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Commensal Bacteria-Dependent Indole Production Enhances Epithelial Barrier Function in the Colon
Open accessAbstract
Microbiota have been shown to have a great influence on functions of intestinal epithelial cells (ECs). The role of indole as a quorum-sensing (QS) molecule mediating intercellular signals in bacteria has been well appreciated. However, it remains unknown whether indole has beneficial effects on maintaining intestinal barriers in vivo. In this study, we analyzed the effect of indole on ECs using a germ free (GF) mouse model. GF mice showed decreased expression of junctional complex molecules in colonic ECs. The feces of specific pathogen-free (SPF) mice contained a high amount of indole; however the amount was significantly decreased in the feces of GF mice by 27-fold. Oral administration of indole-containing capsules resulted in increased expression of both tight junction (TJ)- and adherens junction (AJ)-associated molecules in colonic ECs in GF mice. In accordance with the increased expression of these junctional complex molecules, GF mice given indole-containing capsules showed higher resistance to dextran sodium sulfate (DSS)-induced colitis. A similar protective effect of indole on DSS-induced epithelial damage was also observed in mice bred in SPF conditions. These findings highlight the beneficial role of indole in establishing an epithelial barrier in vivo.
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“Indeed, indole has been demonstrated to affect host intestinal epithelial barrier integrity (Bansal et al., 2010), modulate intestinal inflammation (Lamas et al., 2016) and protect against mortality following chemically-induced colitis (Shimada et al., 2013), as well as positively affect host longevity (Sonowal et al., 2017).”
From The Microbiota-Gut-Brain Axis (2019) · cites this paper as Shimada et al., 2013
In the citing paper
“Importantly, supplementation of indole capsules restored gut barrier integrity by elevating junctional protein expression in GF mice.90”
From Regulation of Intestinal Barrier Function by Microbial Metabolites (2021) · cites this paper as [90]
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“It was reported that indole levels in fecal samples of germ-free (GF) mice were 27-fold lower compared with conventionally raised mice.90”
From Regulation of Intestinal Barrier Function by Microbial Metabolites (2021) · cites this paper as [90]
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“TJ and AJ proteins (Cldn7, Ocln, ZO-1, E-cadherin 1) are significantly decreased in GF mice compared with conventionally raised mice.90”
From Regulation of Intestinal Barrier Function by Microbial Metabolites (2021) · cites this paper as [90]
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Cites
Host-gut microbiota metabolic interactions
Nicholson, J. K., Holmes, E., Kinross, J., Burcelin, R., Gibson, G., Jia, W., & Pettersson, S. (2012) · Science · doi:10.1126/science.1223813 · Cited by 4,760
Functional interactions between the gut microbiota and host metabolism
Tremaroli, V., & Bäckhed, F. (2012) · Nature · doi:10.1038/nature11552 · Cited by 4,387
Intestinal mucosal barrier function in health and disease
Turner, J. R. (2009) · Nature reviews. Immunology · doi:10.1038/nri2653 · Cited by 3,952
