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Detection of Intracellular Bacterial Communities in Human Urinary Tract Infection
Open accessAbstract
BACKGROUND: Urinary tract infections (UTIs) are one of the most common bacterial infections and are predominantly caused by uropathogenic Escherichia coli (UPEC). While UTIs are typically considered extracellular infections, it has been recently demonstrated that UPEC bind to, invade, and replicate within the murine bladder urothelium to form intracellular bacterial communities (IBCs). These IBCs dissociate and bacteria flux out of bladder facet cells, some with filamentous morphology, and ultimately establish quiescent intracellular reservoirs that can seed recurrent infection. This IBC pathogenic cycle has not yet been investigated in humans. In this study we sought to determine whether evidence of an IBC pathway could be found in urine specimens from women with acute UTI. METHODS AND FINDINGS: We collected midstream, clean-catch urine specimens from 80 young healthy women with acute uncomplicated cystitis and 20 asymptomatic women with a history of UTI. Investigators were blinded to culture results and clinical history. Samples were analyzed by light microscopy, immunofluorescence, and electron microscopy for evidence of exfoliated IBCs and filamentous bacteria. Evidence of IBCs was found in 14 of 80 (18%) urines from women with UTI. Filamentous bacteria were found in 33 of 80 (41%) urines from women with UTI. None of the 20 urines from the asymptomatic comparative group showed evidence of IBCs or filaments. Filamentous bacteria were present in all 14 of the urines with IBCs compared to 19 (29%) of 66 samples with no evidence of IBCs (p < 0.001). Of 65 urines from patients with E. coli infections, 14 (22%) had evidence of IBCs and 29 (45%) had filamentous bacteria, while none of the gram-positive infections had IBCs or filamentous bacteria. CONCLUSIONS: The presence of exfoliated IBCs and filamentous bacteria in the urines of women with acute cystitis suggests that the IBC pathogenic pathway characterized in the murine model may occur in humans. The findings support the occurrence of an intracellular bacterial niche in some women with cystitis that may have important implications for UTI recurrence and treatment.
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“IBCs have long been reported in the urine of patients with acute cystitis; however, they have not been detected in the urine of patients with acute episodes of rUTIs [25].”
From Vaginal microbiota and urinary tract infections in women: the protective role of vaginal lactobacilli in counteracting urinary tract infections occurrence and recurrence (2026) · cites this paper as [25]
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Management of Uncomplicated Recurrent Urinary Tract Infections
Vahlensieck, W., Perepanova, T. S., Johansen, T. E. B., Peter Tenke, A., Naber, K. G., & Wagenlehner, F. R. A. (2016) · European Urology Supplements · doi:10.1016/j.eursup.2016.04.007 · Cited by 28
Morphological plasticity of bacteria-Open questions.
Shen, J.-P., & Chou, C.-F. (2016) · Biomicrofluidics · doi:10.1063/1.4953660 · Cited by 29
Chieng, C. C. Y., Kong, Q., Liou, N., Khasriya, R., & Horsley, H. (2023) · Mucosal Immunology · doi:10.1016/j.mucimm.2022.12.003 · Cited by 27
Amalaradjou, M. A. R., & Venkitanaray, K. (2013) · InTech eBooks · doi:10.5772/55200 · Cited by 27
Kuwahara, H., Myers, C. J., & Samoilov, M. S. (2010) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1000723 · Cited by 27
“Type 1 fimbriae are further thought to aid the UPEC infection process by enhancing the ability of bacteria to form biofilms and to develop intracellular bacterial communities (IBCs) with biofilm-like properties [13–18].”
BackgroundJakobsen, L., Hammerum, A. M., & Møller, J. K. (2010) · Journal of Clinical Microbiology · doi:10.1128/jcm.00281-10 · Cited by 27
“coli B2 isolates from healthy pigs, broiler chickens, pork, and broiler chicken meat in a murine model of ascending UTI, which is representative of UTI in humans (2, 4, 11).”
BackgroundFloyd, K. A., Mitchell, C. A., Eberly, A. R., Colling, S. J., Zhang, E. W., DePas, W. H., Chapman, M. R., Conover, M., Rogers, B. R., Hultgren, S. J., et al. (2016) · Journal of Bacteriology · doi:10.1128/jb.00030-16 · Cited by 27
“Studies assessing human urine voided by patients with acute urinary tract infections (UTI) demonstrated the formation of IBCs in humans (23), while the prevalence of IBCs in children is predictive of future recurrences (24).”
