Multivariable association discovery in population-scale meta-omics studies

Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing

Benjamini, Y., & Hochberg, Y. (1995) · Journal of the Royal Statistical Society Series B: Statistical Methodology · doi:10.1111/j.2517-6161.1995.tb02031.x · Cited by 109,482

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

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Fitting Linear Mixed-Effects Models Using lme4

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<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data

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limma powers differential expression analyses for RNA-sequencing and microarray studies

Ritchie, M. E., Phipson, B., Wu, D., Hu, Y., Law, C. W., Shi, W., & Smyth, G. K. (2015) · Nucleic Acids Research · doi:10.1093/nar/gkv007 · Cited by 40,458

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

McMurdie, P. J., & Holmes, S. (2013) · PLoS ONE · doi:10.1371/journal.pone.0061217 · Cited by 21,942

Differential expression analysis for sequence count data

Anders, S., & Huber, W. (2010) · Genome Biology · doi:10.1186/gb-2010-11-10-r106 · Cited by 15,581

Data Analysis

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Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments

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Complex heatmaps reveal patterns and correlations in multidimensional genomic data

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Influence of feeding black soldier fly (Hermetia illucens), cricket (Gryllodes sigillatus), and superworm (Zophobas morio) on the gut microbiota of rainbow trout (Oncorhynchus mykiss)

Drosdowech, S. M., Bezner, S., Daisley, B. A., Chiasson, M. A., Easton, A. A., Rooney, N., & Huyben, D. C. (2024) · Journal of Applied Microbiology · doi:10.1093/jambio/lxae295 · Cited by 14

Regular Consumption of Black Tea Kombucha Modulates the Gut Microbiota in Individuals with and without Obesity

Costa, M. A. D. C., Duarte, V. D. S., Fraiz, G. M., Cardoso, R. R., da Silva, A., Martino, H. S. D., D’Almeida, C. T. D. S., Ferreira, M. S. L., Corich, V., Hamaker, B. R., et al. (2024) · Journal of Nutrition · doi:10.1016/j.tjnut.2024.12.013 · Cited by 17

Nasal microbiome in relation to olfactory dysfunction and cognitive decline in older adults

Song, H., Zou, J., Sun, Z., Pu, Y., Qi, W., Sun, L., Li, Q., Yuan, C., Wang, X., Gao, X., et al. (2025) · Translational Psychiatry · doi:10.1038/s41398-025-03346-y · Cited by 15

Deterministic succession patterns in the rumen and fecal microbiome associate with host metabolic shifts in peripartum dairy cattle

Wang, S., Kong, F., Dai, D., Li, C., Hao, Y., Wang, E., Cao, Z., Wang, Y., Wang, W., & Li, S. (2025) · GigaScience · doi:10.1093/gigascience/giaf042 · Cited by 14

Fecal Methylmercury Correlates With Gut Microbiota Taxa in Pacific Walruses (Odobenus rosmarus divergens)

Rothenberg, S. E., Sweitzer, D., Rackerby, B., Couch, C. E., Cohen, L., Broughton, H. M., Steingass, S. M., & Beechler, B. R. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.648685 · Cited by 14

Vitamin D Supplementation in Exclusively Breastfed Infants Is Associated with Alterations in the Fecal Microbiome

Ma, T., Bu, S., Paneth, N., Kerver, J. M., & Comstock, S. S. (2022) · Nutrients · doi:10.3390/nu14010202 · Cited by 14

Mitigation of gastrointestinal graft-versus-host disease with tocilizumab prophylaxis is accompanied by preservation of microbial diversity and attenuation of enterococcal domination

Chhabra, S., Szabó, A., Clurman, A. G., McShane, K., Waters, N. R., Eastwood, D. C., Samanas, L., Fei, T., Armijo, G. K., Abedin, S., et al. (2022) · Haematologica · doi:10.3324/haematol.2022.281309 · Cited by 14

Comparative Gut Microbiome Differences between High and Low Aortic Arch Calcification Score in Patients with Chronic Diseases