Bifidobacteria can protect from enteropathogenic infection through production of acetate
Fukuda, S., Toh, H., Hase, K., Oshima, K., Nakanishi, Y., Yoshimura, K., Tobe, T., Clarke, J. M., Topping, D. L., Suzuki, T., et al. (2011) · Nature · doi:10.1038/nature09646 · Cited by 2,387
Immune adaptations that maintain homeostasis with the intestinal microbiota
Hooper, L. V., & Macpherson, A. J. (2010) · Nature reviews. Immunology · doi:10.1038/nri2710 · Cited by 1,530
Kim, M. H., Kang, S. G., Park, J. H., Yanagisawa, M., & Kim, C. H. (2013) · Gastroenterology · doi:10.1053/j.gastro.2013.04.056 · Cited by 1,127
Listening in on bacteria: acyl-homoserine lactone signalling
Fuqua, C., & Greenberg, E. P. (2002) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm907 · Cited by 1,081
Indole as an intercellular signal in microbial communities
Lee, J.-H., & Lee, J. (2010) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.2009.00204.x · Cited by 1,059
Bacteria–host communication: the language of hormones
Sperandio, V., Torres, A. G., Jarvis, B., Nataro, J. P., & Kaper, J. B. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1537100100 · Cited by 902
Dextran Sodium Sulphate Colitis Mouse Model: Traps and Tricks
Perše, M., & Cerar, A. (2012) · BioMed Research International · doi:10.1155/2012/718617 · Cited by 886
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Items 301–400 of 405
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Michie, L. A., & Tucker, H. O. (2019) · PubMed · Cited by 5
Wen, Y. (2026) · Frontiers in Veterinary Science · doi:10.3389/fvets.2026.1807477 · Cited by 5
Lisowska‐Myjak, B., Zborowska, H., Jaźwiec, R., Karlińska, M., & Skarżyńska, E. (2021) · PLoS ONE · doi:10.1371/journal.pone.0259501 · Cited by 4
Zhu, X., Sylvetsky, A. C., McCullough, M. L., Welsh, J. A., Hartman, T. J., Ferranti, E. P., & Um, C. Y. (2025) · Journal of Nutrition · doi:10.1016/j.tjnut.2025.02.022 · Cited by 4
Liu, X., Fu, C., Gao, Q., Zhang, H., Shi, T., Li, G., Wang, Y., & Shang, Y. (2025) · Metabolites · doi:10.3390/metabo15110736 · Cited by 3
Paradigms for microbiome analysis in infectious and non-communicable diseases
Autenrieth, I. B., Bury, L., Rooney, A. M., Willmann, M., Vehreschild, M. J. G. T., & Egli, A. (2025) · Trends in Microbiology · doi:10.1016/j.tim.2025.11.016 · Cited by 3
Gahlot, S., Subodh, & Singh, J. (2025) · FEBS Journal · doi:10.1111/febs.70379 · Cited by 3
Osteoporosis and gut microbiota: current understandings
Liu, Y., Lü, S., Bai, R., Han, P., Zha, Y., & Jiang, X. (2026) · Frontiers in Immunology · doi:10.3389/fimmu.2026.1761421 · Cited by 3
Liu, W.-L., Wan, S., Xu, R.-N., Tian, S.-P., & Xu, J.-Z. (2025) · Molecular Catalysis · doi:10.1016/j.mcat.2025.114958 · Cited by 3
Biochemical Features of Beneficial Microbes: Foundations for Therapeutic Microbiology
Engevik, M. A., & Versalovic, J. A. (2018) · ASM Press eBooks · doi:10.1128/9781555819705.ch1 · Cited by 2
Metabolism of Dietary Substrates by Intestinal Bacteria and Consequences for the Host Intestine
Blachier, F. (2023) · Springer eBooks · doi:10.1007/978-3-031-26322-4_3 · Cited by 4
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Peng, X., Khan, Z., Dong, Y., & Xing, L. (2025) · International Journal of Molecular Sciences · doi:10.3390/ijms26041543 · Cited by 3
