Multivariable association discovery in population-scale meta-omics studies

Cited by (1,002)

Items 501–600 of 1,002

1. A human milk oligosaccharide alters the microbiome, circulating hormones, and metabolites in a randomized controlled trial of older adults
   Matthew M. Carter, Diane Demis, Dalia Perelman, Michelle St. Onge, Christina Petlura, Kristen May Cunanan, Kavita Mathi, Holden Terry Maecker, JoMay Chow, Jennifer L. Robinson et al. · 2025 · Cell Reports Medicine
2. Challenges, Strategies, and Perspectives for Reference-Independent Longitudinal Multi-Omic Microbiome Studies
   Susana Martínez Arbas, Susheel Bhanu Busi, Pedro Queirós, Laura de Nies, Malte Herold, Patrick May, Paul Wilmes, Emilie E. L. Muller, Shaman Narayanasamy · 2021 · Frontiers in Genetics
3. Taxonomic changes in the gut microbiota are associated with cartilage damage independent of adiposity, high fat diet, and joint injury
   Kelsey H. Collins, Drew J. Schwartz, Kristin L. Lenz, Charles Andrew Harris, Farshid Guilak · 2021 · Scientific Reports
4. Human Milk-Based or Bovine Milk-Based Fortifiers Differentially Impact the Development of the Gut Microbiota of Preterm Infants
   Miriam Aguilar‐López, Christine Wetzel, Alissa MacDonald, Thao T. B. Ho, Sharon Marie Donovan · 2021 · Frontiers in Pediatrics
5. Metagenomic Insights Into the Changes of Antibiotic Resistance and Pathogenicity Factor Pools Upon Thermophilic Composting of Human Excreta
   Katharina A. Werner, Dominik Schneider, Anja Poehlein, Nina Diederich, Lara Feyen, Katharina Axtmann, Tobias Hübner, Nicolas Brüggemann, Katharina Prost, Rolf Daniel et al. · 2022 · Frontiers in Microbiology
6. Different Fecal Microbiota in Hirschsprung's Patients With and Without Associated Enterocolitis
   Alexis Pierre Arnaud, Ianis Cousin, Françoise Schmitt, Thierry Petit, Benoît Parmentier, Guillaume Levard, Guillaume Podevin, Audrey Guinot, Stéphan DeNapoli, Erik Hervieux et al. · 2022 · Frontiers in Microbiology
7. Functional recovery outcomes following acute stroke is associated with abundance of gut microbiota related to inflammation, butyrate and secondary bile acid
   Tyler C. Hammond, Elizabeth Salmon Powell, Stefan J. Green, George Edward Chlipala, Jacqueline A. Frank, Andrew T. Yackzan, Lucille M. Yanckello, Ya‐Hsuan Chang, Xin Xing, Sally D. Heil et al. · 2022 · Frontiers in Rehabilitation Sciences
8. Gut Microbial Genes and Metabolism for Methionine and Branched-Chain Amino Acids in Diabetic Nephropathy
   Ji Eun Kim, Hoonsik Nam, Ji In Park, Hyunjeong Cho, Jangwook Lee, Hyoeun Kim, Dong Ki Kim, Kwon Wook Joo, Dong Ki Kim, Bong Soo Kim et al. · 2023 · Microbiology Spectrum
9. Soil salinity determines the assembly of endophytic bacterial communities in the roots but not leaves of halophytes in a river delta ecosystem
   Yi Zhou, Yanli Wei, Maarten H. Ryder, Hongmei Li, Zhongjuan Zhao, Ruey Toh, Peizhi Yang, Jishun Li, Hetong Yang, Matthew D. Denton · 2023 · Geoderma
10. Spatial distribution and core community of diazotrophs in Biological soil crusts and subsoils in temperate semi-arid and arid deserts of China
    Kai Tang, Yungang Liang, Bo Yuan, Jianyu Meng, Fuying Feng · 2023 · Frontiers in Microbiology
11. Exploring the human gut microbiota targets in relation to the use of contemporary antidepressants
    Shih-Kai Kevin Lin, Hsi‐Chung Chen, Chun-Hsin Chen, I‐Ming Chen, Mong‐Liang Lu, Cheng‐Dien Hsu, Yi-Hang Chiu, Tsung-Yang Wang, Hui‐Mei Chen, Yu-Chu Ella Chung et al. · 2023 · Journal of Affective Disorders
12. Associations between the rumen microbiota and carcass merit and meat quality in beef cattle
    Devin B. Holman, Katherine E. Gzyl, Haley Scott, Cara Service, Nuria Prieto, Ó. López-Campos · 2024 · Applied Microbiology and Biotechnology