Liu, Y., Peng, P., Hung, W., Wu, P., Kao, C., Wu, P.-Y., Huang, J., Hung, C., Su, H., Chen, S., et al. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24065673 · Cited by 14

Fungal and Bacterial Microbiome in Sinus Mucosa of Patients with and without Chronic Rhinosinusitis

Lee, J. T., Simpson, C. A., Yang, H., Suh, J. D., Wang, M. B., Lagishetty, V., Liang, F., & Jacobs, J. P. (2023) · The Laryngoscope · doi:10.1002/lary.30941 · Cited by 14

Carbohydrate quality, fecal microbiota and cardiometabolic health in older adults: a cohort study

Atzeni, A., Nishi, S. K., Babió, N., Belzer, C., Konstanti, P., Vioqué, J., Corella, D., Castañer, O., Vidal, J., Moreno‐Indias, I., et al. (2023) · Gut Microbes · doi:10.1080/19490976.2023.2246185 · Cited by 14

Integrated microbiota–host–metabolome approaches reveal adaptive ruminal changes to prolonged high-grain feeding and phytogenic supplementation in cattle

Ricci, S., Pacífico, C., Kreuzer-Redmer, S., Castillo‐Lopez, E., Rivera‐Chacon, R., Sener-Aydemir, A., Rossi, G., Galosi, L., Biagini, L., Schwartz, H., et al. (2024) · FEMS Microbiology Ecology · doi:10.1093/femsec/fiae006 · Cited by 14

The vaginal microbiome of transgender men receiving gender-affirming hormonal therapy in comparison to that of cisgender women

Feil, K., Pabst, L., Reider, S., Schuchter, S., Ciresa-König, A., & Tóth, B. (2024) · Scientific Reports · doi:10.1038/s41598-024-72365-4 · Cited by 13

Longitudinal effects of elexacaftor/tezacaftor/ivacaftor on the oropharyngeal metagenome in adolescents with cystic fibrosis

Steinberg, R., Mœller, A., Gisler, A., Kryuchkova-Mostacci, N., Hilty, M., & Usemann, J. (2024) · Journal of Cystic Fibrosis · doi:10.1016/j.jcf.2024.10.001 · Cited by 13

Correlation between intestinal microbiota and urolithin metabolism in a human walnut dietary intervention

Liu, H., Birk, J. W., Provatas, A. A., Vaziri, H., Fan, N., Rosenberg, D. W., Gharaibeh, R. Z., & Jobin, C. (2024) · BMC Microbiology · doi:10.1186/s12866-024-03626-5 · Cited by 13

Response of the gut microbiome and metabolome to dietary fiber in healthy dogs

Bhosle, A., Jackson, M. I., Walsh, A. M., Franzosa, E. A., Badri, D. V., & Huttenhower, C. (2024) · mSystems · doi:10.1128/msystems.00452-24 · Cited by 14

Rumen microbiota associated with feed efficiency in beef cattle are highly influenced by diet composition

Ortiz‐Chura, A., Corral‐Jara, K. F., Tournayre, J., Cantalapiedra-Hijar, G., Popova, M., & Morgavi, D. (2025) · Animal nutrition · doi:10.1016/j.aninu.2024.11.027 · Cited by 18

Protocol for microbial profiling of low-biomass upper respiratory tract samples

Odendaal, M.-L., Chu, M. L. J. N., Arp, K., van Beveren, G. J., Biesbroek, G., Binkowska, J. M., Bosch, T., Groot, J. A., Hasrat, R., Kuiling, S., et al. (2025) · STAR Protocols · doi:10.1016/j.xpro.2025.103740 · Cited by 13

Metabotypes are linked to uncontrolled childhood asthma, gut microbiota, and systemic inflammation

Abdel‐Aziz, M. I., Hashimoto, S., Neerincx, A. H., Haarman, E. G., Cecil, A., Lintelmann, J., Witting, M. A., Hauck, S. M., Kerssemakers, N., Verster, J. C., et al. (2025) · Journal of Allergy and Clinical Immunology · doi:10.1016/j.jaci.2025.04.017 · Cited by 13