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Fernández-García, L., Blasco, L., Trastoy, R., García‐Contreras, R., Wood, T. K., & Tomás, M. (2018) · Springer eBooks · doi:10.1007/978-981-13-2429-1_3 · Cited by 3
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Song, S., & Wood, T. K. (2022) · Environmental Microbiology Reports · doi:10.1111/1758-2229.13100 · Cited by 3
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Omar, T. M., Al-Hussainy, A. F., Jyothi, S. R., Nayak, P. P., Janney, J. B., Singh, G., Polatova, D., Sameer, H. N., Salih, R. M., Adil, M., et al. (2025) · Expert Review of Anticancer Therapy · doi:10.1080/14737140.2025.2579656 · Cited by 2
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Tang, C., Ouyang, K., Qu, M., & Qiu, Q. (2025) · Agriculture · doi:10.3390/agriculture15242579 · Cited by 2
Codonopsis pilosula polysaccharides in intestinal flora and intestinal homeostasis: A review
Wang, X.-J., Li, X.-Y., Shang, J., Zhang, Y.-L., Ren, L., Ma, J., Sheng, L., Peng, S., & Zhang, L. (2026) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2025.150034 · Cited by 2
Obata, Y., & Hase, K. (2015) · Inflammation and Regeneration · doi:10.2492/inflammregen.35.003 · Cited by 2
Hazenberg, M. D. (2018) · Blood · doi:10.1182/blood-2018-10-878652 · Cited by 2
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Rosette, C., Mazzetti, A., Camerini, R., Moro, L., & Gerloni, M. (2019) · Journal of Infectiology · doi:10.29245/2689-9981/2019/4.1145 · Cited by 1
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Metabolism of alimentary compounds by the intestinal microbiota and consequences for gut health
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Izquierdo-Sandoval, D., Duan, X. L., Fryganas, C., Portolés, T., Sancho, J. V., & Rubert, J. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.10.24.562654 · Cited by 3
Fedotova, M. M., Prokopyeva, V. D., Dochkin, V. A., Boguta, V. D., & Fedorova, O. S. (2022) · Voprosy Pitaniya · doi:10.33029/0042-8833-2022-91-5-16-28 · Cited by 3
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Sen, D., Datta, S., Biswas, S., Samadder, A., & Nandi, S. (2025) · Current Cancer Drug Targets · doi:10.2174/0115680096373099250709100217 · Cited by 1
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Alsaadi, A. I., Wehkamp, L., Pothakamury, A. A., Yahia, M. S., Prasad, P., Gilloteau, C., Sadler, J., Smith, J. D., Jenkins, B. C., Diven, G. S., et al. (2026) · Cell Reports · doi:10.1016/j.celrep.2026.117730 · Cited by 1
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Martínez‐Porchas, M., Medina‐Félix, D., Olivas-Bernal, C. A., Guirado-Flores, J. S. O., Vargas‐Albores, F., Porchas‐Quijada, M., & Garibay-Valdéz, E. (2026) · Advanced Gut & Microbiome Research · doi:10.1155/agm3/8142006 · Cited by 1
El-Dalatony, M. M., El-Sheekh, M. M., & Li, X. (2020) · Springer eBooks · doi:10.1007/978-981-15-4759-1_6 · Cited by 1
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Yousof, H.-A. S. A. (2023) · Journal of the Egyptian Society of Parasitology · doi:10.21608/jesp.2023.297352 · Cited by 1
Densil, A., George, M. E., Mahdi, H., Chami, A., Mark, A., Luo, C., Wang, Y., Ali, A., Tang, P., Dong, A., et al. (2023) · Frontiers in Systems Biology · doi:10.3389/fsysb.2023.1274184 · Cited by 1
Indole modulates lipoteichoic acid-induced inflammatory response in duck intestinal epithelial cells