BackgroundSelf-citationIsidro-Coxca, M. I., Ortiz-Jiménez, S., & Puente, J. L. (2024) · Archives of Microbiology · doi:10.1007/s00203-024-04092-3 · Cited by 26
Laubacher, M. E., Melquist, A. L., Chandramohan, L., & Young, K. D. (2012) · Journal of Bacteriology · doi:10.1128/jb.01450-12 · Cited by 26
Recurrent urinary tract infection in women and overactive bladder – Is there a relationship?
Ke, Q., Lee, C., & Kuo, H. (2020) · Tzu Chi Medical Journal · doi:10.4103/tcmj.tcmj_38_20 · Cited by 26
“Immunofluorescence evidence showed that 18% of women with acute uncomplicated cystitis presented IBCs in the bladder [35].”
BackgroundBallesteros‐Monrreal, M. G., Arenas-Hernández, M. M. P., Barrios-Villa, E., Juárez, J., Álvarez-Ainza, M. L., Taboada, P., López, R. D. L. R., Bolado-Martínez, E., & Valencia, D. (2021) · Microorganisms · doi:10.3390/microorganisms9112381 · Cited by 27
“This is in accordance with the reported by Robino, Rosen, and Martinez-Figueroa [11,17,40].”
ResultLee, A. S., Lamanna, O. K., Ishida, K., Hill, E., Nguyen, A. H., & Hsieh, M. H. (2022) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2022.794323 · Cited by 26
Vitamin D-deficient mice have more invasive urinary tract infection
Hertting, O., Lüthje, P., Sullivan, D. P., Aspenström, P., & Brauner, A. (2017) · PLoS ONE · doi:10.1371/journal.pone.0180810 · Cited by 26
Altered urothelial ATP signaling in a major subset of human overactive bladder patients with pyuria
Contreras‐Sanz, A., Krska, L., Balachandran, A., Curtiss, N. L., Khasriya, R., Kelley, S. P., Strutt, M., Gill, H., Taylor, K. M. G., Mansfield, K. J., et al. (2016) · American Journal of Physiology-Renal Physiology · doi:10.1152/ajprenal.00339.2015 · Cited by 25
Beyond antibiotics: CRISPR/Cas9 triumph over biofilm-associated antibiotic resistance infections
Zuberi, A., Ahmad, N., Ahmad, H., Saeed, M., & Ahmad, I. (2024) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2024.1408569 · Cited by 26
Conformational ensembles in Klebsiella pneumoniae FimH impact uropathogenesis
Lopatto, E. D. B., Pinkner, J. S., Sanick, D. A., Potter, R. F., Liu, L. X., Villicaña, J. B., Tamadonfar, K. O., Ye, Y., Zimmerman, M. I., Gualberto, N. C., et al. (2024) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2409655121 · Cited by 24
Self-citationGill, K., Kang, R., Sathiananthamoorthy, S., Khasriya, R., & Malone‐Lee, J. (2018) · International Urogynecology Journal · doi:10.1007/s00192-018-3558-x · Cited by 24
“Quantitative microbiological bacterial culture remains the reference gold standard in the diagnosis of urinary tract infection (UTI).”
BackgroundInfluentialGonzález, M. J., Zunino, P., Scavone, P., & Robino, L. (2020) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2020.542755 · Cited by 24
Hayes, B. W., Choi, H., Rathore, A. P. S., Bao, C., Shi, J.-L., Huh, Y., Kim, M. W., Mencarelli, A., Bist, P., Ng, L., et al. (2024) · Science immunology · doi:10.1126/sciimmunol.adi5578 · Cited by 24
“Urinary tract infections (UTIs) account for a high number of clinical visits each year, in part because of the high susceptibility of women and high rates of recurrence ( 1 – 3 ).”