13. Crop rotation and fertilization shape the microbiomes of maize rhizosphere soil with distinct mechanisms
    Chi Liu, Jialong Wang, Yaosheng Wang, Lu‐Jun Li, Zhihan Feng, Yuchen Xian, Yanqiong Jiang, Jinfeng Yu, Tingting Tong, Xiangzhen Li et al. · 2024 · Plant and Soil
14. Application of propionate-producing bacterial consortium in ruminal methanogenesis inhibited environment with bromoethanesulfonate as a methanogen direct inhibitor
    Jongsik Jeong, Chaemin Yu, Ryukseok Kang, Myunghoo Kim, Tansol Park · 2024 · Frontiers in Veterinary Science
15. Convergent remodelling of the gut microbiome is associated with host energetic condition over long‐distance migration
    Brian K. Trevelline, Daniel D. Sprockett, William V. DeLuca, Catherine R. Andreadis, Andrew H. Moeller, Christopher M. Tonra · 2023 · Functional Ecology
16. Gut microbiome and resistome characterization of pigs treated with commonly used post-weaning diarrhea treatments
    Judith Guitart-Matas, María Ballester, Lorenzo José Fraile, Laila Darwich, Noemí Giler-Baquerizo, Joaquim Tarres, Sergio Luis González López, Yuliaxis Ramayo‐Caldas, Lourdes Migura‐García · 2024 · Animal Microbiome
17. Enhanced microbiota profiling in patients with quiescent Crohn’s disease through comparison with paired healthy first-degree relatives
    Wanning Chen, Yichen Li, Wenxia Wang, Sheng Gao, Jun X. Hu, Bingjie Xiang, Dingfeng Wu, Na Jiao, Tao Xu, Min Zhi et al. · 2024 · Cell Reports Medicine
18. Metagenomic Analysis Reveals Large‐Scale Disruptions of the Gut Microbiome in Parkinson's Disease
    Avril Metcalfe‐Roach, Mihai S. Cirstea, Adam C. Yu, Hena R. Ramay, Olabisi Oluwabukola Coker, Seti Boroomand, Faezeh Kharazyan, Davide Martino, Laura K. Sycuro, Silke Appel‐Cresswell et al. · 2024 · Movement Disorders
19. The gut microbiome is associated with susceptibility to febrile malaria in Malian children
    Kristin M. Van Den Ham, Layne K. Bower, Shanping Li, Hernán Lorenzi, Safiatou Doumbo, Didier Doumtabé, Kassoum Kayentao, Aïssata Ongoïba, Boubacar Traoré, Peter D. Crompton et al. · 2024 · Nature Communications
20. Further reduction in soil bacterial diversity under severe acidification in European temperate forests
    Mélody Rousseau, Andjin Siegenthaler, Andrew K. Skidmore, Gerard Arjen de Groot, Ivo Laros · 2024 · European Journal of Soil Science
21. A metagenome-assembled genome inventory for children reveals early-life gut bacteriome and virome dynamics
    Ye Peng, Jie Zhu, Shilan Wang, Yingzhi Liu, Xin Liu, Orlando DeLeon, Wenyi Zhu, Zhilu Xu, Xi Zhang, Shilin Zhao et al. · 2024 · Cell Host & Microbe
22. Fecal Microbiota Transplantation ( FMT ) From a Human at Low Risk for Alzheimer's Disease Improves Short‐Term Recognition Memory and Increases Neuroinflammation in a 3xTg AD Mouse Model
    Claire Chevalier, Benjamin B. Tournier, Moira Marizzoni, Rahel Park, Arthur Paquis, Kelly Ceyzériat, Aurélien M. Badina, Aurélien Lathuilière, Samantha Saleri, Floriana De Cillis et al. · 2025 · Genes Brain & Behavior
23. In vitro microbiota model recapitulates and predicts individualised sensitivity to dietary emulsifier
    Rytter, Héloïse, Naimi, Sabrine, Wu, Gary, Lewis, Jim, Duquesnoy, Maeva, Vigué, Lucile, Tenaillon, Olivier, Belda, Eugeni, Vazquez-Gomez, Marta, Touly, Nina et al. · 2025 · Gut
24. The gut microbiome enhances breast cancer immunotherapy following bariatric surgery
    Margaret Sue Bohm, Sydney C. Joseph, Laura M. Sipe, Minjung Kim, Cameron T. Leathem, Tahliyah S. Mims, Nathaniel Willis, Ubaid A. Tanveer, Joel H. Elasy, Emily W. Grey et al. · 2025 · JCI Insight
25. Tissue-resident microbiota impacts colorectal cancer progression and prognosis
