ATAD3 controls mitochondrial cristae structure in mouse muscle, influencing mtDNA replication and cholesterol levels
Open accessAbstract
Mutations in the mitochondrial inner membrane ATPase ATAD3A result in neurological syndromes in humans. In mice, the ubiquitous disruption of Atad3 (also known as Atad3a) was embryonic lethal, but a skeletal muscle-specific conditional knockout (KO) was viable. At birth, ATAD3 muscle KO mice had normal weight, but from 2 months onwards they showed progressive motor-impaired coordination and weakness. Loss of ATAD3 caused early and severe mitochondrial structural abnormalities, mitochondrial proliferation and muscle atrophy. There was dramatic reduction in mitochondrial cristae junctions and overall cristae morphology. The lack of mitochondrial cristae was accompanied by a reduction in high molecular weight mitochondrial contact site and cristae organizing system (MICOS) complexes, and to a lesser extent in OPA1. Moreover, muscles lacking ATAD3 showed altered cholesterol metabolism, accumulation of mitochondrial DNA (mtDNA) replication intermediates, progressive mtDNA depletion and deletions. Unexpectedly, decreases in the levels of some OXPHOS components occurred after cristae destabilization, indicating that ATAD3 is not crucial for mitochondrial translation, as previously suggested. Our results show a critical early role of ATAD3 in regulating mitochondrial inner membrane structure, leading to secondary defects in mtDNA replication and complex V and cholesterol levels in postmitotic tissue. This article has an associated First Person interview with the first author of the paper.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
ATAD3 regulates mitochondrial cristae architecture and the removal of mitochondrial DNA.
“ATAD3 also regulates mitochondrial cristae architecture (55) and the removal of mitochondrial DNA (56).”
From Alzheimer's Disease–Associated Amyloid-β Precursor Protein Prevents Aging Stress–Induced Mitophagy and Fumarate Depletion to Improve Antitumor Immunity (2025) · cites this paper as [55]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
A RAPID METHOD OF TOTAL LIPID EXTRACTION AND PURIFICATION
Bligh, E. G., & Dyer, W. J. (1959) · Canadian Journal of Biochemistry and Physiology · doi:10.1139/o59-099 · Cited by 54,751 · see citing works
OPA1 Controls Apoptotic Cristae Remodeling Independently from Mitochondrial Fusion
Frezza, C., Cipolat, S., Martins de Brito, O., Micaroni, M., Beznoussenko, G. V., Rudka, T., Bartoli, D., Polishuck, R. S., Danial, N. N., De Strooper, B., et al. (2006) · Cell · doi:10.1016/j.cell.2006.06.025 · Cited by 1,673 · see citing works
Wang, J., Wilhelmsson, H., Graff, C., Li, H., Oldfors, A., Rustin, P., Brüning, J. C., Kahn, C. R., Clayton, D. A., Barsh, G. S., et al. (1999) · Nature Genetics · doi:10.1038/5089 · Cited by 435 · see citing works
Tyynismaa, H., Mjosund, K. P., Wanrooij, S., Lappalainen, I., Ylikallio, E., Jalanko, A., Spelbrink, J. N., Paetau, A., & Suomalainen, A. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0505551102 · Cited by 342 · see citing works
The expression of myosin genes in developing skeletal muscle in the mouse embryo.
