The DOI matches its Crossref record; 6 of the 6 references it cites were found in a registry or an index.
(Patho‐)physiological relevance of PINK1‐dependent ubiquitin phosphorylation
Open accessAbstract
Mutations in PINK1 and PARKIN cause recessive, early-onset Parkinson's disease (PD). Together, these two proteins orchestrate a protective mitophagic response that ensures the safe disposal of damaged mitochondria. The kinase PINK1 phosphorylates ubiquitin (Ub) at the conserved residue S65, in addition to modifying the E3 ubiquitin ligase Parkin. The structural and functional consequences of Ub phosphorylation (pS65-Ub) have already been suggested from in vitro experiments, but its (patho-)physiological significance remains unknown. We have generated novel antibodies and assessed pS65-Ub signals in vitro and in cells, including primary neurons, under endogenous conditions. pS65-Ub is dependent on PINK1 kinase activity as confirmed in patient fibroblasts and postmortem brain samples harboring pathogenic mutations. We show that pS65-Ub is reversible and barely detectable under basal conditions, but rapidly induced upon mitochondrial stress in cells and amplified in the presence of functional Parkin. pS65-Ub accumulates in human brain during aging and disease in the form of cytoplasmic granules that partially overlap with mitochondrial, lysosomal, and total Ub markers. Additional studies are now warranted to further elucidate pS65-Ub functions and fully explore its potential for biomarker or therapeutic development.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The cited source says what the claim attributes to it.
In the citing paper
“pS65-Ub has been shown to accumulate during aging, stress, and disease [13, 14]”
From miRNA family miR-29 inhibits PINK1-PRKN signaling via ATG9A (2026) · cites this paper as [13]
The cited source says what the claim attributes to it.
In the citing paper
“Moreover, pUbS65 has been suggested to accumulate with mitochondrial stress, age, and disease [19] and to serve as a specific signal for recognition by autophagy receptors [20, 21].”
From miR-27a and miR-27b regulate autophagic clearance of damaged mitochondria by targeting PTEN-induced putative kinase 1 (PINK1) (2016) · cites this paper as [19]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
PINK1/Parkin-mediated mitophagy is dependent on VDAC1 and p62/SQSTM1
Geisler, S., Holmström, K. M., Skujat, D., Fiesel, F. C., Rothfuss, O. C., Kahle, P. J., & Springer, W. (2010) · Nature Cell Biology · doi:10.1038/ncb2012 · Cited by 2,835
Self-citationThe Roles of PINK1, Parkin, and Mitochondrial Fidelity in Parkinson’s Disease
Pickrell, A. M., & Youle, R. J. (2015) · Neuron · doi:10.1016/j.neuron.2014.12.007 · Cited by 2,310
Parkin is activated by PINK1-dependent phosphorylation of ubiquitin at Ser65
Kazlauskaite, A., Kondapalli, C., Gourlay, R., Campbell, D. G., Ritorto, M. S., Hofmann, K., Alessi, D. R., Knebel, A., Trost, M., & Muqit, M. M. K. (2014) · Biochemical Journal · doi:10.1042/bj20140334 · Cited by 806
Shiba-Fukushima, K., Imai, Y., Yoshida, S., Ishihama, Y., Kanao, T., Sato, S., & Hattori, N. (2012) · Scientific Reports · doi:10.1038/srep01002 · Cited by 577 · cited 1×
“PINK1 has been shown to phosphorylate Parkin [4–6] in its N-terminal Ub-like (UBL) domain, which is required for Parkin’s structural [7] and functional activation [8].”