    Zhun Shi, Huahui Ren, Cong Lin, Fuqiang Li, Meizhen Wu, Fangming Yang, Tian Luo, Luís Nunes, Anders Isaksson, Klara Hammarström et al. · 2025 · Nature Communications
26. Dynamic Changes in Breast Milk Microbiome in the Early Postpartum Period of Kenyan Women Living with HIV Are Influenced by Antibiotics but Not Antiretrovirals
    Rabia Maqsood, Peter T. Skidmore, LaRinda A. Holland, Joshua L. Au, Adam K. Khan, Lily I. Wu, Ningxin Ma, Emily R. Begnel, Bhavna H. Chohan, Judith Adhiambo et al. · 2022 · Microbiology Spectrum
27. Machine Learning and Canine Chronic Enteropathies: A New Approach to Investigate FMT Effects
    Giada Innocente, Ilaria Patuzzi, Tommaso Furlanello, Barbara Di Camillo, Luca Bargelloni, Maria Cecilia Giron, Sonia Facchin, Edoardo Vincenzo Savarino, Mirko Azzolin, Barbara Simionati · 2022 · Veterinary Sciences
28. Acute Endotoxemia-Induced Respiratory and Intestinal Dysbiosis
    Evy Goossens, Jianhui Li, Chana Callens, Nathalie Van Rysselberghe, Hannele Kettunen, Juhani Vuorenmaa, Natalia García-González, Claude Libert, Richard Ducatelle, Filip Van Immerseel · 2022 · International Journal of Molecular Sciences
29. Longitudinal metatranscriptomic sequencing of Southern California wastewater representing 16 million people from August 2020–21 reveals widespread transcription of antibiotic resistance genes
    Jason A. Rothman, Andrew Saghir, Seung-Ah Chung, Nicholas Boyajian, Thao T. Dinh, Jinwoo Kim, Jordan Oval, Vivek Sharavanan, Courtney York, Amity G. Zimmer-Faust et al. · 2022 · Water Research
30. Multi‐omics integration reveals a core network involved in host defence and hyperkeratinization in psoriasis
    Jingwen Deng, Emmerik F A Leijten, Michel A.M. Olde Nordkamp, Guangjuan Zheng, Juliëtte N. Pouw, Weiyang Tao, Sarita A. Y. Hartgring, Deepak Balak, Rianne Rijken, Runyue Huang et al. · 2022 · Clinical and Translational Medicine
31. Antenatal gut microbiome profiles and effect on pregnancy outcome in HIV infected and HIV uninfected women in a resource limited setting
    Panashe Chandiwana, Privilege Tendai Munjoma, Arthur John Mazhandu, Jiaqi Li, Isabel Baertschi, Jacqueline Wyss, Sebastian Bruno Ulrich Jordi, Lovemore Ronald Mazengera, Bahtiyar Yılmaz, Benjamin Misselwitz et al. · 2023 · BMC Microbiology
32. Association of Vitamin D Level and Maternal Gut Microbiome during Pregnancy: Findings from a Randomized Controlled Trial of Antenatal Vitamin D Supplementation
    Andrea Aparicio, Diane R. Gold, Scott T. Weiss, Augusto A. Litonjua, Kathleen A. Lee‐Sarwar, Yang‐Yu Liu · 2023 · Nutrients
33. The cervical microbiota of Hispanics living in Puerto Rico is nonoptimal regardless of HPV status
    Daniela Vargas-Robles, Josefina Romaguera, Ian Alvarado-Vélez, Eduardo L. Tosado-Rodríguez, Anelisse Dominicci-Maura, María M. Sánchez, Kara J. Wiggin, Jack A. Gilbert, Magaly Martínez‐Ferrer, Larry J. Forney et al. · 2023 · mSystems
34. Microbial and Metabolite Signatures of Stress Reactivity in Ulcerative Colitis Patients in Clinical Remission Predict Clinical Flare Risk
    Jonathan P. Jacobs, Jenny S. Sauk, Aaron Ahdoot, Fengting Liang, William R. Katzka, Hyo Jin Ryu, Ariela Khandadash, Venu Lagishetty, Jennifer S. Labus, Bruce D. Naliboff et al. · 2023 · Inflammatory Bowel Diseases
35. Exploring gut microbiota in adult Atlantic salmon (Salmo salar L.): Associations with gut health and dietary prebiotics
    Jie Wang, Yanxian Li, Alexander Jaramillo-Torres, Olai Einen, Jan Vidar Jakobsen, Åshild Krogdahl, Trond M. Kortner · 2023 · Animal Microbiome
36. The application of multi-omics in the respiratory microbiome: Progresses, challenges and promises