Lyons, G. E., Ontell, M., Cox, R., Sassoon, D., & Buckingham, M. (1990) · The Journal of cell biology · doi:10.1083/jcb.111.4.1465 · Cited by 270 · see citing works
Opa1 Overexpression Ameliorates the Phenotype of Two Mitochondrial Disease Mouse Models
Civiletto, G., Varanita, T., Cerutti, R., Gorletta, T., Barbaro, S., Marchet, S., Lamperti, C., Viscomi, C., Scorrano, L., & Zeviani, M. (2015) · Cell Metabolism · doi:10.1016/j.cmet.2015.04.016 · Cited by 216 · see citing works
Milenkovic, D., Matic, S., Kuhl, I., Ruzzenente, B., Freyer, C., Jemt, E., Park, C. B., Falkenberg, M., & Larsson, N.-G. (2013) · Human Molecular Genetics · doi:10.1093/hmg/ddt051 · Cited by 173 · see citing works
Issop, L., Fan, J., Lee, S., Rone, M. B., Basu, K., Mui, J., & Papadopoulos, V. (2015) · Endocrinology · doi:10.1210/en.2014-1503 · Cited by 147 · see citing works
Flagged first, then by citations
Research works printed but not linked: 75
- Barrientos A., Fontanesi F. and Diaz F. (2009). Evaluation of the mitochondrial respiratory chain and oxidative phosphorylation system using polarography and spectrophotometric enzyme assays. Curr. Protoc. Hum. Genet. 63, 19.3.1-19.3.14. 10.1002/0471142905.hg1903s63 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- Baudier J. (2017). ATAD3 proteins: brokers of a mitochondria-endoplasmic reticulum connection in mammalian cells. Biol. Rev. Camb. Philos. Soc. 93, 827-844. 10.1111/brv.12373 [DOI] [PubMed] [Google Scholar] · DOI · Paper page
- Bogenhagen D. F., Rousseau D. and Burke S. (2008). The layered structure of human mitochondrial DNA nucleoids. J. Biol. Chem. 283, 3665-3675. 10.1074/jbc.M708444200 [DOI] [PubMed] [Google Scholar] · DOI
- Bothe G. W., Haspel J. A., Smith C. L., Wiener H. H. and Burden S. J. (2000). Selective expression of Cre recombinase in skeletal muscle fibers. Genesis 26, 165-166. 10.1002/(SICI)1526-968X(200002)26:2<165::AID-GENE22>3.0.CO;2-F [DOI] [PubMed] [Google Scholar] · DOI
- Brewer B. J. and Fangman W. L. (1987). The localization of replication origins on ARS plasmids in S. cerevisiae. Cell 51, 463-471. 10.1016/0092-8674(87)90642-8 [DOI] [PubMed] [Google Scholar] · DOI
- Cámara Y., Asin-Cayuela J., Park C. B., Metodiev M. D., Shi Y., Ruzzenente B., Kukat C., Habermann B., Wibom R., Hultenby K. et al. (2011). MTERF4 regulates translation by targeting the methyltransferase NSUN4 to the mammalian mitochondrial ribosome. Cell Metab. 13, 527-539. 10.1016/j.cmet.2011.04.002 [DOI] [PubMed] [Google Scholar] · DOI
- Carrozzo R., Wittig I., Santorelli F. M., Bertini E., Hofmann S., Brandt U. and Schägger H. (2006). Subcomplexes of human ATP synthase mark mitochondrial biosynthesis disorders. Ann. Neurol. 59, 265-275. 10.1002/ana.20729 [DOI] [PubMed] [Google Scholar] · DOI
- Chacinska A., Koehler C. M., Milenkovic D., Lithgow T. and Pfanner N. (2009). Importing mitochondrial proteins: machineries and mechanisms. Cell 138, 628-644. 10.1016/j.cell.2009.08.005 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- Chan R. B., Oliveira T. G., Cortes E. P., Honig L. S., Duff K. E., Small S. A., Wenk M. R., Shui G. and Di Paolo G. (2012). Comparative lipidomic analysis of mouse and human brain with Alzheimer disease. J. Biol. Chem. 287, 2678-2688. 10.1074/jbc.M111.274142 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI · Paper page
- Chen H., Vermulst M., Wang Y. E., Chomyn A., Prolla T. A., McCaffery J. M. and Chan D. C. (2010). Mitochondrial fusion is required for mtDNA stability in skeletal muscle and tolerance of mtDNA mutations. Cell 141, 280-289. 10.1016/j.cell.2010.02.026 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI · Paper page