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Gridnyev, O., Fadieienko, G. D., Kushnir, I. Е., & Gridnieva, S. V. (2023) · Modern Gastroenterology · doi:10.30978/mg-2023-1-55
Nisley, M. J. (2023) · doi:10.31274/td-20240329-450 · Cited by 1
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Prezza, G., Fansler, R. T., Guest, T., Mädler, G., Schlauch, H., Zhu, W., & Westermann, A. J. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.09.08.672848 · Cited by 1
Activation mechanism of AhR pathway in intestinal epithelial cells by commensal bacteria
Marinelli, L. (2018) · theses.fr (ABES) · doi:10.70675/fcff0336z601cz4152z97f7z6e398d94c34b · Cited by 1
Tarraf, A. A. (2021) · theses.fr (ABES) · doi:10.70675/545bd347z20bcz444cza534z622ac595baf9 · Cited by 1
Lactobacilli- and Staphylococcus aureus mediated modulation of immune responses in vitro
Haileselassie, Y. (2016) · DiVA (Stockholm University)
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Tyc, O. (2016) · doi:10.18174/383745
Shi, X., Li, Z., Lin, W., Hu, R., Chen, G., Li, X., Lee, X., & Zhang, S. (2021) · Research Square · doi:10.21203/rs.3.rs-961658/v1
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Park, G., & Song, S. (2021) · Journal of Dairy Science and Biotechnology · doi:10.22424/jdsb.2021.39.4.145
Waclawiková, B., Schwalbe, M., & Aidy, S. E. (2022) · Research Square · doi:10.21203/rs.3.rs-1374818/v1
Impact of indigenous microbiota in gut inflammatory disorders
Arifa, R. D. D. N., de Brito, C. B., Batista, R. R. A., Fagundes, M., Souza, D. G., & Fagundes, C. T. (2022) · Elsevier eBooks · doi:10.1016/b978-0-323-91313-3.00011-8
Jin, X., Wu, J., Wang, C., Tang, B., Yang, H., & Liu, Y. (2023) · doi:10.22541/au.167587024.47659435/v1
Dennis, P. G., Hoelzle, R. D., Rashid, R. B., Sikder, M. A. A., Lyons, R., Stark, T., & Phipps, S. (2023) · Research Square · doi:10.21203/rs.3.rs-2641343/v1
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Li, M., Sun, S., Sun, K., Lv, B., & Fan, Y. (2023) · World Chinese Journal of Digestology · doi:10.11569/wcjd.v31.i21.896 · Cited by 1
Butowski, C. F., Young, W., Thomas, D. G., & Bermingham, E. N. (2024) · Journal of Applied Animal Nutrition · doi:10.1163/2049257x-20241006
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Rozova, K. V., Kovalchuk, O. I., Raskaley, T. Y., Раскалєй, В. Б., Khmelnytska, Y. K., Petrushchenkova, M. S., & Malyuga, S. S. (2024) · Bulletin of Problems Biology and Medicine · doi:10.29254/2077-4214-2024-3-174-76-86
Ali, A., & Mousa, W. K. (2025) · Springer eBooks · doi:10.1007/978-981-96-1305-2_15
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Smits, J. P. H., Casado, C. G., van den Bogaard, E. H. J., & Homey, B. (2025) · Springer eBooks · doi:10.1007/978-3-031-82689-4_10
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Yin, Z., Qiu, Y., Yang, Y., Wang, M., Yue, S., Song, B., Chen, Z., Wu, J., & Wang, Z. (2025) · Medicine · doi:10.1097/md.0000000000043967
Gut microbial composition modulates food-specific CD4+ T cells in food allergy 2256989
Weingarden, A. R., Dahlberg, F., Broude, C. N., Meng, X., Jain, S., Weakley, A. M., Cabrera, A. V., Dileepan, T., Fischbach, M. A., & Jenkins, M. K. (2026) · The Journal of Immunology · doi:10.1093/jimmun/vkag141.381
Hu, J., Chen, J., Xu, X., Hou, Q., Ren, J., & Yan, X. (2023) · Figshare · doi:10.6084/m9.figshare.22790393
