A new approach for using genome scans to detect recent positive selection in the human genome

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Molecular Signatures of Natural Selection

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Positive Natural Selection in the Human Lineage

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Genetic signatures of strong recent positive selection at the lactase gene.

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Genomic scans for selective sweeps using SNP dataPreprint

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A common inversion under selection in Europeans

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Detecting a Local Signature of Genetic Hitchhiking Along a Recombining Chromosome

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Ascertainment bias in studies of human genome-wide polymorphismPreprint

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Signatures of natural selection in the human genome

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A High-Density Admixture Map for Disease Gene Discovery in African Americans

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How reliable are empirical genomic scans for selective sweeps?Preprint

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Global landscape of recent inferred Darwinian selection for Homo sapiens

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Methods to detect selection in populations with applications to the human.

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Genomic regions exhibiting positive selection identified from dense genotype data

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Disentangling the effects of demography and selection in human history.

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Positive selection on the human genome

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A Microsatellite-Based Multilocus Screen for the Identification of Local Selective Sweeps

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Genomic signatures of positive selection in humans and the limits of outlier approachesPreprint

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The Case for Selection at CCR5-Δ32

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Ancient and Recent Positive Selection Transformed Opioid cis-Regulation in Humans

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Controlling the False-Positive Rate in Multilocus Genome Scans for Selection

Thornton, K., & Jensen, J. D. (2006) · Genetics · doi:10.1534/genetics.106.064642 · Cited by 179 · see citing works

A Microsatellite Variability Screen for Positive Selection Associated With the “Out of Africa” Habitat Expansion ofDrosophila melanogaster

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FUNC: a package for detecting significant associations between gene sets and ontological annotations

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Spread of an Inactive Form of Caspase-12 in Humans Is Due to Recent Positive Selection

Xue, Y., Daly, A., Yngvadóttir, B., Liu, M., Coop, G., Kim, Y., Sabeti, P. C., Chen, Y., Stalker, J., Huckle, E. J., et al. (2006) · The American Journal of Human Genetics · doi:10.1086/503116 · Cited by 163 · see citing works

The genetic architecture of normal variation in human pigmentation: an evolutionary perspective and model

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Positive Selection on a Human-Specific Transcription Factor Binding Site Regulating IL4 Expression

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Nucleotide Variability at G6pd and the Signature of Malarial Selection in Humans

Saunders, M. A., Hammer, M. F., & Nachman, M. W. (2002) · Genetics · doi:10.1093/genetics/162.4.1849 · Cited by 123 · see citing works

Genomic evidence for recent positive selection at the human MDR1 gene locus

Tang, K., Wong, L.-P., Lee, E. J. D., Chong, S. S., & Lee, C. G. L. (2004) · Human Molecular Genetics · doi:10.1093/hmg/ddh099 · Cited by 95 · see citing works

Evidence for recent positive selection at the human AIM1 locus in a European population

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Searching for signals of evolutionary selection in 168 genes related to immune function

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A whole genome long-range haplotype (WGLRH) test for detecting imprints of positive selection in human populations

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Evaluating potential for whole-genome studies in Kosrae, an isolated population in Micronesia

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Large-scale recombination rate patterns are conserved among human populationsPreprint

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TRPV6 exhibits unusual patterns of polymorphism and divergence in worldwide populations

Akey, J. M. (2006) · Human Molecular Genetics · doi:10.1093/hmg/ddl134 · Cited by 53 · see citing works

Genome-wide scans for loci under selection in humans

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Coverage and Characteristics of the Affymetrix GeneChip Human Mapping 100K SNP Set

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Maximum-Likelihood Methods for Detecting Recent Positive Selection and Localizing the Selected Site in the Genome

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Genome-wide detection and characterization of positive selection in human populations

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Population differentiation as a test for selective sweepsPreprint

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How culture shaped the human genome: bringing genetics and the human sciences together

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Human ATP-binding cassette (ABC) transporter family

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Detecting loci under selection in a hierarchically structured population

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Signals of recent positive selection in a worldwide sample of human populations

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A Map of Local Adaptation in Arabidopsis thaliana

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Genomic Patterns of Homozygosity in Worldwide Human Populations

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From evolutionary genetics to human immunology: how selection shapes host defence genes

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<i>rehh</i> : an R package to detect footprints of selection in genome-wide SNP data from haplotype structure

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The role of geography in human adaptation

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rehh 2.0: a reimplementation of the R package rehh to detect positive selection from haplotype structure

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On Detecting Incomplete Soft or Hard Selective Sweeps Using Haplotype Structure

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Human TLRs and IL-1Rs in Host Defense: Natural Insights from Evolutionary, Epidemiological, and Clinical Genetics

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Detecting Signatures of Selection Through Haplotype Differentiation Among Hierarchically Structured Populations

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Adaptations to Climate-Mediated Selective Pressures in Humans

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Adaptive Genetic Variation on the Landscape: Methods and Cases

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Rapid evolutionary response to a transmissible cancer in Tasmanian devils

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Evolutionary Adaptations to Dietary Changes

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Parallel selection on a dormancy gene during domestication of crops from multiple families

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The Neutral Theory of Molecular Evolution in the Genomic Era

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Runs of homozygosity and distribution of functional variants in the cattle genome

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Estimation of population allele frequencies from next‐generation sequencing data: pool‐versus individual‐based genotyping

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Breeding signatures of rice improvement revealed by a genomic variation map from a large germplasm collection

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Evolutionary origins of the obesity epidemic: natural selection of thrifty genes or genetic drift following predation release?