- Cogliati S., Frezza C., Soriano M. E., Varanita T., Quintana-Cabrera R., Corrado M., Cipolat S., Costa V., Casarin A., Gomes L. C. et al. (2013). Mitochondrial cristae shape determines respiratory chain supercomplexes assembly and respiratory efficiency. Cell 155, 160-171. 10.1016/j.cell.2013.08.032 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI · Paper page
- Cogliati S., Enriquez J. A. and Scorrano L. (2016). Mitochondrial cristae: where beauty meets functionality. Trends Biochem. Sci. 41, 261-273. 10.1016/j.tibs.2016.01.001 [DOI] [PubMed] [Google Scholar] · DOI · Paper page
- Cooper H. M., Yang Y., Ylikallio E., Khairullin R., Woldegebriel R., Lin K.-L., Euro L., Palin E., Wolf A., Trokovic R. et al. (2017). ATPase-deficient mitochondrial inner membrane protein ATAD3A disturbs mitochondrial dynamics in dominant hereditary spastic paraplegia. Hum. Mol. Genet. 26, 1432-1443. 10.1093/hmg/ddx042 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- Davies K. M., Strauss M., Daum B., Kief J. H., Osiewacz H. D., Rycovska A., Zickermann V. and Kuhlbrandt W. (2011). Macromolecular organization of ATP synthase and complex I in whole mitochondria. Proc. Natl. Acad. Sci. USA 108, 14121-14126. 10.1073/pnas.1103621108 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- Davies K. M., Anselmi C., Wittig I., Faraldo-Gomez J. D. and Kuhlbrandt W. (2012). Structure of the yeast F1Fo-ATP synthase dimer and its role in shaping the mitochondrial cristae. Proc. Natl. Acad. Sci. USA 109, 13602-13607. 10.1073/pnas.1204593109 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI · Paper page
- Desai R., Frazier A. E., Durigon R., Patel H., Jones A. W., Dalla Rosa I., Lake N. J., Compton A. G., Mountford H. S., Tucker E. J. et al. (2017). ATAD3 gene cluster deletions cause cerebellar dysfunction associated with altered mitochondrial DNA and cholesterol metabolism. Brain 140, 1595-1610. 10.1093/brain/awx094 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- Diaz F., Barrientos A. and Fontanesi F. (2009). Evaluation of the mitochondrial respiratory chain and oxidative phosphorylation system using blue native gel electrophoresis. Curr. Protoc. Hum. Genet. 63, 19.4.1-19.4.12. 10.1002/0471142905.hg1904s63 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- Dogan S. A., Pujol C., Maiti P., Kukat A., Wang S., Hermans S., Senft K., Wibom R., Rugarli E. I. and Trifunovic A. (2014). Tissue-specific loss of DARS2 activates stress responses independently of respiratory chain deficiency in the heart. Cell Metab. 19, 458-469. 10.1016/j.cmet.2014.02.004 [DOI] [PubMed] [Google Scholar] · DOI
- Elachouri G., Vidoni S., Zanna C., Pattyn A., Boukhaddaoui H., Gaget K., Yu-Wai-Man P., Gasparre G., Sarzi E., Delettre C. et al. (2011). OPA1 links human mitochondrial genome maintenance to mtDNA replication and distribution. Genome Res. 21, 12-20. 10.1101/gr.108696.110 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- Fang H. Y., Chang C.-L., Hsu S.-H., Huang C.-Y., Chiang S.-F., Chiou S.-H., Huang C.-H., Hsiao Y.-T., Lin T.-Y., Chiang I.-P. et al. (2010). ATPase family AAA domain-containing 3A is a novel anti-apoptotic factor in lung adenocarcinoma cells. J. Cell Sci. 123, 1171-1180. 10.1242/jcs.062034 [DOI] [PubMed] [Google Scholar] · DOI
- Frickey T. and Lupas A. N. (2004). Phylogenetic analysis of AAA proteins. J. Struct. Biol. 146, 2-10. 10.1016/j.jsb.2003.11.020 [DOI] [PubMed] [Google Scholar] · DOI
- Friedman K. L. and Brewer B. J. (1995). Analysis of replication intermediates by two-dimensional agarose gel electrophoresis. Methods Enzymol. 262, 613-627. 10.1016/0076-6879(95)62048-6 [DOI] [PubMed] [Google Scholar] · DOI