    Jingyuan Gao, Xinzhu Yi, Zhang Wang · 2023 · Computational and Structural Biotechnology Journal
37. Epithelial Dual Oxidase 2 Shapes the Mucosal Microbiome and Contributes to Inflammatory Susceptibility
    Juan Camilo Castrillón-Betancur, Víctor A. López-Agudelo, Nina Sommer, Sven Cleeves, Joana Pimenta Bernardes, Saskia Weber‐Stiehl, Philip C Rosenstiel, Felix Sommer · 2023 · Antioxidants
38. Persistent effects of intramammary ceftiofur treatment on the gut microbiome and antibiotic resistance in dairy cattle
    Karla A. Vasco, Samantha L. Carbonell, Rebekah E. Sloup, Bailey Bowcutt, Rita R. Colwell, Karlis Graubics, Ronald J. Erskine, Bo Norby, P.L. Ruegg, Lixin Zhang et al. · 2023 · Animal Microbiome
39. Combined analysis of cross-population healthy adult human microbiome reveals consistent differences in gut microbial characteristics between Western and non-Western countries
    Yanghao Sheng, Jue Wang, Yongchao Gao, Yilei Peng, Xiong Li, Weihua Huang, Honghao Zhou, Rong Liu, Wei Zhang · 2023 · Computational and Structural Biotechnology Journal
40. Early time-restricted eating improves markers of cardiometabolic health but has no impact on intestinal nutrient absorption in healthy adults
    M. Alan Dawson, Susan N Cheung, Michael R. La Frano, Ravinder Nagpal, Claire E. Berryman · 2024 · Cell Reports Medicine
41. Metabolites: a converging node of host and microbe to explain meta-organism
    Nabarun Chakraborty · 2024 · Frontiers in Microbiology
42. Regulatory functions and mechanisms of human microbiota in infectious diseases
    Yingxu Fang, Zehui Lei, Lingqiang Zhang, Cui Hua Liu, Qiyao Chai · 2024 · hLife
43. Oral microbiota in autistic children: Diagnosis-related differences and associations with clinical characteristics
    Margaux Evenepoel, Nicky Daniëls, Matthijs Moerkerke, Michiel Van de Vliet, Jellina Prinsen, Elise Tuerlinckx, Jean G. Steyaert, Bart Boets, Kaat Alaerts, Marie Joossens · 2024 · Brain Behavior & Immunity - Health
44. Exploratory multi-omics analysis reveals host-microbe interactions associated with disease severity in psoriatic skin
    Ying Yang, Péter Oláh, Zoltán Rádai, Guilherme Augusto Maia, Alexander Salava, Ville Salo, Jonathan Barker, Antti Lauerma, Björn Andersson, Bernhard Homey et al. · 2024 · EBioMedicine
45. The gut mycobiome signatures in long-lived populations
    Lixia Pu, Shifu Pang, Wenjie Mu, Xiaodong Chen, Yang Zou, Yugui Wang, Yingying Ding, Qi Yan, Yu Huang, Xiaochun Chen et al. · 2024 · iScience
46. Effects of iron supplements and iron-containing micronutrient powders on the gut microbiome in Bangladeshi infants: a randomized controlled trial
    Andrew Baldi, Sabine Braat, Mohammed Imrul Hasan, Cavan Bennett, Marilou H. Barrios, Naomi Jones, Imadh Abdul Azeez, Stephen Wilcox, Pradip Kumar Roy, Mohammad Saiful Alam Bhuiyan et al. · 2024 · Nature Communications
47. MicrobiomeStatPlots: Microbiome statistics plotting gallery for meta‐omics and bioinformatics
    Defeng Bai, Chuang Ma, Jiani Xun, Hao Luo, Haifei Yang, Hujie Lyu, Zhihao Zhu, Anran Gai, Salsabeel Yousuf, Kai Peng et al. · 2025 · iMeta
48. Bariatric-induced microbiome changes alter MASLD development in association with changes in the innate immune system
    Simer Shera, William R. Katzka, Julianne Ching Yang, Candace Chang, Nerea Arias-Jayo, Venu Lagishetty, Anna Balioukova, Yijun Chen, Erik Dutson, Zhaoping Li et al. · 2024 · Frontiers in Microbiology
49. Integrated analysis of microbiome and metabolome reveals signatures in PDAC tumorigenesis and prognosis
    Yuan Fang, Xiaohong Liu, Jie Ren, Xing Wang, Feihan Zhou, Shi Wei Huang, Lei You, Yupei Zhao · 2024 · Microbiology Spectrum
50. Large-scale biosynthetic analysis of human microbiomes reveals diverse protective ribosomal peptides