Hu, J., Chen, J., Xu, X., Hou, Q., Ren, J., & Yan, X. (2023) · Figshare · doi:10.6084/m9.figshare.22790387
Ouyang, C., Liu, P., Liu, Y., Lan, J., & Liu, Q. (2024) · Figshare · doi:10.6084/m9.figshare.26420385
Liu, D., Zhang, S., Li, S., Zhang, Q., Cai, Y., Li, P., Li, H., Shen, B., Liao, Q., Hong, Y., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26583216
Liu, D., Zhang, S., Li, S., Zhang, Q., Cai, Y., Li, P., Li, H., Shen, B., Liao, Q., Hong, Y., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26583234
Hu, J., Chen, J., Xu, X., Hou, Q., Ren, J., & Yan, X. (2023) · Figshare · doi:10.6084/m9.figshare.22790384
Hu, J., Chen, J., Xu, X., Hou, Q., Ren, J., & Yan, X. (2023) · Figshare · doi:10.6084/m9.figshare.22790399
Liu, D., Zhang, S., Li, S., Zhang, Q., Cai, Y., Li, P., Li, H., Shen, B., Liao, Q., Hong, Y., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26583225
Liu, D., Zhang, S., Li, S., Zhang, Q., Cai, Y., Li, P., Li, H., Shen, B., Liao, Q., Hong, Y., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26583219
Hu, J., Chen, J., Xu, X., Hou, Q., Ren, J., & Yan, X. (2023) · Figshare · doi:10.6084/m9.figshare.22790420
Hu, J., Chen, J., Xu, X., Hou, Q., Ren, J., & Yan, X. (2023) · Figshare · doi:10.6084/m9.figshare.22790396
Hu, J., Chen, J., Xu, X., Hou, Q., Ren, J., & Yan, X. (2023) · Figshare · doi:10.6084/m9.figshare.22790381
Liu, D., Zhang, S., Li, S., Zhang, Q., Cai, Y., Li, P., Li, H., Shen, B., Liao, Q., Hong, Y., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26583222
Liu, D., Zhang, S., Li, S., Zhang, Q., Cai, Y., Li, P., Li, H., Shen, B., Liao, Q., Hong, Y., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26583228
Hu, J., Chen, J., Xu, X., Hou, Q., Ren, J., & Yan, X. (2023) · Figshare · doi:10.6084/m9.figshare.22790411
Liu, D., Zhang, S., Li, S., Zhang, Q., Cai, Y., Li, P., Li, H., Shen, B., Liao, Q., Hong, Y., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26583231
Hu, J., Chen, J., Xu, X., Hou, Q., Ren, J., & Yan, X. (2023) · Figshare · doi:10.6084/m9.figshare.22790402
Ouyang, C., Liu, P., Liu, Y., Lan, J., & Liu, Q. (2024) · Figshare · doi:10.6084/m9.figshare.26420546
Liu, D., Zhang, S., Li, S., Zhang, Q., Cai, Y., Li, P., Li, H., Shen, B., Liao, Q., Hong, Y., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26583213
Hu, J., Chen, J., Xu, X., Hou, Q., Ren, J., & Yan, X. (2023) · Figshare · doi:10.6084/m9.figshare.22790408
Hu, J., Chen, J., Xu, X., Hou, Q., Ren, J., & Yan, X. (2023) · Figshare · doi:10.6084/m9.figshare.22790390
Hu, J., Chen, J., Xu, X., Hou, Q., Ren, J., & Yan, X. (2023) · Figshare · doi:10.6084/m9.figshare.22790417
Hu, J., Chen, J., Xu, X., Hou, Q., Ren, J., & Yan, X. (2023) · Figshare · doi:10.6084/m9.figshare.22790405
Liu, D., Zhang, S., Li, S., Zhang, Q., Cai, Y., Li, P., Li, H., Shen, B., Liao, Q., Hong, Y., et al. (2023) · Figshare · doi:10.6084/m9.figshare.26583237
Liu, D., Zhang, S., Li, S., Zhang, Q., Cai, Y., Li, P., Li, H., Shen, B., Liao, Q., Hong, Y., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26583210
Hu, J., Chen, J., Xu, X., Hou, Q., Ren, J., & Yan, X. (2023) · Figshare · doi:10.6084/m9.figshare.22790414
Cheng, C., Shivanagoudra, S. R., Mukunth, A., Biradar, S., Matos, Y. A. S., Klemashevich, C. L., Kim, D. M., Wright, G. A., Ghosh, S., Jala, V. R., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2025.12.21.695859