- Gerhold J. M., Cansiz-Arda S., Lõhmus M., Engberg O., Reyes A., van Rennes H., Sanz A., Holt I. J., Cooper H. M. and Spelbrink J. N. (2015). Human mitochondrial DNA-protein complexes attach to a cholesterol-rich membrane structure. Sci. Rep. 5, 15292 10.1038/srep15292 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- Gilkerson R. W., Selker J. M. L. and Capaldi R. A. (2003). The cristal membrane of mitochondria is the principal site of oxidative phosphorylation. FEBS Lett. 546, 355-358. 10.1016/S0014-5793(03)00633-1 [DOI] [PubMed] [Google Scholar] · DOI
- Gilquin B., Taillebourg E., Cherradi N., Hubstenberger A., Gay O., Merle N., Assard N., Fauvarque M. O., Tomohiro S., Kuge O. et al. (2010). The AAA+ ATPase ATAD3A controls mitochondrial dynamics at the interface of the inner and outer membranes. Mol. Cell. Biol. 30, 1984-1996. 10.1128/MCB.00007-10 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI · Paper page
- Glytsou C., Calvo E., Cogliati S., Mehrotra A., Anastasia I., Rigoni G., Raimondi A., Shintani N., Loureiro M., Vazquez J. et al. (2016). Optic atrophy 1 is epistatic to the core MICOS component MIC60 in mitochondrial cristae shape control. Cell Rep. 17, 3024-3034. 10.1016/j.celrep.2016.11.049 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- Goffart S., Cooper H. M., Tyynismaa H., Wanrooij S., Suomalainen A. and Spelbrink J. N. (2009). Twinkle mutations associated with autosomal dominant progressive external ophthalmoplegia lead to impaired helicase function and in vivo mtDNA replication stalling. Hum. Mol. Genet. 18, 328-340. 10.1093/hmg/ddn359 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI · Paper page
- Goller T., Seibold U. K., Kremmer E., Voos W. and Kolanus W. (2013). Atad3 function is essential for early post-implantation development in the mouse. PLoS One 8, e54799 10.1371/journal.pone.0054799 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- Gorman G. S., Chinnery P. F., DiMauro S., Hirano M., Koga Y., McFarland R., Suomalainen A., Thorburn D. R., Zeviani M. and Turnbull D. M. (2016). Mitochondrial diseases. Nat. Rev. Dis. Primers 2, 16080 10.1038/nrdp.2016.80 [DOI] [PubMed] [Google Scholar] · DOI
- Harel T., Yoon W. H., Garone C., Gu S., Coban-Akdemir Z., Eldomery M. K., Posey J. E., Jhangiani S. N., Rosenfeld J. A., Cho M. T. et al. (2016). Recurrent de novo and biallelic variation of ATAD3A, encoding a mitochondrial membrane protein, results in distinct neurological syndromes. Am. J. Hum. Genet. 99, 831-845. 10.1016/j.ajhg.2016.08.007 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- Härmälä A. S., Porn M. I., Mattjus P. and Slotte J. P. (1994). Cholesterol transport from plasma membranes to intracellular membranes is inhibited by 3 beta-[2-(diethylamino)ethoxy]androst-5-en-17-one. Biochim. Biophys. Acta 1211, 317-325. 10.1016/0005-2760(94)90156-2 [DOI] [PubMed] [Google Scholar] · DOI
- Harner M., Körner C., Walther D., Mokranjac D., Kaesmacher J., Welsch U., Griffith J., Mann M., Reggiori F. and Neupert W. (2011). The mitochondrial contact site complex, a determinant of mitochondrial architecture. EMBO J. 30, 4356-4370. 10.1038/emboj.2011.379 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- He J., Mao C.-C., Reyes A., Sembongi H., Di Re M., Granycome C., Clippingdale A. B., Fearnley I. M., Harbour M., Robinson A. J. et al. (2007). The AAA+ protein ATAD3 has displacement loop binding properties and is involved in mitochondrial nucleoid organization. J. Cell Biol. 176, 141-146. 10.1083/jcb.200609158 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- He J., Cooper H. M., Reyes A., Di Re M., Sembongi H., Litwin T. R., Gao J., Neuman K. C., Fearnley I. M., Spinazzola A. et al. (2012). Mitochondrial nucleoid interacting proteins support mitochondrial protein synthesis. Nucleic Acids Res. 40, 6109-6121. 