Transcriptomic analysis of salt tolerance-associated genes and diversity analysis using indel markers in yardlong bean (vigna unguiculata ssp. sesquipedialis)
Open accessAbstract
BACKGROUND: High salinity is a devastating abiotic stresses for crops. To understand the molecular basis of salinity stress in yardlong bean (Vigna unguiculata ssp. sesquipedalis), and to develop robust markers for improving this trait in germplasm, whole transcriptome RNA sequencing (RNA-seq) was conducted to compare the salt-tolerant variety Suzi 41 and salt-sensitive variety Sujiang 1419 under normal and salt stress conditions. RESULTS: Compared with controls, 417 differentially expressed genes (DEGs) were identified under exposure to high salinity, including 42 up- and 11 down-regulated DEGs in salt-tolerant Suzi 41 and 186 up- and 197 down-regulated genes in salt-sensitive Sujiang 1419, validated by qRT-PCR. DEGs were enriched in "Glycolysis/Gluconeogenesis" (ko00010), "Cutin, suberine and wax biosynthesis" (ko00073), and "phenylpropanoid biosynthesis" (ko00940) in Sujiang 1419, although "cysteine/methionine metabolism" (ko00270) was the only pathway significantly enriched in salt-tolerant Suzi 41. Notably, AP2/ERF, LR48, WRKY, and bHLH family transcription factors (TFs) were up-regulated under high salt conditions. Genetic diversity analysis of 84 yardlong bean accessions using 26 InDel markers developed here could distinguish salt-tolerant and salt-sensitive varieties. CONCLUSIONS: These findings show a limited set of DEGs, primarily TFs, respond to salinity stress in V. unguiculata, and that these InDels associated with salt-inducible loci are reliable for diversity analysis.
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Manipulating the CqEXPA50 gene in quinoa enhances salt tolerance by improving cell expansion and osmotic adjustment.
“Additionally, the role of auxin in salt tolerance has been explored through the CqEXPA50 gene identified in quinoa. Manipulating this gene, which is involved in auxin-mediated responses, enhances salt tolerance by improving cell expansion and osmotic adjustment (Sun et al., 2022; Zhang et al., 2021).”
From Emerging applications of gene editing technologies for the development of climate-resilient crops (2025) · cites this paper as Zhang et al., 2021
The Abstract Results and Discussion describe salt-response genes in yardlong bean, not CqEXPA50 in quinoa. Searches for CqEXPA50, quinoa, cell expansion, and osmotic adjustment found no passage linking manipulation of that gene to improved salt tolerance. (LLM, conf=0.76)
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- Authors
- Zhang, H., Xu, W., Chen, H., Chen, J., Liu, X., Chen, X., & Yang, S.
- Affiliations
- Nanjing Agricultural University (CN)
- Jiangsu Academy of Agricultural Sciences (CN)
- Corresponding author
- Chen, Xin
- Yang, Shouping
- Venue
- BMC Genomic Data
- Published
- 2021-09-16
- Volume
- 22
- Issue
- 1
- Pages
- 34-34
- ISSN
- 2730-6844 (ISSN-L)
- PMC
- PMC8447766
- OpenAlex
- W3200394444
- Cited by
- 15
- References
- 77
- Citations by year
- 2026: 1 · 2025: 5 · 2024: 5 · 2023: 3 · 2022: 1
- FWCI
- 1.35
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- BMC Genomic Data (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, other-oa)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Funders
- Jiangsu Agricultural Science and Technology Innovation Fund (CX(20)3161, CARS-09, CX(20))
- Agriculture Research System of China (CARS-09)
- Topics
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Stress Responses and Tolerance
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Genetic and Environmental Crop Studies
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Agricultural pest management studies
- Keywords
- yardlong bean, salt tolerance, salt stress, differentially expressed genes, transcription factors, AP2/ERF, WRKY, bHLH, InDel markers, genetic diversity, germplasm, glycolysis/gluconeogenesis, phenylpropanoid biosynthesis
- MeSH terms
- Vigna, Genetic Markers, Transcription Factors, Gene Expression Profiling, INDEL Mutation, Salt Tolerance, Transcriptome
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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