    Jian Zhang, Dengwei Zhang, Yi Xu, Junliang Zhang, Runze Liu, Ying Gao, Yuqi Shi, Peiyan Cai, Zheng Zhong, Bei‐Bei He et al. · 2025 · Nature Communications
51. Human milk IgA promotes normal immune development by limiting Th17-inducing Erysipelatoclostridium ramosum in the infant gut
    Katherine Donald, Antonio Serapio-Palacios, Tahereh Bozorgmehr, Mandi Ma, Ma Andrea Isabelle Garcia, Charisse Petersen, Piush J. Mandhane, Padmaja Subbarao, Theo J. Moraes, Elinor Simons et al. · 2025 · Proceedings of the National Academy of Sciences
52. Model cyanobacterial consortia reveal a consistent core microbiome independent of inoculation source or cyanobacterial host species
    Andreja Kust, Jackie Zorz, Catalina Cruañas Paniker, Keith Bouma‐Gregson, Netravathi Krishnappa, Wendy Liu, Jillian F. Banfield, Spencer Diamond · 2025 · The ISME Journal
53. Gut microbiota distinguishes aging hispanics with Alzheimer’s disease: associations with cognitive impairment and severity
    Vanessa Sepúlveda‐Rivera, Gerianne Olivieri‐Henry, Hiram Morales, Javier A. Ruiz‐Adames, Carlos Alberto Herrero‐Rivera, Alexandra Rentas-Echeverria, Valerie Cardona-Berdecía, Cecilia Michelle Soler‐Llompart, Ana Cecilia Sala‐Morales, Guillermo Pérez-Montero et al. · 2025 · Scientific Reports
54. Skin metatranscriptomics reveals a landscape of variation in microbial activity and gene expression across the human body
    Chia, Minghao, Ng, Amanda Hui Qi, Ravikrishnan, Aarthi, Mohamed Naim, Ahmad Nazri, Wearne, Stephen, Common, John, Nagarajan, Niranjan · 2026 · Nature Biotechnology
55. Air pollution from livestock farms and the oropharyngeal microbiome of COPD patients and controls
    Warner van Kersen, Alex Bossers, Wouter A. A. de Steenhuijsen Piters, Myrna M.T. de Rooij, Marc J. M. Bonten, Ad C. Fluit, Dick J. J. Heederik, Fernanda L. Paganelli, Malbert R. C. Rogers, Marco C. Viveen et al. · 2022 · Environment International
56. Zebra: Static and Dynamic Genome Cover Thresholds with Overlapping References
    Daniel Hakim, Stephen Wandro, Karsten Zengler, Livia Soares Zaramela, Brent Nowinski, Austin D.-E. Swafford, Qiyun Zhu, Se Jin Song, Antonio Gonzalez, Daniel T. McDonald et al. · 2022 · mSystems
57. Fecal and Tissue Microbiota Are Associated with Tumor T-Cell Infiltration and Mesenteric Lymph Node Involvement in Colorectal Cancer
    Kayti Luu, Jason Y. Ye, Venu Lagishetty, Fengting Liang, Megan C. Hauer, Farzaneh Sedighian, Mary R. Kwaan, Kevork K. Kazanjian, Joel Randolph Hecht, Anne Lin et al. · 2023 · Nutrients
58. Exploring the microbiome of oral epithelial dysplasia as a predictor of malignant progression
    Robyn Wright, Michelle E. Pewarchuk, Erin A. Marshall, Benjamin Murrary, Miriam P. Rosin, Denise M. Laronde, Lewei Zhang, Wan L. Lam, Morgan G. I. Langille, Leigha D. Rock · 2023 · BMC Oral Health
59. Integrative Metatranscriptomic Analysis Reveals Disease-specific Microbiome–host Interactions in Oral Squamous Cell Carcinoma
    Vinay Kumar Jain, Divyashri Baraniya, Doaa E. El-Hadedy, Tsute Chen, Michael J. Slifker, Fadhl Alakwaa, Kathy Qi Cai, Kumaraswamy Naidu Chitrala, Christopher Fundakowski, Nezar Noor Al-Hebshi · 2023 · Cancer Research Communications
60. Oral and anal microbiome from HIV-exposed individuals: role of host-associated factors in taxa composition and metabolic pathways
    Ezequiel Lacunza, Valeria I Fink, María Eugenia Salas, Romina Canzoneri, Julián Naipauer, Siôn Llewelyn Williams, Omar A. Coso, Omar Gustavo Sued, Pedro Enrique Cahn, Enrique A. Mesri et al. · 2023 · npj Biofilms and Microbiomes
61. The gut microbiome and resistome of conventionally vs. pasture-raised pigs