Polyphenol rewiring of the microbiome reduces methane emissions

McGivern, B. B., Ellenbogen, J., Hoyt, D. W., Bouranis, J. A., Stemple, B., Daly, R. A., Bosman, S. H., Sullivan, M. B., Hagerman, A. E., Chanton, J. P., et al. (2025) · The ISME Journal · doi:10.1093/ismejo/wraf108 · Cited by 13

Segatella copri and gut microbial ammonia metabolism contribute to chronic kidney disease pathogenesis

Lin, S., Sun, Z., Zhu, X., Wang, M., Zhang, Q., Qian, J., Zhang, H., Mei, Z., Pu, Y., Kong, M., et al. (2025) · Nature Microbiology · doi:10.1038/s41564-025-02039-y · Cited by 13

Maternal emulsifier consumption alters the offspring early-life microbiota and goblet cell function leading to long-lasting diseases susceptibility

Delaroque, C., Rytter, H., Bonazzi, E., Huillet, M., Ellero‐Simatos, S., Chatonnat, E., Hao, F., Patterson, A. D., & Chassaing, B. (2025) · Nature Communications · doi:10.1038/s41467-025-62397-3 · Cited by 16

Microbiome Shifts in Peri-Implantitis: Longitudinal Characterization of Dysbiosis and Resolution

Anuntakarun, S., Thaweesapphithak, S., Krasaesin, A., Prommanee, S., Arunyanak, S. P., Kungsadalpipob, K., Acharya, A., Porntaveetus, T., & Mattheos, N. (2025) · International Dental Journal · doi:10.1016/j.identj.2025.100951 · Cited by 13

Systematically investigating and identifying bacteriocins in the human gut microbiome

Zhang, D., Zou, Y., Shi, Y., Zhang, J., Liu, J., Wu, G., Zhang, J., Gao, Y., Chen, M., & Li, Y. (2025) · Cell Genomics · doi:10.1016/j.xgen.2025.100983 · Cited by 17

Gut microbiome-based machine learning model for early colorectal cancer and adenoma screening

Tsai, Y.-J., Lyu, W.-N., Liao, N.-S., Chen, P., Tsai, M., & Chuang, E. Y.-Y. (2025) · Gut Pathogens · doi:10.1186/s13099-025-00750-z · Cited by 16

Evolution of gut microbiota across honeybee species revealed by comparative metagenomics

Prasad, A., Pallujam, A. D., Siddaganga, R., Suryanarayanan, A., Mazel, F., Brockmann, A., Yek, S. H., & Engel, P. (2025) · Nature Communications · doi:10.1038/s41467-025-64115-5 · Cited by 21

Intercontinental Gut Microbiome Variances in IBD

Mayorga, L., Serrano-Gómez, G., Xie, Z., Borruel, N., & Manichanh, C. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms231810868 · Cited by 14

Precursor-derived in-water peracetic acid impacts on broiler performance, gut microbiota, and antimicrobial resistance genes

Galgano, S., Conway, L., Maggio, F. D., Farthing, K., Dalby, N., Fellows, A., & Houdijk, J. G. M. (2022) · Poultry Science · doi:10.1016/j.psj.2022.102368 · Cited by 13

Characterization of the gut microbiome and resistome of Galapagos marine iguanas (Amblyrhynchus cristatus) from uninhabited islands

Vasco, K. A., Guevara, N., Mosquera, J. M., Zapata, S., & Zhang, L. (2022) · Animal Microbiome · doi:10.1186/s42523-022-00218-4 · Cited by 15

Microbiome Alterations Driven by Trypanosoma cruzi Infection in Two Disjunctive Murine Models

Castañeda, S., Muñoz, M., Hotez, P. J., Bottazzi, M. E., Paniz‐Mondolfi, A., Jones, K. M., Mejía, R., Poveda, C., & Ramírez, J. D. (2023) · Microbiology Spectrum · doi:10.1128/spectrum.00199-23 · Cited by 13