Direct Conversion of Fibroblasts to Neurons by Reprogramming PTB-Regulated MicroRNA Circuits
Xue, Y., Ouyang, K., Huang, J., Zhou, Y., Ouyang, H., Li, H., Wang, G., Wu, Q., Wei, C., Bi, Y., et al. (2013) · Cell · doi:10.1016/j.cell.2012.11.045 · Cited by 562
Parkin-catalyzed Ubiquitin-Ester Transfer Is Triggered by PINK1-dependent Phosphorylation
Iguchi, M., Kujuro, Y., Okatsu, K., Koyano, F., Kosako, H., Kimura, M., Suzuki, N., Uchiyama, S., Tanaka, K., & Matsuda, N. (2013) · Journal of Biological Chemistry · doi:10.1074/jbc.m113.467530 · Cited by 209
Research works printed but not linked: 37
- Scarffe LA, Stevens DA, Dawson VL, Dawson TM (2014) Parkin and PINK1: much more than mitophagy. Trends Neurosci 37: 315–324 · DOI · Paper page
- Kondapalli C, Kazlauskaite A, Zhang N, Woodroof HI, Campbell DG, Gourlay R, Burchell L, Walden H, Macartney TJ, Deak M et al (2012) PINK1 is activated by mitochondrial membrane potential depolarization and stimulates Parkin E3 ligase activity by phosphorylating Serine 65. Open Biol 2: 120080 · DOI · Paper page
- Caulfield TR, Fiesel FC, Moussaud‐Lamodiere EL, Dourado DF, Flores SC, Springer W (2014) Phosphorylation by PINK1 releases the UBL domain and initializes the conformational opening of the E3 ubiquitin ligase Parkin. PLoS Comput Biol 10: e1003935 · DOI
- Shiba‐Fukushima K, Inoshita T, Hattori N, Imai Y (2014b) PINK1‐mediated phosphorylation of Parkin boosts Parkin activity in Drosophila. PLoS Genet 10: e1004391 · DOI
- Fiesel FC, Moussaud‐Lamodiere EL, Ando M, Springer W (2014) A specific subset of E2 ubiquitin‐conjugating enzymes regulate Parkin activation and mitophagy differently. J Cell Sci 127: 3488–3504
- Kazlauskaite A, Kelly V, Johnson C, Baillie C, Hastie CJ, Peggie M, Macartney T, Woodroof HI, Alessi DR, Pedrioli PG et al (2014a) Phosphorylation of Parkin at Serine65 is essential for activation: elaboration of a Miro1 substrate‐based assay of Parkin E3 ligase activity. Open Biol 4: 130213 · DOI
- Dikic I, Bremm A (2014) DUBs counteract parkin for efficient mitophagy. EMBO J 33: 2442–2443 · DOI
- Kane LA, Lazarou M, Fogel AI, Li Y, Yamano K, Sarraf SA, Banerjee S, Youle RJ (2014) PINK1 phosphorylates ubiquitin to activate Parkin E3 ubiquitin ligase activity. J Cell Biol 205: 143–153 · DOI · Paper page
- Koyano F, Okatsu K, Kosako H, Tamura Y, Go E, Kimura M, Kimura Y, Tsuchiya H, Yoshihara H, Hirokawa T et al (2014) Ubiquitin is phosphorylated by PINK1 to activate parkin. Nature 510: 162–166 · DOI · Paper page
- Ordureau A, Sarraf SA, Duda DM, Heo JM, Jedrychowski MP, Sviderskiy VO, Olszewski JL, Koerber JT, Xie T, Beausoleil SA et al (2014) Quantitative proteomics reveal a feedforward mechanism for mitochondrial PARKIN translocation and ubiquitin chain synthesis. Mol Cell 56: 360–375 · DOI
- Shiba‐Fukushima K, Arano T, Matsumoto G, Inoshita T, Yoshida S, Ishihama Y, Ryu KY, Nukina N, Hattori N, Imai Y (2014a) Phosphorylation of mitochondrial polyubiquitin by PINK1 promotes Parkin mitochondrial tethering. PLoS Genet 10: e1004861 · DOI
- Zhang C, Lee S, Peng Y, Bunker E, Giaime E, Shen J, Zhou Z, Liu X (2014) PINK1 triggers autocatalytic activation of Parkin to specify cell fate decisions. Curr Biol 24: 1854–1865 · DOI
- Wauer T, Swatek KN, Wagstaff JL, Gladkova C, Pruneda JN, Michel MA, Gersch M, Johnson CM, Freund SM, Komander D (2014) Ubiquitin Ser65 phosphorylation affects ubiquitin structure, chain assembly and hydrolysis. EMBO J 34: 307–325 · DOI
- Okatsu K, Koyano F, Kimura M, Kosako H, Saeki Y, Tanaka K, Matsuda N (2015) Phosphorylated ubiquitin chain is the genuine Parkin receptor. J Cell Biol 209: 111–128 · DOI
- Siuda J, Jasinska‐Myga B, Boczarska‐Jedynak M, Opala G, Fiesel FC, Moussaud‐Lamodiere EL, Scarffe LA, Dawson VL, Ross OA, Springer W et al (2014) Early‐onset Parkinson's disease due to PINK1 p. Q456X mutation–clinical and functional study. Parkinsonism Relat Disord 20: 1274–1278 · DOI