10.1093/nar/gks266 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- Hoffmann M., Bellance N., Rossignol R., Koopman W. J., Willems P. H., Mayatepek E., Bossinger O. and Distelmaier F. (2009). C. elegans ATAD-3 is essential for mitochondrial activity and development. PLoS One 4, e7644. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Holt I. J., He J., Mao C.-C., Boyd-Kirkup J. D., Martinsson P., Sembongi H., Reyes A. and Spelbrink J. N. (2007). Mammalian mitochondrial nucleoids: organizing an independently minded genome. Mitochondrion 7, 311-321. 10.1016/j.mito.2007.06.004 [DOI] [PubMed] [Google Scholar] · DOI
- Hoppins S., Collins S. R., Cassidy-Stone A., Hummel E., Devay R. M., Lackner L. L., Westermann B., Schuldiner M., Weissman J. S. and Nunnari J. (2011). A mitochondrial-focused genetic interaction map reveals a scaffold-like complex required for inner membrane organization in mitochondria. J. Cell Biol. 195, 323-340. 10.1083/jcb.201107053 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- Hubstenberger A., Labourdette G., Baudier J. and Rousseau D. (2008). ATAD 3A and ATAD 3B are distal 1p-located genes differentially expressed in human glioma cell lines and present in vitro anti-oncogenic and chemoresistant properties. Exp. Cell Res. 314, 2870-2883. 10.1016/j.yexcr.2008.06.017 [DOI] [PubMed] [Google Scholar] · DOI
- Hubstenberger A., Merle N., Charton R., Brandolin G. and Rousseau D. (2010). Topological analysis of ATAD3A insertion in purified human mitochondria. J. Bioenerg. Biomembr. 42, 143-150. 10.1007/s10863-010-9269-8 [DOI] [PubMed] [Google Scholar] · DOI
- Iaea D. B. and Maxfield F. R. (2015). Cholesterol trafficking and distribution. Essays Biochem. 57, 43-55. 10.1042/bse0570043 [DOI] [PubMed] [Google Scholar] · DOI
- Iommarini L., Peralta S., Torraco A. and Diaz F. (2015). Mitochondrial Diseases Part II: mouse models of OXPHOS deficiencies caused by defects in regulatory factors and other components required for mitochondrial function. Mitochondrion 22, 96-118. 10.1016/j.mito.2015.01.008 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- John G. B., Shang Y., Li L., Renken C., Mannella C. A., Selker J. M. L., Rangell L., Bennett M. J. and Zha J. (2005). The mitochondrial inner membrane protein mitofilin controls cristae morphology. Mol. Biol. Cell 16, 1543-1554. 10.1091/mbc.e04-08-0697 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- Lehtonen J. M., Forsstrom S., Bottani E., Viscomi C., Baris O. R., Isoniemi H., Hockerstedt K., Osterlund P., Hurme M., Jylhava J. et al. (2016). FGF21 is a biomarker for mitochondrial translation and mtDNA maintenance disorders. Neurology 87, 2290-2299. 10.1212/WNL.0000000000003374 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI · Paper page
- Lewis S. C., Uchiyama L. F. and Nunnari J. (2016). ER-mitochondria contacts couple mtDNA synthesis with mitochondrial division in human cells. Science 353, aaf5549 10.1126/science.aaf5549 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI · Paper page
- Li S. and Rousseau D. (2012). ATAD3, a vital membrane bound mitochondrial ATPase involved in tumor progression. J. Bioenerg. Biomembr. 44, 189-197. 10.1007/s10863-012-9424-5 [DOI] [PubMed] [Google Scholar] · DOI
- Li S., Lamarche F., Charton R., Delphin C., Gires O., Hubstenberger A., Schlattner U. and Rousseau D. (2014). Expression analysis of ATAD3 isoforms in rodent and human cell lines and tissues. Gene 535, 60-69. 10.1016/j.gene.2013.10.062 [DOI] [PubMed] [Google Scholar] · DOI