    Devin B. Holman, Katherine E. Gzyl, Arun Kommadath · 2023 · Microbial Genomics
62. Babies, bugs and brains: How the early microbiome associates with infant brain and behavior development
    Sebastian Hunter, Erica Flaten, Charisse Petersen, Judit Gervain, Janet F. Werker, Laurel J. Trainor, B. Brett Finlay · 2023 · PLoS ONE
63. A comparison of the infant gut microbiome before versus after the start of the covid-19 pandemic
    Francesca R. Querdasi, Sarah C. Vogel, Moriah E. Thomason, Bridget L. Callaghan, Natalie H. Brito · 2023 · Scientific Reports
64. Depicting the landscape of gut microbial-metabolic interaction and microbial-host immune heterogeneity in deficient and proficient DNA mismatch repair colorectal cancers
    Jinming Li, Yangyang Guo, Jianqiang Liu, Fanying Guo, Lutao Du, Yongzhi Peter Yang, Xinxiang Li, Yanlei Ma · 2023 · Journal for ImmunoTherapy of Cancer
65. Metal transporter SLC39A14/ZIP14 modulates regulation between the gut microbiome and host metabolism
    Samuel Blake Mitchell, Trista Lee Thorn, Min-Ting Lee, Yongeun Kim, Janine M. C. Comrie, Zi Shang Bai, Elizabeth L. Johnson, Tolunay Beker Aydemir · 2023 · American Journal of Physiology-Gastrointestinal and Liver Physiology
66. Temperate tree microbiomes: divergent soil and phyllosphere microbial communities share few but dominant taxa
    Andjin Siegenthaler, Andrew K. Skidmore, Gerard Arjen de Groot, Ivo Laros, Mélody Rousseau, Yiwei Duan · 2023 · Plant and Soil
67. The bladder microbiota is not significantly altered by intravesical BCG therapy
    Vitor Heidrich, Antonio C. H. Mariotti, Lilian T. Inoue, Elisangela Monteiro Coser, Ernande Xavier dos Santos, Hugo dos Santos, Paula Fontes Asprino, Fabiana Bettoni, Guilherme A.P. Costa, Diogo Assed Bastos et al. · 2023 · Urologic Oncology Seminars and Original Investigations
68. Survey of the infant male urobiome and genomic analysis of Actinotignum spp.
    Seth A. Reasoner, Viktor X. Flores, Gerald Van Horn, Grace H Morales, Leslie Peard, Benjamin N. Abelson, Carmila Manuel, Jessica Lee, Bailey Baker, Timothy Williams et al. · 2023 · npj Biofilms and Microbiomes
69. Structural changes in the gut virome of patients with atherosclerotic cardiovascular disease
    Youshan Li, Jie Ma, Jinxin Meng, Shenghui Li, Yan Zhang, Wei You, Xulin Sai, Jianfeng Yang, Shuo Zhang, Wen Sun · 2023 · Microbiology Spectrum
70. The keystone gut species Christensenella minuta boosts gut microbial biomass and voluntary physical activity in mice
    Tanja Akbuğa-Schön, Taichi A. Suzuki, Dennis Jakob, Dai Long Vu, Jillian L. Waters, Ruth E. Ley · 2023 · mBio
71. Lack of gut microbiome recovery with spinal cord injury rehabilitation
    Ayelet Gur Arie, Itamar Toren, Rotem Hadar, Tzipi Braun, Gilat Efroni, Efrat G. Saar, Zecharia Madar, Amnon Amir, Gabriel Zeilig, Yael Haberman · 2024 · Gut Microbes
72. The potential of enhanced phytoremediation to clean up multi-contaminated soil – insights from metatranscriptomics
    Magdalena Pacwa-Płociniczak, Agata Kumor, Marta Bukowczan, Aki Sinkkonen, Marja I. Roslund, Tomasz Płociniczak · 2024 · Microbiological Research
73. Characterization of tongue coating microbiome from patients with colorectal cancer
    Qubo Chen, Xiaoting Huang, Haiyan Zhang, Xuanting Jiang, Xuan Zeng, Wanhua Li, Hairong Su, Ying Chen, Fengye Lin, Man Li et al. · 2024 · Journal of Oral Microbiology
74. Tracing the origin and authenticity of Spanish PDO honey using metagenomics and machine learning
    Carlos Sabater, Inés Calvete‐Torre, Xenia Vázquez, Lorena Ruíz, Abelardo Margollés · 2024 · International Journal of Food Microbiology
75. Gut microbiome encoded purine and amino acid pathways present prospective biomarkers for predicting metformin therapy efficacy in newly diagnosed T2D patients