BackgroundDetection of Bacteria in Bladder Mucosa of Adult Females
Wolfe, A. J., Rademacher, D. J., Mores, C. R., Evans, R. J., Overholt, T. L., Halverson, T. M., Limeira, R., Matthews, C. A., Badlani, G. H., Brubaker, L. T., et al. (2023) · The Journal of Urology · doi:10.1097/ju.0000000000003189 · Cited by 23
Tofte, N., Nielsen, A. C. Y., Trøstrup, H., Andersen, C. B., Linstow, M., Hansen, B., Biering‐Sørensen, F., Høiby, N., & Moser, C. E. (2017) · Apmis · doi:10.1111/apm.12685 · Cited by 24
“The uropathogen might form a biofilm either on the surface of a catheter, in concrements or in the bladder epithelia (4, 12, 13) and can then survive significantly higher concentrations of, and standard length of treatments with, antibacterial agents than usual and thereby cause chronic infections.”
BackgroundDuraiswamy, S., Chee, J. L. Y., Chen, S., Yang, E., Lees, K., & Chen, S. L. (2018) · Infection and Immunity · doi:10.1128/iai.00740-17 · Cited by 23
“Are intracellular bacteria important for UTI in humans? Structures that are morphologically indistinguishable from IBCs generated in experimental mouse infections have been observed in the urine sediment of acutely infected humans, based on extensive histological, microscopic, and ultrastructural characterization, in…”
BackgroundA Novel Device-Integrated Drug Delivery System for Local Inhibition of Urinary Tract Infection
Stærk, K., Grønnemose, R. B., Palarasah, Y., Kolmos, H. J., Lund, L. C., Alm, M., Thomsen, P., & Andersen, T. E. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.685698 · Cited by 23
Kim, A., Ahn, J. H., Choi, W. S., Park, H. K., Kim, S., Paick, S. H., & Kim, H. G. (2021) · International Neurourology Journal · doi:10.5213/inj.2040472.236 · Cited by 22
“The authors proposed that urine culture might not necessarily show the true conditions of the urothelium and that there could be a chronic niche for UPEC [30] (Fig.”
BackgroundResultJohnson, J. R., Drawz, S. M., Porter, S. B., & Kuskowski, M. A. (2013) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.00650-13 · Cited by 22
“For example, because azithromycin is widely distributed throughout the body and is concentrated primarily intracellularly (Table 1), these types of agents may offer adjuncts for patients suspected of harboring intracellular bacterial reservoirs (7).”
BackgroundSorrentino, F., Cartwright, R., Digesu, G. A., Tolton, L.-A., Franklin, L., Singh, A., Greco, P., & Khullar, V. (2014) · Neurourology and Urodynamics · doi:10.1002/nau.22607 · Cited by 22
“Previouswork suggests that quiescent bacterial communities may form a chronic reservoir for reinfection, leading to fluctuating bacteriuria among women with chronic LUTS.(10,24) The cross-sectional nature of our data preclude conclusions about a causal association between LUTS and bacteriuria, or indeed the direction…”
BackgroundJakobsen, L., Lundberg, C. V., & Frimodt‐Møller, N. (2020) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.01804-20 · Cited by 22
Effective Treatments of UTI—Is Intravesical Therapy the Future?
Morris, C. J., Rohn, J. L., Glickman, S., & Mansfield, K. J. (2023) · Pathogens · doi:10.3390/pathogens12030417 · Cited by 22
“Additionally, filamentous bacteria, predictive of intracellular bacterial growth, have been observed in urine from women with acute cystitis [53].”
BackgroundChavez, J. A., Christie, A. L., & Zimmern, P. E. (2020) · Urology · doi:10.1016/j.urology.2020.08.030 · Cited by 22
Urinary microbiome community types associated with urinary incontinence severity in women
Carnes, M. U., Siddiqui, N. Y., Karstens, L., Gantz, M. G., Dinwiddie, D. L., Sung, V. W., Bradley, M. S., Brubaker, L. T., Ferrando, C. A., Mazloomdoost, D., et al. (2023) · American Journal of Obstetrics and Gynecology · doi:10.1016/j.ajog.2023.10.036 · Cited by 21
Escherichia coli-Mediated Impairment of Ureteric Contractility Is Uropathogenic E. coli Specific
Floyd, R. V., Upton, M., Hultgren, S. J., Wray, S., Burdyga, T. V., & Winstanley, C. (2012) · The Journal of Infectious Diseases · doi:10.1093/infdis/jis554 · Cited by 21
“plicated urinary tract infection [16].”