Ghadimi, D., Blömer, S., KAYA, A. Ş., Krüger, S., Röcken, C., Schäfer, H., Uchiyama, J., Matsuzaki, S., & Bockelmann, W. (2026) · Experimental and Molecular Pathology · doi:10.1016/j.yexmp.2025.105021
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Subrahmanyam, K., Mir, T. A., Gul, M. K., Gan, R. Y., & Sehrawat, R. (2026) · Elsevier eBooks · doi:10.1016/b978-0-443-32976-0.00015-1
Sun, X., Yuanze, G., Zhang, L., Li, W., Ning, A., Ganesan, K., Li, Z., Zhang, X., Liu, H., Wang, L., et al. (2026) · Journal of Ethnopharmacology · doi:10.1016/j.jep.2026.121623
Mir, H.-D. (2018) · theses.fr (ABES) · doi:10.70675/1a6c01fbzd7e5z437bz9cc4z84ed7d02c18d
Jiang, T., Sun, J., Liu, C., Sun, Y., Chen, H., Liu, D., Chen, R., Wang, Y., Ru, Y., & Duan, J. (2026) · Toxicology and Applied Pharmacology · doi:10.1016/j.taap.2026.117862
Gut mucosal barrier: the frontline of bidirectional regulation of the gut-X axis
Xu, X. W., Hu, Y., Ruan, S., Peng, C., Han, T., Yan, P., Chan, F. K. L., & Li, J. (2026) · Medical Review · doi:10.1515/mr-2026-0009
Mokrani, M., Barz, M. L., Elie, A.-M., Renouf, E., Mérillon, J., Limam, F., Aouani, E., Marette, A., Saad, N., & Urdaci, M. C. (2026) · Pharmaceuticals · doi:10.3390/ph19081189
Gut microbial composition modulates endogenous food-specific CD4+ T cells in food allergy
Weingarden, A. R., Dahlberg, F., Broude, C. N., Meng, X., Jain, S., Weakley, A. M., Cabrera, A. V., Dileepan, T., Fischbach, M. A., & Jenkins, M. K. (2026) · The Journal of Immunology · doi:10.1093/jimmun/vkag172
Mu, K., He, M., Liao, R., Shao, C., Xie, P., Xie, J., Liu, Y., Ju, Z., Zhong, K., Yuan, Y., et al. (2026) · Nutrients · doi:10.3390/nu18162641
Metadata
- Authors
- Shimada, Y., Kinoshita, M., Harada, K., Mizutani, M., Masahata, K., Kayama, H., & Takeda, K.
- Affiliations
- Immunology Frontier Research Center, The University of Osaka (JP)
- Japan Science and Technology Agency (JP)
- The University of Osaka (JP)
- Morishita Jintan (Japan) (JP)
- Corresponding author
- Takeda, Kiyoshi
- Venue
- PLoS ONE
- Publisher
- Public Library of Science (PLoS)
- Published
- 2013-11-20
- Volume
- 8
- Issue
- 11
- Pages
- e80604
- ISSN
- 1932-6203 (ISSN-L)
- PMC
- PMC3835565
- OpenAlex
- W2040501063
- Cited by
- 404
- References
- 41
- Citations by year
- 2026: 23 · 2025: 43 · 2024: 50 · 2023: 53 · 2022: 44 · 2021: 47 · 2020: 34 · 2019: 27 · 2018: 24 · 2017: 23 · 2016: 15 · 2015: 15 · 2014: 6
- FWCI
- 5.37
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- PLoS ONE (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Figshare (submittedVersion, cc-by)
- Funders
- Ministry of Education, Culture, Sports, Science and Technology
- Ministry of Health, Labour and Welfare
- Japan Society for the Promotion of Science (24390120)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Bacterial biofilms and quorum sensing
- Health Sciences › Medicine › Gastroenterology › Gastrointestinal motility and disorders
- Keywords
- indole, commensal bacteria, intestinal epithelial barrier, tight junctions, adherens junctions, quorum sensing, germ-free mice, DSS-induced colitis, colonic epithelial cells, gut microbiota, epithelial permeability
- MeSH terms
- Animals, Bacteria, Chromatography, High Pressure Liquid, Colon, Germ-Free Life, Indoles, Intestinal Mucosa, Mice, Tandem Mass Spectrometry, Real-Time Polymerase Chain Reaction
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