Gut microbial dysbiosis in patients with Cushing’s disease in long-term remission. Relationship with cardiometabolic risk

Valassi, E., Manichanh, C., Amodru, V., Fernández, P. G., Gaztambide, S., Yáñez, F., Martel‐Duguech, L., Puig‐Domingo, M., & Webb, S. M. (2023) · Frontiers in Endocrinology · doi:10.3389/fendo.2023.1074757 · Cited by 13

Oral and Gut Microbiota Dysbiosis is Associated with Mucositis Severity in Autologous Hematopoietic Stem Cell Transplantation: Evidence from an Asian Population

Wong, S. P., Er, Y. X., Tan, S. M., Lee, S. C., Rajasuriar, R., & Lim, Y. A. L. (2023) · Transplantation and Cellular Therapy · doi:10.1016/j.jtct.2023.06.016 · Cited by 13

Skin-Microbiome Assembly in Preterm Infants during the First Three Weeks of Life and Impact of Topical Coconut Oil Application

Ghori, N.-U.-H., Mullally, C. A., Nicol, M. P., Currie, A. J., Hibbert, J., Payne, M. S., Patole, S., & Strunk, T. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms242316626 · Cited by 15

Cultivable Gut Microbiota in Synanthropic Bats: Shifts of Its Composition and Diversity Associated with Hibernation

Popov, I. V., Berezinskaya, I. S., Popov, I. V., Martyusheva, I. B., Tkacheva, E. V., Gorobets, V. E., Tikhmeneva, I. A., Aleshukina, A. V., Tverdokhlebova, T. I., Chikindas, M. L., et al. (2023) · Animals · doi:10.3390/ani13233658 · Cited by 13

Distinct Microbial Taxa Are Associated with LDL-Cholesterol Reduction after 12 Weeks of Lactobacillus plantarum Intake in Mild Hypercholesterolemia: Results of a Randomized Controlled Study

Kerlikowsky, F., Müller, M., Greupner, T., Amend, L., Strowig, T., & Hahn, A. (2023) · Probiotics and Antimicrobial Proteins · doi:10.1007/s12602-023-10191-2 · Cited by 18

Precocious infant fecal microbiome promotes enterocyte barrier dysfuction, altered neuroendocrine signaling and associates with increased childhood obesity risk

Yong, G. J. M., Porsche, C. E., Sitarik, A. R., Fujimura, K. E., McCauley, K. E., Nguyen, D., Levin, A. M., Woodcroft, K. J., Ownby, D. R., Rundle, A., et al. (2023) · Gut Microbes · doi:10.1080/19490976.2023.2290661 · Cited by 14

Exploring Metabolic and Gut Microbiome Responses to Paraquat Administration in Male Wistar Rats: Implications for Oxidative Stress

Hernández-Baixauli, J., Chomiciute, G., Tracey, H., Mora, I., Cortés-Espinar, A. J., Ávila‐Román, J., Abasolo-Zabalo, N., Palacios-Jordan, H., Foguet‐Romero, E., Suñol, D., et al. (2024) · Antioxidants · doi:10.3390/antiox13010067 · Cited by 16

Effects of Gluten on Gut Microbiota in Patients with Gastrointestinal Disorders, Migraine, and Dermatitis

Martín, I. S. M., Oliva, S. L., Vilar, E. G., Niño, G. M. S., Penadés, B. F., Lora, A. T., Rojo, S. S., & Yurrita, L. C. (2024) · Nutrients · doi:10.3390/nu16081228 · Cited by 13

The effect of dental material type and masticatory forces on periodontitis-derived subgingival microbiomes

Montoya, C., Baraniya, D., Chen, T., Al-Hebshi, N. N., & Orrego, S. (2024) · Biofilm · doi:10.1016/j.bioflm.2024.100199 · Cited by 13

Gut microbiota associations with chronic kidney disease: insights into nutritional and inflammatory parameters