- Li H., Ruan Y., Zhang K., Jian F., Hu C., Miao L., Gong L., Sun L., Zhang X., Chen S. et al. (2016). Mic60/Mitofilin determines MICOS assembly essential for mitochondrial dynamics and mtDNA nucleoid organization. Cell Death Differ. 23, 380-392. 10.1038/cdd.2015.102 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- Metodiev M. D., Lesko N., Park C. B., Cámara Y., Shi Y., Wibom R., Hultenby K., Gustafsson C. M. and Larsson N. G. (2009). Methylation of 12S rRNA is necessary for in vivo stability of the small subunit of the mammalian mitochondrial ribosome. Cell Metab. 9, 386-397. 10.1016/j.cmet.2009.03.001 [DOI] [PubMed] [Google Scholar] · DOI
- Mourier A., Ruzzenente B., Brandt T., Kuhlbrandt W. and Larsson N. G. (2014). Loss of LRPPRC causes ATP synthase deficiency. Hum. Mol. Genet. 23, 2580-2592. 10.1093/hmg/ddt652 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- Neuhaus J. F. G., Baris O. R., Hess S., Moser N., Schroder H., Chinta S. J., Andersen J. K., Kloppenburg P. and Wiesner R. J. (2014). Catecholamine metabolism drives generation of mitochondrial DNA deletions in dopaminergic neurons. Brain 137, 354-365. 10.1093/brain/awt291 [DOI] [PubMed] [Google Scholar] · DOI
- Odgren P. R., Toukatly G., Bangs P. L., Gilmore R. and Fey E. G. (1996). Molecular characterization of mitofilin (HMP), a mitochondria-associated protein with predicted coiled coil and intermembrane space targeting domains. J. Cell Sci. 109, 2253-2264. [DOI] [PubMed] [Google Scholar]
- Park C. B., Asin-Cayuela J., Camara Y., Shi Y., Pellegrini M., Gaspari M., Wibom R., Hultenby K., Erdjument-Bromage H., Tempst P. et al. (2007). MTERF3 is a negative regulator of mammalian mtDNA transcription. Cell 130, 273-285. 10.1016/j.cell.2007.05.046 [DOI] [PubMed] [Google Scholar] · DOI
- Peralta S., Garcia S., Yin H. Y., Arguello T., Diaz F. and Moraes C. T. (2016). Sustained AMPK activation improves muscle function in a mitochondrial myopathy mouse model by promoting muscle fiber regeneration. Hum. Mol. Genet. 25, 3178-3191. 10.1093/hmg/ddw167 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- Pfanner N., van der Laan M., Amati P., Capaldi R. A., Caudy A. A., Chacinska A., Darshi M., Deckers M., Hoppins S., Icho T. et al. (2014). Uniform nomenclature for the mitochondrial contact site and cristae organizing system. J. Cell Biol. 204, 1083-1086. 10.1083/jcb.201401006 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- Pohjoismäki J. L., Goffart S. and Spelbrink J. N. (2011). Replication stalling by catalytically impaired Twinkle induces mitochondrial DNA rearrangements in cultured cells. Mitochondrion 11, 630-634. 10.1016/j.mito.2011.04.002 [DOI] [PubMed] [Google Scholar] · DOI
- Rebelo A. P., Williams S. L. and Moraes C. T. (2009). In vivo methylation of mtDNA reveals the dynamics of protein-mtDNA interactions. Nucleic Acids Res. 37, 6701-6715. 10.1093/nar/gkp727 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- Rowland L. P., Blake D. M., Hirano M., Di Mauro S., Schon E. A., Hays A. P. and Devivo D. C. (1991). Clinical syndromes associated with ragged red fibers. Rev. Neurol. (Paris) 147, 467-473. [PubMed] [Google Scholar]
- Schaffrik M., Mack B., Matthias C., Rauch J. and Gires O. (2006). Molecular characterization of the tumor-associated antigen AAA-TOB3. Cell. Mol. Life Sci. 63, 2162-2174. 10.1007/s00018-006-6200-x [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- Schmalbruch H. and Hellhammer U. (1977). The number of nuclei in adult rat muscles with special reference to satellite cells. Anat. Rec. 189, 169-175. 10.1002/ar.1091890204 [DOI] [PubMed] [Google Scholar] · DOI
- Slotte J. P., Härmälä A. S., Jansson C. and Porn M. I. (1990). Rapid turn-over of plasma membrane sphingomyelin and cholesterol in baby hamster kidney cells after exposure to sphingomyelinase. Biochim. Biophys. Acta 1030, 251-257. 10.1016/0005-2736(90)90301-4 [DOI] [PubMed] [Google Scholar] · DOI
