. Fundamental and molecular mechanisms of mutagenesis · doi:10.1016/j.mrfmmm.2010.12.003 · Cited by 129

Methylation profiling with a panel of cancer related genes: Association with estrogen receptor, TP53 mutation status and expression subtypes in sporadic breast cancer

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