Self-citationSun, J., Deering, R. W., Peng, Z., Najia, L. M., Khoo, C., Cohen, P. S., Seeram, N. P., & Rowley, D. C. (2019) · Scientific Reports · doi:10.1038/s41598-019-56005-w · Cited by 21
Konesan, J., Liu, L., & Mansfield, K. J. (2022) · Pathogens · doi:10.3390/pathogens11121471 · Cited by 20
“Additionally, filamentous bacteria have been observed in the urine of women with acute cystitis [12].”
BackgroundInnovative Strategies to Overcome Antimicrobial Resistance and Tolerance
Choudhary, M. I., Römling, U., Nadeem, F., Bilal, H. M., Zafar, M., Jahan, H., & Rahman, A. (2022) · Microorganisms · doi:10.3390/microorganisms11010016 · Cited by 20
Liu, S., Han, X., Shi, M., & Pang, Z. (2016) · Journal of Huazhong University of Science and Technology [Medical Sciences] · doi:10.1007/s11596-016-1649-9 · Cited by 20
Siddiqui, H. A., Lagesen, K., Nederbragt, A. J., Eri, L. M., Jeansson, S. L., & Jakobsen, K. S. (2014) · The Open Microbiology Journal · doi:10.2174/1874285801408010148 · Cited by 20
“Further, the routine method for culturing urine applied to patients with OAB symptoms may also fail to spot genuine UTIs; due to the high microbial threshold required, fastidious bacteria can easily evade the culture conditions and intracellular microbes may also be present [13-15].”
MethodAn encapsulated drug delivery system for recalcitrant urinary tract infection
Labbaf, S., Horsley, H., Chang, M., Stride, E., Malone‐Lee, J., Edirisinghe, M. J., & Rohn, J. L. (2013) · Journal of The Royal Society Interface · doi:10.1098/rsif.2013.0747 · Cited by 20
“Patients with UTI shed infected bladder epithelial cells into their urine as part of an immune response to infection [5,15], so”
Background
Metadata
- Authors
- Rosen, D. A., Hooton, T. M., Stamm, W. E., Humphrey, P. A., & Hultgren, S. J.
- Affiliations
- Washington University in St. Louis (US)
- University of Miami (US)
- University of Washington (US)
- Venue
- PLoS Medicine
- Publisher
- Public Library of Science (PLoS)
- Published
- 2007-12-18
- Volume
- 4
- Issue
- 12
- Pages
- e329
- ISSN
- 1549-1277 (ISSN-L)
- 1549-1676
- PMC
- PMC2140087
- OpenAlex
- W2118051267
- Cited by
- 651
- References
- 31
- Citations by year
- 2026: 28 · 2025: 33 · 2024: 40 · 2023: 35 · 2022: 35 · 2021: 41 · 2020: 36 · 2019: 36 · 2018: 23 · 2017: 42 · 2016: 55 · 2015: 37 · 2014: 39 · 2013: 42 · 2012: 29
- FWCI
- 16.58
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- PLoS Medicine (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Digital Commons@Becker (Washington University School of Medicine) (submittedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- University of Washington
- National Institutes of Health
- National Institute of Diabetes and Digestive and Kidney Diseases (P01DK053369, DK-53369, R01 DK64540, P50DK064540, DK051406, P01 DK53369, DK64540, R01DK051406)
- Office of Research on Women's Health
- Topics
- Health Sciences › Medicine › Urology › Urinary Tract Infections Management
- Life Sciences › Immunology and Microbiology › Microbiology › Escherichia coli research studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Bacterial biofilms and quorum sensing
- Keywords
- urinary tract infection, intracellular bacterial communities, uropathogenic Escherichia coli, acute uncomplicated cystitis, filamentous bacteria, recurrent urinary tract infection, women, bladder urothelium, human urine
- MeSH terms
- Acute Disease, Adult, Animals, Bacteria, Urinary Bladder, Cystitis, Disease Models, Animal, Escherichia coli Infections, Female, Fluorescent Antibody Technique, Humans, Mice, Inbred C3H, Microscopy, Electron, Scanning, Middle Aged, Recurrence, Urinary Tract Infections, Urine, Case-Control Studies, Urothelium, Mice
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