The DOI matches its Crossref record; 19 of the 19 references it cites were found in a registry or an index.
ISsaga is an ensemble of web-based methods for high throughput identification and semi-automatic annotation of insertion sequences in prokaryotic genomes
Open accessAbstract
Insertion sequences (ISs) play a key role in prokaryotic genome evolution but are seldom well annotated. We describe a web application pipeline, ISsaga (http://issaga.biotoul.fr/ISsaga/issaga_index.php), that provides computational tools and methods for high-quality IS annotation. It uses established ISfinder annotation standards and permits rapid processing of single or multiple prokaryote genomes. ISsaga provides general prediction and annotation tools, information on genome context of individual ISs and a graphical overview of IS distribution around the genome of interest.
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Cites
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Cited by
Johansson, M. H. K., Bortolaia, V., Tansirichaiya, S., Aarestrup, F. M., Roberts, A. P., & Petersen, T. N. (2021) · Journal of Antimicrobial Chemotherapy · doi:10.1093/jac/dkaa390 · Cited by 725
ISEScan: automated identification of insertion sequence elements in prokaryotic genomes
Xie, Z., & Tang, H. (2017) · Bioinformatics · doi:10.1093/bioinformatics/btx433 · Cited by 489
Vibrio natriegens as a fast-growing host for molecular biology
Weinstock, M. T., Hesek, E. D., Wilson, C. M., & Gibson, D. G. (2016) · Nature Methods · doi:10.1038/nmeth.3970 · Cited by 305
He, S., Hickman, A. B., Varani, A. M., Siguier, P., Chandler, M., Dekker, J. P., & Dyda, F. (2015) · mBio · doi:10.1128/mbio.00762-15 · Cited by 301
Self-citationHussein, M., Sun, Z., Hawkey, J., Allobawi, R., Judd, L. M., Carbone, V., Sharma, R., Thombare, V., Baker, M., Rao, G. G., et al. (2024) · mSystems · doi:10.1128/msystems.00972-23 · Cited by 14
Metadata
- Authors
- Varani, A. M., Siguier, P., Gourbeyre, E., Charneau, V., & Chandler, M.
- Venue
- Genome Biology
- Published
- 2011-03-28
- Volume
- 12
- Issue
- 3
- Pages
- R30-R30
- ISSN
- 1465-6906 (ISSN-L)
- 1474-760X
- OpenAlex
- W2116233885
- Cited by
- 323
- References
- 19
- FWCI
- 3.76
- Type
- journal article
- Language
- en
- Open access
- gold
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- Varani, A. M., Siguier, P., Gourbeyre, E., Charneau, V., & Chandler, M. (2011). ISsaga is an ensemble of web-based methods for high throughput identification and semi-automatic annotation of insertion sequences in prokaryotic genomes. Genome Biology. https://doi.org/10.1186/gb-2011-12-3-r30
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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