- Su Z, Zhang Y, Gendron TF, Bauer PO, Chew J, Yang WY, Fostvedt E, Jansen‐West K, Belzil VV, Desaro P et al (2014) Discovery of a biomarker and lead small molecules to target r(GGGGCC)‐associated defects in c9FTD/ALS. Neuron 83: 1043–1050 · DOI
- Samaranch L, Lorenzo‐Betancor O, Arbelo JM, Ferrer I, Lorenzo E, Irigoyen J, Pastor MA, Marrero C, Isla C, Herrera‐Henriquez J et al (2010) PINK1‐linked parkinsonism is associated with Lewy body pathology. Brain 133: 1128–1142 · DOI
- Riley BE, Olzmann JA (2015) A polyubiquitin chain reaction: parkin recruitment to damaged mitochondria. PLoS Genet 11: e1004952 · DOI
- Lu W, Karuppagounder SS, Springer DA, Allen MD, Zheng L, Chao B, Zhang Y, Dawson VL, Dawson TM, Lenardo M (2014) Genetic deficiency of the mitochondrial protein PGAM5 causes a Parkinson's‐like movement disorder. Nat Commun 5: 4930 · DOI
- Imai Y, Kanao T, Sawada T, Kobayashi Y, Moriwaki Y, Ishida Y, Takeda K, Ichijo H, Lu B, Takahashi R (2010) The loss of PGAM5 suppresses the mitochondrial degeneration caused by inactivation of PINK1 in Drosophila. PLoS Genet 6: e1001229 · DOI
- Palikaras K, Tavernarakis N (2012) Mitophagy in neurodegeneration and aging. Front Genet 3: 297 · DOI
- Zhang YJ, Caulfield T, Xu YF, Gendron TF, Hubbard J, Stetler C, Sasaguri H, Whitelaw EC, Cai S, Lee WC et al (2013) The dual functions of the extreme N‐terminus of TDP‐43 in regulating its biological activity and inclusion formation. Hum Mol Genet 22: 3112–3122 · DOI
- Cai Q, Zakaria HM, Simone A, Sheng ZH (2012) Spatial parkin translocation and degradation of damaged mitochondria via mitophagy in live cortical neurons. Curr Biol 22: 545–552 · DOI
- Lin WL, Castanedes‐Casey M, Dickson DW (2009) Transactivation response DNA‐binding protein 43 microvasculopathy in frontotemporal degeneration and familial Lewy body disease. J Neuropathol Exp Neurol 68: 1167–1176 · DOI
- Weeks SD, Grasty KC, Hernandez‐Cuebas L, Loll PJ (2009) Crystal structures of Lys‐63‐linked tri‐ and di‐ubiquitin reveal a highly extended chain architecture. Proteins 77: 753–759 · DOI
- Zhang N, Wang Q, Ehlinger A, Randles L, Lary JW, Kang Y, Haririnia A, Storaska AJ, Cole JL, Fushman D et al (2009) Structure of the s5a:k48‐linked diubiquitin complex and its interactions with rpn13. Mol Cell 35: 280–290 · DOI
- Jacobson MP, Friesner RA, Xiang Z, Honig B (2002) On the role of the crystal environment in determining protein side‐chain conformations. J Mol Biol 320: 597–608 · DOI
- Krieger E, Joo K, Lee J, Raman S, Thompson J, Tyka M, Baker D, Karplus K (2009) Improving physical realism, stereochemistry, and side‐chain accuracy in homology modeling: four approaches that performed well in CASP8. Proteins 77(Suppl 9): 114–122 · DOI
- Laskowski RA, MacArthur MW, Moss DS, Thornton JM (1993) PROCHECK: a program to check the stereochemical quality of protein structures. J Appl Cryst 26: 283–291 · DOI · Paper page
- Joosten RP, Salzemann J, Bloch V, Stockinger H, Berglund AC, Blanchet C, Bongcam‐Rudloff E, Combet C, Da Costa AL, Deleage G et al (2009) PDB_REDO: automated re‐refinement of X‐ray structure models in the PDB. J Appl Crystallogr 42: 376–384 · DOI
- Krieger E, Nabuurs SB, Vriend G (2003) Homology modeling. Methods Biochem Anal 44: 509–523 · DOI
- Vriend G (1990) WHAT IF: a molecular modeling and drug design program. J Mol Graph 8: 52–56, 29 · DOI
- Caulfield TR, Devkota B, Rollins GC (2011) Examinations of tRNA Range of Motion Using Simulations of Cryo‐EM Microscopy and X‐Ray Data. J Biophys 2011: 219515
- Krieger E, Dunbrack RL Jr, Hooft RW, Krieger B (2012) Assignment of protonation states in proteins and ligands: combining pKa prediction with hydrogen bonding network optimization. Methods Mol Biol 819: 405–421 · DOI
- Schrödinger (2010) Maestro, version 9.1. New York, NY: Schrödinger, LLC
- Schrödinger (2012) Suite 2012. New York, NY: Schrödinger, LLC
- Schrödinger (2013) Biologics Suite: BioLuminate, version 1.1. New York, NY: Schrödinger, LLC
Cited by
Sorted by citations
Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition).