    Ilze Elbere, Zigmunds Orlovskis, Laura Ansone, Ivars Silamiķelis, Lauma Jagare, Līga Birzniece, Kaspars Megnis, Kristaps Leškovskis, Annija Vaska, Māris Turks et al. · 2024 · Gut Microbes
76. Lupus and inflammatory bowel disease share a common set of microbiome features distinct from other autoimmune disorders
    Hao Zhou, Diana Balint, Qiaojuan Shi, Tim Vartanian, Martin Alexander Kriegel, Ilana Brito · 2024 · Annals of the Rheumatic Diseases
77. Metabolic and lifestyle factors accelerate disease onset and alter gut microbiome in inflammatory non-communicable diseases
    Nathalie Rohmann, Theresa Geese, Samantha Nestel, Kristina Schlicht, Corinna Geisler, Kathrin Türk, Fynn Brix, Julia Jensen‐Kroll, Tobias J. Demetrowitsch, Corinna Bang et al. · 2024 · BMC Medicine
78. Microbial dynamics and pulmonary immune responses in COVID-19 secondary bacterial pneumonia
    Natasha Spottiswoode, Alexandra Tsitsiklis, Victoria T. Chu, Hoang Van Phan, Catherine DeVoe, Christina Love, Rajani Ghale, Joshua Daniel Bloomstein, Beth Shoshana Zha, Cole P. Maguire et al. · 2024 · Nature Communications
79. Characterizing the Effects of Calcium and Prebiotic Fiber on Human Gut Microbiota Composition and Function Using a Randomized Crossover Design—A Feasibility Study
    Lara S. Yoon, Karin B. Michels · 2021 · Nutrients
80. Effects of a diverse prebiotic fibre blend on inflammation, the gut microbiota and affective symptoms in metabolic syndrome: a pilot open-label randomised controlled trial
    Caitlin Victoria Hall, Piril Hepsomali, Boushra Dalile, Léonardo Scapozza, Thomas Gurry · 2024 · British Journal Of Nutrition
81. Scalable log-ratio lasso regression for enhanced microbial feature selection with FLORAL
    Teng Fei, Tyler Funnell, Nicholas R. Waters, Sandeep S. Raj, Mirae Baichoo, Keimya D. Sadeghi, Anqi Dai, Oriana Miltiadous, Roni Shouval, Meng Lv et al. · 2024 · Cell Reports Methods
82. One Year of Gluten-Free Diet Impacts Gut Function and Microbiome in Celiac Disease
    Carolyn M. Costigan, Frederick J. Warren, Anthony Duncan, Caroline Louise Hoad, Nina Ruth Lewis, Trevor Hill, Colin John Crooks, Paul S. Morgan, Carolina Ciacci, Paola Iovino et al. · 2024 · Clinical Gastroenterology and Hepatology
83. Mixture Effects of Polystyrene Microplastics on the Gut Microbiota in C57BL/6 Mice
    Bei Gao, Xiaochun Shi, Meng Zhao, Fangfang Ren, Weichen Xu, Nan Gao, Jinjun Shan, Weishou Shen · 2025 · ACS Omega
84. Microbiome composition and metabolic pathways in shallow and deep periodontal pockets
    Jale Moradi, Ellen Berggreen, Dagmar Fosså Bunæs, Anne Isine Bolstad, Randi Jacobsen Bertelsen · 2025 · Scientific Reports
85. Ecological factors that drive microbial communities in culturally diverse fermented foods
    Arya Gautam, Rahgavi Poopalarajah, Anique R. Ahmad, Bimarsh Rana, Tsedenia W Denekew, Nakyeong Anh, Lina Utenova, Yadu S Kunwor, Nitin N Bhandari, Aashish R. Jha · 2025 · BMC Microbiology
86. Fecal microbiota transplantation combined with anti-PD-1 therapy in refractory microsatellite-stable gastric cancer: a phase I feasibility and safety study
    Yifan Zhang, Xiaomin Xu, Shulin Wang, Xiaochen Yin, Bohan Zhang, Zhengnong Zhu, Rujie Ji, Jing Zhu, Hermione He, Siyuan Cheng et al. · 2026 · Journal for ImmunoTherapy of Cancer
87. The effect of a hydrolyzed protein diet on the fecal microbiota in cats with chronic enteropathy
    Aarti Kathrani, Sandi Yen, Jonathan Richard Swann, Edward J. Hall · 2022 · Scientific Reports
88. Similar Carcass Surface Microbiota Observed Following Primary Processing of Different Pig Batches
