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HemI: A Toolkit for Illustrating Heatmaps

Open access
Deng, Wankun, Wang, Yongbo, Liu, Zexian, Cheng, Han, Xue, Yu·2014·PLoS ONE

Abstract

Recent high-throughput techniques have generated a flood of biological data in all aspects. The transformation and visualization of multi-dimensional and numerical gene or protein expression data in a single heatmap can provide a concise but comprehensive presentation of molecular dynamics under different conditions. In this work, we developed an easy-to-use tool named HemI (Heat map Illustrator), which can visualize either gene or protein expression data in heatmaps. Additionally, the heatmaps can be recolored, rescaled or rotated in a customized manner. In addition, HemI provides multiple clustering strategies for analyzing the data. Publication-quality figures can be exported directly. We propose that HemI can be a useful toolkit for conveniently visualizing and manipulating heatmaps. The stand-alone packages of HemI were implemented in Java and can be accessed at http://hemi.biocuckoo.org/down.php.

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Metadata

Authors
Deng, W., Wang, Y., Liu, Z., Cheng, H., & Xue, Y.
Venue
PLoS ONE
Published
2014-11-05
Volume
9
Issue
11
Pages
e111988
ISSN
1932-6203 (ISSN-L)
OpenAlex
W2034611055
Cited by
991
References
9
FWCI
21.90
Type
journal article
Language
en
Open access
gold

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CoChat. (2026). Citation check: HemI: A Toolkit for Illustrating Heatmaps. https://app.cochat.ai/papers/10.1371/journal.pone.0111988
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Deng, W., Wang, Y., Liu, Z., Cheng, H., & Xue, Y. (2014). HemI: A Toolkit for Illustrating Heatmaps. PLoS ONE. https://doi.org/10.1371/journal.pone.0111988

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