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Selective Sweeps

Stephan, W. (2019) · Genetics · doi:10.1534/genetics.118.301319 · Cited by 207 · see citing works

Spatial patterns of variation due to natural selection in humans

Novembre, J., & Di Rienzo, A. (2009) · Nature Reviews Genetics · doi:10.1038/nrg2632 · Cited by 205 · see citing works

Detection of selection signatures in dairy and beef cattle using high-density genomic information

Zhao, F., McParland, S., Kearney, F. J., Du, L., & Berry, D. P. (2015) · Genetics Selection Evolution · doi:10.1186/s12711-015-0127-3 · Cited by 207 · see citing works

Human pigmentation genes under environmental selection

Sturm, R. A., & Duffy, D. L. (2012) · Genome biology · doi:10.1186/gb-2012-13-9-248 · Cited by 203 · see citing works

Genomic analysis reveals selection for Asian genes in European pigs following human-mediated introgression

Bosse, M., Megens, H., Frantz, L., Madsen, O., Larson, G., Paudel, Y., Duijvesteijn, N., Harlizius, B., Hagemeijer, Y. P., Crooijmans, R. P. M. A., et al. (2014) · Nature Communications · doi:10.1038/ncomms5392 · Cited by 203 · see citing works

Effect of Artificial Selection on Runs of Homozygosity in U.S. Holstein Cattle

Kim, E.-S., Cole, J. B., Huson, H. J., Wiggans, G. R., Tassell, C. P. V., Crooker, B. A., Liu, G. E., Da, Y., & Sonstegard, T. S. (2013) · PLoS ONE · doi:10.1371/journal.pone.0080813 · Cited by 200 · see citing works

Recent natural selection causes adaptive evolution of an avian polygenic trait

Bosse, M., Spurgin, L. G., Laine, V. N., Cole, E. F., Firth, J. A., Gienapp, P., Gosler, A., McMahon, K., Poissant, J., Verhagen, I., et al. (2017) · Science · doi:10.1126/science.aal3298 · Cited by 199 · see citing works

Mapping signatures of positive selection in the genome of livestock

Qanbari, S., & Simianer, H. (2014) · Livestock Science · doi:10.1016/j.livsci.2014.05.003 · Cited by 189 · see citing works

A genomic perspective on HLA evolution

Meyer, D., Aguiar, V. R. C., Bitarello, B. D., Brandt, D. Y. C., & Nunes, K. (2017) · Immunogenetics · doi:10.1007/s00251-017-1017-3 · Cited by 182 · see citing works

Genome-wide analysis reveals population structure and selection in Chinese indigenous sheep breeds

Wei, C., Wang, H., Liu, G., Wu, M., Cao, J., Liu, Z., Liu, R., Zhao, F., Zhang, L., Lu, J., et al. (2015) · BMC Genomics · doi:10.1186/s12864-015-1384-9 · Cited by 185 · see citing works

Selective Sweep at a Quantitative Trait Locus in the Presence of Background Genetic Variation

Chevin, L. (2008) · Genetics · doi:10.1534/genetics.108.093351 · Cited by 179 · see citing works

Large Allele Frequency Differences between Human Continental Groups are more Likely to have Occurred by Drift During range Expansions than by Selection

Hofer, T., Ray, N., Wegmann, D., & Excoffier, L. (2008) · Annals of Human Genetics · doi:10.1111/j.1469-1809.2008.00489.x · Cited by 170 · see citing works

A genome‐wide scan for signatures of recent selection in Holstein cattle

Qanbari, S., Pimentel, E. C. G., Tetens, J., Thaller, G. E., Lichtner, P., Sharifi, A., & Simianer, H. (2010) · Animal Genetics · doi:10.1111/j.1365-2052.2009.02016.x · Cited by 171 · see citing works

Searching for Footprints of Positive Selection in Whole-Genome SNP Data From Nonequilibrium Populations

Pavlidis, P., Jensen, J. D., & Stephan, W. (2010) · Genetics · doi:10.1534/genetics.110.116459 · Cited by 167 · see citing works

Interpreting differentiation landscapes in the light of long-term linked selection

Burri, R. (2017) · Evolution Letters · doi:10.1002/evl3.14 · Cited by 162 · see citing works

Footprints of selection in the ancestral admixture of a New World Creole cattle breed

Gautier, M., & Navès, M. (2011) · Molecular Ecology · doi:10.1111/j.1365-294x.2011.05163.x · Cited by 164 · see citing works

Genetic Variation and Recent Positive Selection in Worldwide Human Populations: Evidence from Nearly 1 Million SNPs

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Fifteen years of genomewide scans for selection: trends, lessons and unaddressed genetic sources of complication

Haasl, R. J., & Payseur, B. A. (2015) · Molecular Ecology · doi:10.1111/mec.13339 · Cited by 157 · see citing works

Gene Regulation in Primates Evolves under Tissue-Specific Selection Pressures

Blekhman, R., Oshlack, A., Chabot, A. E., Smyth, G. K., & Gilad, Y. (2008) · PLoS Genetics · doi:10.1371/journal.pgen.1000271 · Cited by 158 · see citing works

Signatures of positive selection: from selective sweeps at individual loci to subtle allele frequency changes in polygenic adaptation

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Natural Selection Affects Multiple Aspects of Genetic Variation at Putatively Neutral Sites across the Human Genome

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