The DOI matches its Crossref record; 8 of the 8 references it cites were found in a registry or an index.
Profiling the HeLa S3 Transcriptome using Randomly Primed cDNA and Massively Parallel Short-Read Sequencing
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“Although a previous study of the HeLa transcriptome11 reported an enrichment of putative mutations in cell cycle- and E2F-related genes, subsequently generated population-scale datasets contain all variants we observed in these genes, suggesting they are inherited and benign rather than somatic and pathogenic.”
From The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line (2013) · cites this paper as [11]
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Cites
High-Resolution Profiling of Histone Methylations in the Human Genome
Barski, A., Cuddapah, S., Cui, K., Roh, T.-Y., Schones, D. E., Wang, Z., Wei, G., Chepelev, I., & Zhao, K. (2007) · Cell · doi:10.1016/j.cell.2007.05.009 · Cited by 6,845
The ENCODE Project Consortium (2007) · Nature · doi:10.1038/nature05874 · Cited by 5,223
A census of human cancer genes
Futreal, P. A., Coin, L., Marshall, M., Down, T., Hubbard, T., Wooster, R., Rahman, N., & Stratton, M. R. (2004) · Nature Reviews Cancer · doi:10.1038/nrc1299 · Cited by 3,184
Robertson, G., Hirst, M., Bainbridge, M., Bilenky, M., Zhao, Y., Zeng, T., Euskirchen, G., Bernier, B., Varhol, R., Delaney, A., et al. (2007) · Nature Methods · doi:10.1038/nmeth1068 · Cited by 1,454
Self-citationComplete sequencing and characterization of 21,243 full-length human cDNAs
Ota, T., Suzuki, Y., Nishikawa, T., Otsuki, T., Sugiyama, T., Irie, R., Wakamatsu, A., Hayashi, K., Sato, H., Nagai, K., et al. (2004) · Nature Genetics · doi:10.1038/ng1285 · Cited by 925
Using the transcriptome to annotate the genome
Saha, S., Sparks, A. B., Rago, C., Akmaev, V., Wang, C. J., Vogelstein, B., Kinzler, K. W., & Velculescu, V. E. (2002) · Nature Biotechnology · doi:10.1038/nbt0502-508 · Cited by 630
AceView: a comprehensive cDNA-supported gene and transcripts annotation
Thierry-Mieg, D., & Thierry-Mieg, J. (2006) · Genome Biology · doi:10.1186/gb-2006-7-s1-s12 · Cited by 629
Involvement of RB gene family in tumor angiogenesis
Gabellini, C., Del Bufalo, D., & Zupi, G. (2006) · Oncogene · doi:10.1038/sj.onc.1209631 · Cited by 47
Research works printed but not linked: 30
- 10.1038/ng1296-457 · DOI
- 10.1038/35057141 · DOI
- 10.1038/70487 · DOI
- 10.1016/S0168-1656(00)00258-3 · DOI
- 10.1126/science.1103388 · DOI
- 10.1126/science.1138341 · DOI
- 10.1016/j.tig.2006.07.003 · DOI
- 10.1073/pnas.2136655100 · DOI
- 10.1093/nar/gkm901 · DOI
- 10.1126/science.1090100 · DOI
- 10.1038/nmeth0208-118 · DOI
- 10.1038/10290 · DOI · Paper page
- 10.1101/gr.076166.108 · DOI
- 10.1101/gr.7179508 · DOI · Paper page
- 10.1093/nar/gkl996 · DOI
- 10.1002/em.20290 · DOI
- 10.1101/gr.4137606 · DOI
- 10.1093/nar/gkh067 · DOI
- 10.1126/science.1108625 · DOI
- 10.1016/j.jmb.2005.05.046 · DOI
- 10.1093/nar/gkm323 · DOI
- 10.1093/nar/gkj107 · DOI
- 10.1016/j.clinbiochem.2007.12.022 · DOI
- 10.1159/000087377 · DOI
- 10.1038/nature05610 · DOI
- 10.1126/science.1133427 · DOI
- 10.1038/nm1437 · DOI
- 10.1042/bj20011848 · DOI
- 10.1093/nar/29.13.2789 · DOI
- 10.1038/sj.onc.1209615 · DOI
Cited by
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
Li, B., & Dewey, C. N. (2011) · BMC Bioinformatics · doi:10.1186/1471-2105-12-323 · Cited by 22,179
RNA-Seq: a revolutionary tool for transcriptomics
Wang, Z., Gerstein, M., & Snyder, M. (2009) · Nature Reviews Genetics · doi:10.1038/nrg2484 · Cited by 13,174
An Integrated Genomic Analysis of Human Glioblastoma Multiforme
Parsons, D. W., Jones, S., Zhang, X., Lin, J. C.-H., Leary, R. J., Angenendt, P., Mankoo, P., Carter, H., Siu, I.-M., Gallia, G. L., et al. (2008) · Science · doi:10.1126/science.1164382 · Cited by 5,857
Self-citationCore Signaling Pathways in Human Pancreatic Cancers Revealed by Global Genomic Analyses
Jones, S., Zhang, X., Parsons, D. W., Lin, J. C.-H., Leary, R. J., Angenendt, P., Mankoo, P., Carter, H., Kamiyama, H., Jimeno, A., et al. (2008) · Science · doi:10.1126/science.1164368 · Cited by 3,969
Self-citationConserved role of intragenic DNA methylation in regulating alternative promoters
Maunakea, A. K., Nagarajan, R. P., Bilenky, M., Ballinger, T. J., D’Souza, C., Fouse, S. D., Johnson, B. E., Hong, C., Nielsen, C., Zhao, Y., et al. (2010) · Nature · doi:10.1038/nature09165 · Cited by 1,743
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Metadata
- Authors
- Morin, R. D., Bainbridge, M., Fejes, A., Hirst, M., Krzywinski, M., Pugh, T. J., McDonald, H., Varhol, R., Jones, S. J. M., & Marra, M. A.
- Venue
- BioTechniques
- Publisher
- Informa UK Limited
- Published
- 2008-07
- Volume
- 45
- Issue
- 1
- Pages
- 81-94
- ISSN
- 0736-6205
- 1940-9818
- Cited by
- 342
- References
- 8
- Language
- en
- Funders
- BC Cancer Foundation
- Genome British Columbia
- Western Diversification
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Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
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- CoChat. (2026). Citation check: Profiling the HeLa S3 Transcriptome using Randomly Primed cDNA and Massively Parallel Short-Read Sequencing. https://app.cochat.ai/papers/10.2144/000112900
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- Morin, R. D., Bainbridge, M., Fejes, A., Hirst, M., Krzywinski, M., Pugh, T. J., McDonald, H., Varhol, R., Jones, S. J. M., & Marra, M. A. (2008). Profiling the HeLa S3 Transcriptome using Randomly Primed cDNA and Massively Parallel Short-Read Sequencing. BioTechniques. https://doi.org/10.2144/000112900