Lazarević, V., Teta, D., Pruijm, M. T., Stoermann, C., Marangon, N., Mareschal, J., Solano, R., Wurzner-Ghajarzadeh, A., Gaïa, N., Cani, P. D., et al. (2024) · Frontiers in Microbiology · doi:10.3389/fmicb.2024.1298432 · Cited by 14

A strategy for differential abundance analysis of sparse microbiome data with group-wise structured zeros

Abegaz, F., Abedini, D., White, F. T. G., Guerrieri, A., Zancarini, A., Dong, L., Westerhuis, J. A., van Eeuwijk, F. A., Bouwmeester, H. J., & Smilde, A. K. (2024) · Scientific Reports · doi:10.1038/s41598-024-62437-w · Cited by 14

Gut microbial diversity and functional characterization in people with alcohol use disorder: A case-control study

Piacentino, D., Vizioli, C., Barb, J. J., Grant-Beurmann, S., Bouhlal, S., Battista, J. T., Jennings, O., Lee, M. R., Schwandt, M. L., Walter, P. J., et al. (2024) · PLoS ONE · doi:10.1371/journal.pone.0302195 · Cited by 13

Faecal microbiota of schoolchildren is associated with nutritional status and markers of inflammation: a double-blinded cluster-randomized controlled trial using multi-micronutrient fortified rice

Seyoum, Y., Greffeuille, V., Kouadio, D. K. D., Kuong, K., Turpin, W., M’Rabt, R., Chochois, V., Fortin, S., Pérignon, M., Fiorentino, M., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-49093-4 · Cited by 14

Comparing the Microbiome of the Adenoids in Children with Secretory Otitis Media and Children without Middle Ear Effusion

Sokolovs-Karijs, O., Brīvība, M., Saksis, R., Rozenberga, M., Bunka, L., Girotto, F., Osīte, J., Reinis, A., Sumeraga, G., & Krūmiņa, A. (2024) · Microorganisms · doi:10.3390/microorganisms12081523 · Cited by 13

Infant Microbiota Communities and Human Milk Oligosaccharide Supplementation Independently and Synergistically Shape Metabolite Production and Immune Responses in Healthy Mice

Tripp, P., Davis, E. C., Gurung, M., da Rosa, F. T., Bode, L., Fox, R., LeRoith, T., Simecka, C. M., Seppo, A., Järvinen, K. M., et al. (2024) · Journal of Nutrition · doi:10.1016/j.tjnut.2024.07.031 · Cited by 14

Gut Microbial Changes Associated With Obesity in Youth With Type 1 Diabetes

Ismail, H. M., Perera, D. N., Mandal, R. K., DiMeglio, L. A., Evans‐Molina, C., Hannon, T. S., Petrosino, J. F., Cregeen, S. J., & Schmidt, N. W. (2024) · The Journal of Clinical Endocrinology & Metabolism · doi:10.1210/clinem/dgae529 · Cited by 17

Gut microbiome structure and function in asymptomatic diverticulosis

Hua, X., McGoldrick, J., Nakrour, N., Staller, K. D., Chung, D. C., Xavier, R. J., & Khalili, H. (2024) · Genome Medicine · doi:10.1186/s13073-024-01374-9 · Cited by 13

The skin microbiome stratifies patients with cutaneous T cell lymphoma and determines event-free survival

Licht, P., Dominelli, N., Kleemann, J., Pastore, S., Müller, E.-S., Haist, M., Hartmann, K. S., Stege, H. M., Bros, M., Meißner, M., et al. (2024) · npj Biofilms and Microbiomes · doi:10.1038/s41522-024-00542-4 · Cited by 16

Next-generation IgA-SEQ allows for high-throughput, anaerobic, and metagenomic assessment of IgA-coated bacteria

van Gogh, M., Louwers, J. M., Celli, A., Gräve, S., Viveen, M. C., Bosch, S., de Boer, N. K. H., Verheijden, R. J., Suijkerbuijk, K. P. M., Brand, E. C., et al. (2024) · Microbiome · doi:10.1186/s40168-024-01923-9 · Cited by 15