- Spinazzi M., Casarin A., Pertegato V., Salviati L. and Angelini C. (2012). Assessment of mitochondrial respiratory chain enzymatic activities on tissues and cultured cells. Nat. Protoc. 7, 1235-1246. 10.1038/nprot.2012.058 [DOI] [PubMed] [Google Scholar] · DOI
- Srivastava S. and Moraes C. T. (2005). Double-strand breaks of mouse muscle mtDNA promote large deletions similar to multiple mtDNA deletions in humans. Hum. Mol. Genet. 14, 893-902. 10.1093/hmg/ddi082 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- Suomalainen A., Majander A., Haltia M., Somer H., Lönnqvist J., Savontaus M. L. and Peltonen L. (1992). Multiple deletions of mitochondrial DNA in several tissues of a patient with severe retarded depression and familial progressive external ophthalmoplegia. J. Clin. Invest. 90, 61-66. 10.1172/JCI115856 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- Szczepanowska K., Maiti P., Kukat A., Hofsetz E., Nolte H., Senft K., Becker C., Ruzzenente B., Hornig-Do H. T., Wibom R. et al. (2016). CLPP coordinates mitoribosomal assembly through the regulation of ERAL1 levels. EMBO J. 35, 2566-2583. 10.15252/embj.201694253 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- Vogel F., Bornhövd C., Neupert W. and Reichert A. S. (2006). Dynamic subcompartmentalization of the mitochondrial inner membrane. J. Cell Biol. 175, 237-247. 10.1083/jcb.200605138 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- von der Malsburg K., Muller J. M., Bohnert M., Oeljeklaus S., Kwiatkowska P., Becker T., Loniewska-Lwowska A., Wiese S., Rao S., Milenkovic D. et al. (2011). Dual role of mitofilin in mitochondrial membrane organization and protein biogenesis. Dev. Cell 21, 694-707. 10.1016/j.devcel.2011.08.026 [DOI] [PubMed] [Google Scholar] · DOI
- Wang Y. and Bogenhagen D. F. (2006). Human mitochondrial DNA nucleoids are linked to protein folding machinery and metabolic enzymes at the mitochondrial inner membrane. J. Biol. Chem. 281, 25791-25802. 10.1074/jbc.M604501200 [DOI] [PubMed] [Google Scholar] · DOI
- Wanrooij S., Luoma P., van Goethem G., van Broeckhoven C., Suomalainen A. and Spelbrink J. N. (2004). Twinkle and POLG defects enhance age-dependent accumulation of mutations in the control region of mtDNA. Nucleic Acids Res. 32, 3053-3064. 10.1093/nar/gkh634 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- Wanrooij S., Goffart S., Pohjoismäki J. L., Yasukawa T. and Spelbrink J. N. (2007). Expression of catalytic mutants of the mtDNA helicase Twinkle and polymerase POLG causes distinct replication stalling phenotypes. Nucleic Acids Res. 35, 3238-3251. 10.1093/nar/gkm215 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI · Paper page
- Wiedemann N. and Pfanner N. (2017). Mitochondrial machineries for protein import and assembly. Annu. Rev. Biochem. 86, 685-714. 10.1146/annurev-biochem-060815-014352 [DOI] [PubMed] [Google Scholar] · DOI
- Williams S. L., Huang J., Edwards Y. J. K., Ulloa R. H., Dillon L. M., Prolla T. A., Vance J. M., Moraes C. T. and Züchner S. (2010). The mtDNA mutation spectrum of the progeroid Polg mutator mouse includes abundant control region multimers. Cell Metab. 12, 675-682. 10.1016/j.cmet.2010.11.012 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- Williams S. L., Mash D. C., Züchner S. and Moraes C. T. (2013). Somatic mtDNA mutation spectra in the aging human putamen. PLoS Genet. 9, e1003990 10.1371/journal.pgen.1003990 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
- Wittig I. and Schägger H. (2005). Advantages and limitations of clear-native PAGE. Proteomics 5, 4338-4346. 10.1002/pmic.200500081 [DOI] [PubMed] [Google Scholar] · DOI