Klionsky, D. J., Abdelmohsen, K., Abe, A., Abedin, M. J., Abeliovich, H., Acevedo Arozena, A., Adachi, H., Adams, C. M., Adams, P. D., Adeli, K., et al. (2016) · Autophagy · doi:10.1080/15548627.2015.1100356 · Cited by 5,894
“have very recently been described as novel tools to detect the activation of PINK1-PARK2-mediated mitophagy.(744) p-S65-”
Self-citationGuidelines for the use and interpretation of assays for monitoring autophagy (4th edition) 1
Klionsky, D. J., Abdel-Aziz, A. K., Abdelfatah, S., Abdellatif, M., Abdoli, A., Abel, S., Abeliovich, H., Abildgaard, M. H., Abudu, Y. P., Acevedo-Arozena, A., et al. (2021) · Autophagy · doi:10.1080/15548627.2020.1797280 · Cited by 2,897
Self-citationSwatek, K. N., & Komander, D. (2016) · Cell Research · doi:10.1038/cr.2016.39 · Cited by 2,141
Deciphering the Molecular Signals of PINK1/Parkin Mitophagy
Nguyen, T. N., Padman, B. S., & Lazarou, M. (2016) · Trends in Cell Biology · doi:10.1016/j.tcb.2016.05.008 · Cited by 758
Building and decoding ubiquitin chains for mitophagy
Harper, J. W., Ordureau, A., & Heo, J. (2018) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm.2017.129 · Cited by 689
Metadata
- Authors
- Fiesel, F. C., Ando, M., Hudec, R., Hill, A. R., Castanedes‐Casey, M., Caulfield, T. R., Moussaud‐Lamodière, E. L., Stankowski, J. N., Bauer, P. O., Lorenzo‐Betancor, O., Ferrer, I., Arbelo, J. M., Siuda, J., Chen, L., Dawson, V. L., Dawson, T. M., Wszolek, Z. K., Ross, O. A., Dickson, D. W., & Springer, W.
- Affiliations
- Mayo Clinic (US)
- Hospital Universitario Insular de Gran Canaria (ES)
- Medical University of Silesia (PL)
- Johns Hopkins University (US)
- Corresponding author
- Springer, Wolfdieter
- ORCID
- Venue
- The EMBO Reports
- Published
- 2015-07-14
- Volume
- 16
- Issue
- 9
- Pages
- 1114-1130
- ISSN
- 1469-221X (ISSN-L)
- 1469-3178
- PMC
- PMC4576981
- OpenAlex
- W2102694693
- Cited by
- 185
- References
- 40
- Citations by year
- 2026: 15 · 2025: 16 · 2024: 14 · 2023: 16 · 2022: 19 · 2021: 19 · 2020: 22 · 2019: 15 · 2018: 14 · 2017: 17 · 2016: 15 · 2015: 3
- FWCI
- 11.52
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- EMBO Reports (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Acceda (Universidad de Las Palmas de Gran Canaria) (submittedVersion)
- Funders
- NIH/NINDS (R01NS085070, R01NS078086)
- Michael J. Fox Foundation for Parkinson's Research
- Foundation for Mitochondrial Medicine
- Mayo Clinic Foundation
- Center for Individualized Medicine
- Marriott Family Foundation
- Gerstner Family Career Development Award
- Morris K. Udall Parkinson's Disease Research Center of Excellence (NINDS P50 #NS072187)
- NIH/NINDS Udall Center (P50 NS38377, MDSCRF 2007‐MSCRFI‐0420‐00, 2009‐MSCRFII‐0125‐00, MDSCRF 2012‐MSCRFII‐0268‐00, MDSCRF 2013‐MSCRFII‐0105‐00)
- JPB Foundation
- The Uehara Memorial Foundation
- Mayo Clinic Center for Regenerative Medicine
- ALS Association
- Topics
- Health Sciences › Medicine › Clinical Neurology › Parkinson's Disease Mechanisms and Treatments
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Autophagy in Disease and Therapy
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Ubiquitin and proteasome pathways
- Keywords
- PINK1, ubiquitin phosphorylation, Parkin, Parkinson's disease, mitophagy, mitochondrial stress, E3 ubiquitin ligase, ubiquitin, aging, biomarkers, primary neurons
- MeSH terms
- PTEN-Induced Putative Kinase, Animals, Antibodies, Brain, Fibroblasts, HeLa Cells, Humans, Mitochondria, Mutation, Neurons, Parkinson Disease, Phosphorylation, Protein Kinases, Biomarkers, Ubiquitin, Ubiquitin-Protein Ligases, Mice, Ubiquitination, Mitophagy
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review