Early reduction in gut microbiota diversity in critically ill patients is associated with mortality

Wozniak, H., Gaïa, N., Lazarević, V., Terrier, C. L., Beckmann, T. S., Balzani, E., Urner, M., Pugin, J., Schrenzel, J., Heidegger, C., et al. (2024) · Annals of Intensive Care · doi:10.1186/s13613-024-01407-x · Cited by 13

Impact of daily avocado consumption on gut microbiota in adults with abdominal obesity: an ancillary study of HAT, a randomized controlled trial

Yang, J., Lei, O. K., Bhute, S. S., Kris‐Etherton, P. M., Lichtenstein, A. H., Matthan, N. R., Petersen, K. S., Sabaté, J., Reboussin, D. M., Lovato, L., et al. (2024) · Food & Function · doi:10.1039/d4fo03806a · Cited by 13

Neonates exposed to HIV but uninfected exhibit an altered gut microbiota and inflammation associated with impaired breast milk antibody function

Byrne, A., Diener, C., Brown, B. P., Maust, B. S., Feng, C., Alinde, B., Gibbons, S. M., Koch, M. A., Gray, C. M., Jaspan, H. B., et al. (2024) · Microbiome · doi:10.1186/s40168-024-01973-z · Cited by 13

Chemical pollution drives taxonomic and functional shifts in marine sediment microbiome, influencing benthic metazoans

Xu, L.-L., McIlroy, S. E., Ni, Y., Guibert, I., Chen, J., da Rocha, U. N., Baker, D. M., & Panagiotou, G. (2025) · ISME Communications · doi:10.1093/ismeco/ycae141 · Cited by 13

Gut microbiome shifts in adolescents after sleeve gastrectomy with increased oral-associated taxa and pro-inflammatory potential

Akagbosu, C., McCauley, K. E., Namasivayam, S., Romero-Soto, H. N., O'Brien, W. N., Bacorn, M., Bohrnsen, E., Schwarz, B. H., Mistry, S., Burns, A. S., et al. (2025) · Gut Microbes · doi:10.1080/19490976.2025.2467833 · Cited by 12

Microbiota associated with caries and apical periodontitis: A next‐generation sequencing study

Tak, E. J., Park, O., Lee, J., Yoo, Y., Perinpanayagam, H., Jeong, Y., Lee, J., Bae, J., Kum, K., & Han, S. H. (2025) · International Endodontic Journal · doi:10.1111/iej.14218 · Cited by 16

Perinatal bisphenol A exposure impairs gut microbial colonization: Implications for offspring obesity and neurodevelopment

López‐Moreno, A., Torres-Sánchez, A., Suárez, A., Ruiz-Rodriguez, A., & Aguilera, J. (2025) · Ecotoxicology and Environmental Safety · doi:10.1016/j.ecoenv.2025.118295 · Cited by 16

Mediation effect and metabolic pathways of gut microbiota in the associations between lifestyles and dyslipidemia

Zeng, L., Yu, B., Zeng, P., Duoji, Z., Zuo, H., Lian, J., Yang, T., Dai, Y., Feng, Y., Peng, Y., et al. (2025) · npj Biofilms and Microbiomes · doi:10.1038/s41522-025-00721-x · Cited by 15

Investigation of associations between the neonatal gut microbiota and severe viral lower respiratory tract infections in the first 2 years of life: a birth cohort study with metagenomics

García-Mauriño, C., Shao, Y., Miltz, A. R., Lawley, T. D., Rodger, A., & Field, N. M. (2025) · The Lancet Microbe · doi:10.1016/j.lanmic.2024.101072 · Cited by 14

Restoring Balance: Probiotic Modulation of Microbiota, Metabolism, and Inflammation in SSRI-Induced Dysbiosis Using the SHIME® Model

de Oliveira, M. T., de Oliveira, F. L., Salgaço, M. K., Mesa, V., Sartoratto, A., Duailibi, K., Raimundo, B. V. B., Ramos, W. S., & Sivieri, K. (2025) · Pharmaceuticals · doi:10.3390/ph18081132 · Cited by 14