- Wittig I., Braun H. P. and Schagger H. (2006). Blue native PAGE. Nat. Protoc. 1, 418-428. 10.1038/nprot.2006.62 [DOI] [PubMed] [Google Scholar] · DOI
- You W.-C., Chiou S.-H., Huang C.-Y., Chiang S.-F., Yang C.-L., Sudhakar J. N., Lin T.-Y., Chiang I.-P., Shen C.-C., Cheng W.-Y. et al. (2013). Mitochondrial protein ATPase family, AAA domain containing 3A correlates with radioresistance in glioblastoma. Neuro Oncol. 15, 1342-1352. 10.1093/neuonc/not077 [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
Cited by
Sorted by citations
From mitochondria to sarcopenia: role of 17β-estradiol and testosterone
Tian, X., Lou, S., & Shi, R. (2023) · Frontiers in Endocrinology · doi:10.3389/fendo.2023.1156583 · Cited by 54 · see citing works
“Similar to bacterial chromosome, mtDNA is packaged by a series of proteins, including prohibitins, ATPase family AAA domain-containing protein 3 (ATAD3), the mitochondrial transcription factor A (TFAM), and mitochondrial polymerase gamma catalytic subunit (POLG) to form mtDNA-protein complexes called nucleoids (27, 28…”
BackgroundKassir, M. F., Lee, H. G., Oleinik, N. V., Wofford, W., Walton, C., Atilgan, F. C., Janneh, A. H., Chakraborty, P., Calisir, K., Percin, E., et al. (2025) · Cancer Research · doi:10.1158/0008-5472.can-24-4740 · Cited by 10 · see citing works
Lee, S., Munoz-Oreja, M., Villar-Fernandez, M., Goicoechea-Barrenechea, L., Fernandez-Pelayo, U., Perez-Rodriguez, D., Gegg, M., de Arbina, A. L., Spinazzola, A., & Holt, I. J. (2026) · doi:10.64898/2026.08.04.742391
- Authors
- Peralta, S., Goffart, S., Williams, S. L., Diaz, F., Garcia, S., Nissanka, N., Area-Gomez, E., Pohjoismäki, J., & Moraes, C. T.
- Affiliations
- University of Miami (US)
- University of Eastern Finland (FI)
- University of Miami Miller School of Medicine 1 Department of Neurology , , Miami, FL 33136 ,
- Columbia University Medical Center 4 Department of Neurology , , New York, NY 10032 ,
- Venue
- Journal of Cell Science
- Publisher
- The Company of Biologists
- Published
- 2018-07-01
- Volume
- 131
- Issue
- 13
- ISSN
- 0021-9533 (ISSN-L)
- 1477-9137
- PMC
- PMC6051345
- OpenAlex
- W2807984492
- Cited by
- 110
- References
- 8
- Citations by year
- 2026: 14 · 2025: 12 · 2024: 15 · 2023: 18 · 2022: 13 · 2021: 13 · 2020: 10 · 2019: 11 · 2018: 4
- FWCI
- 3.38
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Journal of Cell Science (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- HighWire Press Open Archive (submittedVersion)
- Funders
- National Institute of Neurological Disorders and Stroke (1R01NS079965)
- National Institute on Aging (1R01AG036871)
- National Eye Institute (5R01EY010804)
- National Institutes of Health (P30-EY014801)
- American Heart Association (16PRE30480009)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Mitochondrial Function and Pathology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › ATP Synthase and ATPases Research
- Health Sciences › Medicine › Epidemiology › Autophagy in Disease and Therapy
- Keywords
- inner mitochondrial membrane, mitochondrial cristae, skeletal muscle, mitochondrial DNA replication, mtDNA depletion, MICOS complex, OPA1, cholesterol metabolism, mitochondrial contact sites, muscle atrophy, motor coordination, oxidative phosphorylation, conditional knockout mice
- MeSH terms
- ATPases Associated with Diverse Cellular Activities, Animals, Cholesterol, DNA Replication, DNA, Mitochondrial, Female, Humans, Male, Mitochondria, Muscles, Muscular Diseases, Mice, Knockout, Mitochondrial Proteins, Muscle Development, Mice
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review