The DOI matches its Crossref record; 35 of the 35 references it cites were found in a registry or an index.
New Insights into Metabolic Properties of Marine Bacteria Encoding Proteorhodopsins
Open accessAbstract
Proteorhodopsin phototrophy was recently discovered in oceanic surface waters. In an effort to characterize uncultured proteorhodopsin-exploiting bacteria, large-insert bacterial artificial chromosome (BAC) libraries from the Mediterranean Sea and Red Sea were analyzed. Fifty-five BACs carried diverse proteorhodopsin genes, and we confirmed the function of five. We calculate that proteorhodopsin-exploiting bacteria account for 13% of microorganisms in the photic zone. We further show that some proteorhodopsin-containing bacteria possess a retinal biosynthetic pathway and a reverse sulfite reductase operon, employed by prokaryotes oxidizing sulfur compounds. Thus, these novel phototrophs are an unexpectedly large and metabolically diverse component of the marine microbial surface water.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, S. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3389 · Cited by 73,302
Thompson, J. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.24.4876 · Cited by 38,993
PAUP * [Phylogenetic Analysis Using Parsimony (and Other Methods)]
Cummings, M. P. (2004) · Dictionary of Bioinformatics and Computational Biology · doi:10.1002/0471650129.dob0522 · Cited by 5,215
Environmental genome shotgun sequencing of the sargasso sea
Venter, J. C., Remington, K., Heidelberg, J. F., Halpern, A. L., Rusch, D., Eisen, J. A., Wu, D., Paulsen, I., Nelson, K. E., Nelson, W., et al. (2004) · Science · doi:10.1126/science.1093857 · Cited by 4,376
Oceanic phytoplankton, atmospheric sulphur, cloud albedo and climate
Charlson, R. J., Lovelock, J. E., Andreae, M. O., & Warren, S. G. (1987) · Nature · doi:10.1038/326655a0 · Cited by 4,305
Bacterial Rhodopsin: Evidence for a New Type of Phototrophy in the Sea
Béjà, O., Aravind, L., Koonin, E. V., Suzuki, M. T., Hadd, A., Nguyen, L. P., Jovanovich, S. B., Gates, C. M., Feldman, R. A., Spudich, J. L., et al. (2000) · Science · doi:10.1126/science.289.5486.1902 · Cited by 1,532
Self-citationSAR11 clade dominates ocean surface bacterioplankton communities
Morris, R. M., Rappé, M. S., Connon, S. A., Vergin, K. L., Siebold, W. A., Carlson, C. A., & Giovannoni, S. J. (2002) · Nature · doi:10.1038/nature01240 · Cited by 1,129
Pernthaler, A., Pernthaler, J., & Amann, R. (2002) · Applied and Environmental Microbiology · doi:10.1128/aem.68.6.3094-3101.2002 · Cited by 1,065
Sulfur emissions to the atmosphere from natural sourees
Bates, T. S., Lamb, B. K., Guenther, A., Dignon, J., & Stoiber, R. E. (1992) · Journal of Atmospheric Chemistry · doi:10.1007/bf00115242 · Cited by 826
Proteorhodopsin phototrophy in the ocean
Béjà, O., Spudich, E. N., Spudich, J. L., Leclerc, M., & DeLong, E. F. (2001) · Nature · doi:10.1038/35081051 · Cited by 802
Self-citation
Cited by
Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea
Herlemann, D. P. R., Labrenz, M., Jürgens, K., Bertilsson, S., Waniek, J. J., & Andersson, A. F. (2011) · The ISME Journal · doi:10.1038/ismej.2011.41 · Cited by 2,885
A Bioinformatician's Guide to Metagenomics
Kunin, V., Copeland, A., Lapidus, A., Mavromatis, K., & Hugenholtz, P. (2008) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00009-08 · Cited by 490
Microbial Rhodopsins: Diversity, Mechanisms, and Optogenetic Applications
Govorunova, E. G., Sineshchekov, O. A., Li, H., & Spudich, J. L. (2017) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-101910-144233 · Cited by 363
Self-citationThe microbial ocean from genomes to biomes
DeLong, E. F. (2009) · Nature · doi:10.1038/nature08059 · Cited by 217
Metadata
- Authors
- Sabehi, G., Loy, A., Jung, K.-H., Partha, R., Spudich, J. L., Isaacson, T., Hirschberg, J., Wagner, M., & Béjà, O.
- Venue
- PLoS Biology
- Publisher
- Public Library of Science (PLoS)
- Published
- 2005-07-19
- Volume
- 3
- Issue
- 8
- Pages
- e273
- ISSN
- 1544-9173 (ISSN-L)
- 1545-7885
- OpenAlex
- W2103115373
- Cited by
- 256
- References
- 35
- FWCI
- 7.36
- Type
- journal article
- Language
- en
- Open access
- gold
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: New Insights into Metabolic Properties of Marine Bacteria Encoding Proteorhodopsins. https://app.cochat.ai/papers/10.1371/journal.pbio.0030273
- The paper
- Sabehi, G., Loy, A., Jung, K.-H., Partha, R., Spudich, J. L., Isaacson, T., Hirschberg, J., Wagner, M., & Béjà, O. (2005). New Insights into Metabolic Properties of Marine Bacteria Encoding Proteorhodopsins. PLoS Biology. https://doi.org/10.1371/journal.pbio.0030273
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.