Randomized quantile residuals for diagnosing zero-inflated generalized linear mixed models with applications to microbiome count data

Bai, W. G., Dong, M., Li, L., Feng, C. X., & Xu, W. (2021) · BMC Bioinformatics · doi:10.1186/s12859-021-04371-6 · Cited by 13

Alterations in infant gut microbiome composition and metabolism after exposure to glyphosate and Roundup and/or a spore-based formulation using the SHIME technology

Mesnage, R., Calatayud, M., Duysburgh, C., Marzorati, M., & Antoniou, M. N. (2022) · Gut Microbiome · doi:10.1017/gmb.2022.5 · Cited by 15

New perspectives on an old grouping: The genomic and phenotypic variability of Oxalobacter formigenes and the implications for calcium oxalate stone prevention

Chmiel, J. A., Carr, C., Stuivenberg, G. A., Venema, R., Chanyi, R. M., Al, K. F., Giguere, D. J., Say, H., Akouris, P. P., Romero, S. A. D., et al. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.1011102 · Cited by 13

Microbiota from Preterm Infants Who Develop Necrotizing Enterocolitis Drives the Neurodevelopment Impairment in a Humanized Mouse Model

Lu, J. N., Drobyshevsky, A., Lu, L., Yu, Y., Caplan, M. S., & Claud, E. C. (2023) · Microorganisms · doi:10.3390/microorganisms11051131 · Cited by 16

Systematic Microbiome Dysbiosis Is Associated with IgA Nephropathy

Cai, F., Zhou, C., Jiao, N., Liang, X., Ye, Z., Chen, W., Yang, Q., Peng, H., Tang, Y. C., Niu, C., et al. (2023) · Microbiology Spectrum · doi:10.1128/spectrum.05202-22 · Cited by 13

Temperature and the microbial environment alter brain morphology in a larval amphibian

Emerson, K. J., Fontaine, S. S., Kohl, K. D., & Woodley, S. K. (2023) · Journal of Experimental Biology · doi:10.1242/jeb.245333 · Cited by 13

Thermal Therapy Modulation of the Psoriasis-Associated Skin and Gut Microbiome

Manara, S., Beghini, F., Masetti, G., Armanini, F., Geat, D., Galligioni, G., Segata, N., Farina, S., & Cristofolini, M. (2023) · Dermatology and Therapy · doi:10.1007/s13555-023-01036-5 · Cited by 14

The core phageome and its interrelationship with preterm human milk lipids

Yew, W. C., Young, G. R., Nelson, A., Cheung, W., Stewart, C. J., Bridge, S. H., Granger, C. L., Berrington, J. E., Embleton, N. D., & Smith, D. (2023) · Cell Reports · doi:10.1016/j.celrep.2023.113373 · Cited by 13

Maternal diet shapes infant microbiota and defensive capacity against infections in early life via differential human milk composition

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Effect of green banana and pineapple fibre powder consumption on host gut microbiome

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Sugar lowering in fermented apple-pear juice orchestrates a promising metabolic answer in the gut microbiome and intestinal integrity

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Bifidobacterium species serve as key gut microbiome regulators after intervention in gestational diabetes mellitus

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Interspecies differences in the transcriptome response of corals to acute heat stress

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Impact of Ketogenic and Mediterranean Diets on Gut Microbiota Profile and Clinical Outcomes in Drug-Naïve Patients with Diabesity: A 12-Month Pilot Study

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The food additive butylated hydroxyanisole minimally affects the human gut microbiome ex vivo

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Alterations in mucosa branched N -glycans lead to dysbiosis and downregulation of ILC3: a key driver of intestinal inflammation

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Characterization of microbial intolerances and ruminal dysbiosis towards different dietary carbohydrate sources using an in vitro model

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Feeding strategy and dietary preference shape the microbiome of epipelagic copepods in a warm nutrient‐impoverished ecosystem

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