    Charlotte Braley, Philippe Fravalo, Marie‐Lou Gaucher, Guillaume Larivière-Gauthier, Fanie Shedleur-Bourguignon, Jessie Longpré, Alexandre Thibodeau · 2022 · Frontiers in Microbiology
89. Pubertal consumption of R. badensis subspecies acadiensis modulates LPS-induced immune responses and gut microbiome dysbiosis in a sex-specific manner
    Nour Yahfoufi, Anthony K. Kadamani, Sarah Aly, Sara Al Sharani, Jacky Liang, James Butcher, Alain Stintzi, Chantal Matar, Nafissa Ismail · 2022 · Brain Behavior and Immunity
90. Insights on the bacterial composition of Parmigiano Reggiano Natural Whey Starter by a culture-dependent and 16S rRNA metabarcoding portrait
    Laura Solà, Emanuele Quadu, Elena Bortolazzo, Loris Bertoldi, Cinzia Lucia Randazzo, Valentina Pizzamiglio, Lisa Solieri · 2022 · Scientific Reports
91. Differential effects of Akkermansia-enriched fecal microbiota transplant on energy balance in female mice on high-fat diet
    Kalpana D. Acharya, Randall H. Friedline, Doyle V. Ward, Madeline E. Graham, LAUREN A. TAUER, Doris Zheng, Xiaodi Hu, Willem M. de Vos, Beth A. McCormick, Jason K. Kim et al. · 2022 · Frontiers in Endocrinology
92. Microbial vitamin production mediates dietary effects on diabetic risk
    Daoming Wang, Van Thanh Pham, Robert E. Steinert, Alexandra Zhernakova, Jingyuan Fu · 2022 · Gut Microbes
93. Mixed Nuts as Healthy Snacks: Effect on Tryptophan Metabolism and Cardiovascular Risk Factors
    Jieping Yang, Ru‐Po Lee, Zachary Schulz, Albert L. Hsu, Jonathan Pai, Scarlet Yang, Susanne M. Henning, Jianjun Huang, Jonathan P. Jacobs, David Heber et al. · 2023 · Nutrients
94. A comprehensive microbial analysis of pediatric patients with acute appendicitis
    Tsubasa Aiyoshi, Tomo Kakihara, Eiichiro Watanabe, N Tanaka, Yusuke Ogata, Hiroaki Masuoka, Rina Kurokawa, Jun Fujishiro, Kouji Masumoto, Wataru Suda · 2023 · Journal of Microbiology Immunology and Infection
95. Dynamics of oral microbiome acquisition in healthy infants: A pilot study
    Yihong Li, Prakaimuk Saraithong, Lanxin Zhang, Ashley Dills, Bruce J. Paster, Jin Xiao, Tong Tong Wu, Zachary M. Jones · 2023 · Frontiers in Oral Health
96. Enhanced meat chicken productivity in response to the probiotic Bacillus amyloliquefaciens H57 is associated with the enrichment of microbial amino acid and vitamin biosynthesis pathways
    Yadav Sharma Bajagai, Yun Kit Yeoh, Xiuhua Li, Dagong Zhang, Paul G. Dennis, D. Ouwerkerk, Peter J. Dart, Athol V. Klieve, W. L. Bryden · 2023 · Journal of Applied Microbiology
97. Role of Gut Microbiota in Statin-Associated New-Onset Diabetes—A Cross-Sectional and Prospective Analysis of the FINRISK 2002 Cohort
    Kari Koponen, Oleg Kambur, Bijoy Joseph, Matti O. Ruuskanen, Pekka Jousilahti, Rodolfo A. Salido, Caitriona Brennan, Mohit Jain, Guillaume Méric, Michael Inouye et al. · 2023 · Arteriosclerosis Thrombosis and Vascular Biology
98. Bugs as features (part 2): a perspective on enriching microbiome–gut–brain axis analyses
    Thomaz F. S. Bastiaanssen, Thomas P. Quinn, Amy Loughman · 2023 · Nature Mental Health
99. Subchronic inhalation exposure to ultrafine particulate matter alters the intestinal microbiome in various mouse models
    Candace Chang, Rajat Gupta, Farzaneh Sedighian, Allen Louie, David H. Gonzalez, Collin Le, Jae Min Cho, Seulki Park, Jocelyn A. Castellanos, To-Wei Ting et al. · 2024 · Environmental Research
100. Differences in the gut microbiome of young adults with schizophrenia spectrum disorder: using machine learning to distinguish cases from controls
     Miranda Stiernborg, Stefanie Prast‐Nielsen, Philippe A. Melas, Maria Skott, Vincent Millischer, Fredrik Boulund, Yvonne Forsell, Catharina Lavebratt · 2024 · Brain Behavior and Immunity