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Promiscuous Defluorinating Enoyl-CoA Hydratases/Hydrolases Allow for Complete Anaerobic Degradation of 2-Fluorobenzoate

Tiedt, Oliver, Mergelsberg, Mario, Eisenreich, Wolfgang, Boll, Matthias·2017·Frontiers in Microbiology
DOI 10.3389/fmicb.2017.02579PMC PMC5742626
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  1. Altenschmidt, 1991, Purification and characterization of benzoate-coenzyme A ligase and 2-aminobenzoate-coenzyme A ligases from a denitrifying Pseudomonas sp., J. Bacteriol., 173, 5494, 10.1128/jb.173.17.5494-5501.1991 · DOI
  2. Amann, 1988, Tightly regulated tac promoter vectors useful for the expression of unfused and fused proteins in Escherichia coli., Gene, 69, 301, 10.1016/0378-1119(88)90440-4 · DOI
  3. Anders, 1995, Taxonomic position of aromatic-degrading denitrifying pseudomonad strains K 172 and KB 740 and their description as new members of the genera Thauera, as Thauera aromatica sp. nov., and Azoarcus, as Azoarcus evansii sp. nov., respectively, members of the beta subclass of the Proteobacteria., Int. J. Syst. Bacteriol., 45, 327, 10.1099/00207713-45-2-327 · DOI
  4. Baker, 2012, Widespread genetic switches and toxicity resistance proteins for fluoride., Science, 335, 233, 10.1126/science.1215063 · DOI · Paper page
  5. Boll, 1995, Benzoyl-coenzyme a reductase (dearomatizing), a key enzyme of anaerobic aromatic metabolism. ATP dependence of the reaction, purification and some properties of the enzyme from Thauera aromatica strain K172., Eur. J. Biochem., 234, 921, 10.1111/j.1432-1033.1995.921_a.x · DOI
  6. Boll, 2000, Nonaromatic products from anoxic conversion of benzoyl-CoA with benzoyl-CoA reductase and cyclohexa-1,5-diene-1-carbonyl-CoA hydratase., J. Biol. Chem., 275, 21889, 10.1074/jbc.M001833200 · DOI
  7. Cooper, 2015, Anaerobic microbial transformation of halogenated aromatics and fate prediction using electron density modeling., Environ. Sci. Technol., 49, 6018, 10.1021/acs.est.5b00303 · DOI
  8. Egland, 2001, Reductive, coenzyme A-mediated pathway for 3-chlorobenzoate degradation in the phototrophic bacterium Rhodopseudomonas palustris., Appl. Environ. Microbiol., 67, 1396, 10.1128/AEM.67.3.1396-1399.2001 · DOI
  9. Erb, 2007, Synthesis of C5-dicarboxylic acids from C2-units involving crotonyl-CoA carboxylase/reductase: the ethylmalonyl-CoA pathway., Proc. Natl. Acad. Sci. U.S.A., 104, 10631, 10.1073/pnas.0702791104 · DOI
  10. Holliger, 1994, Reductive dehalogenation as a respiratory process., Antonie Van Leeuwenhoek, 66, 239, 10.1007/BF00871642 · DOI
  11. Hug, 2013, Overview of organohalide-respiring bacteria and a proposal for a classification system for reductive dehalogenases., Philos. Trans. R. Soc. B Biol. Sci., 368, 10.1098/rstb.2012.0322 · DOI · Paper page
  12. Juárez, 2013, Characterization of the mbd cluster encoding the anaerobic 3-methylbenzoyl-CoA central pathway., Environ. Microbiol., 15, 148, 10.1111/j.1462-2920.2012.02818.x · DOI
  13. Jugder, 2016, Organohalide respiring bacteria and reductive dehalogenases: key tools in organohalide bioremediation., Front. Microbiol., 7, 10.3389/fmicb.2016.00249 · DOI
  14. Key, 1997, Fluorinated organics in the biosphere., Environ. Sci. Technol., 31, 2445, 10.1021/es961007c · DOI · Paper page
  15. Kiel, 2015, The biodegradation vs. biotransformation of fluorosubstituted aromatics., Appl. Microbiol. Biotechnol., 99, 7433, 10.1007/s00253-015-6817-5 · DOI · Paper page
  16. Kovach, 1995, Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes., Gene, 166, 175, 10.1016/0378-1119(95)00584-1 · DOI
  17. Kun, 1977, Enzymatic formation of glutathione-citryl thioester by a mitochondrial system and its inhibition by (-) erythrofluorocitrate., Proc. Natl. Acad. Sci. U.S.A., 74, 4942, 10.1073/pnas.74.11.4942 · DOI
  18. Kuntze, 2011, Enzymes involved in the anaerobic degradation of meta-substituted halobenzoates., Mol. Microbiol., 82, 758, 10.1111/j.1365-2958.2011.07856.x · DOI
  19. Kuntze, 2008, 6-Oxocyclohex-1-ene-1-carbonyl-coenzyme A hydrolases from obligately anaerobic bacteria: characterization and identification of its gene as a functional marker for aromatic compounds degrading anaerobes., Environ. Microbiol., 10, 1547, 10.1111/j.1462-2920.2008.01570.x · DOI
  20. Laempe, 1998, Cyclohexa-1,5-diene-1-carboxyl-CoA hydratase, an enzyme involved in anaerobic metabolism of benzoyl-CoA in the denitrifying bacterium Thauera aromatica., Eur. J. Biochem., 255, 618, 10.1046/j.1432-1327.1998.2550618.x · DOI
  21. Laempe, 2001, Anaerobic metabolism of 3-hydroxybenzoate by the denitrifying bacterium Thauera aromatica., J. Bacteriol., 183, 968, 10.1128/JB.183.3.968-979.2001 · DOI
  22. Laempe, 1999, 6-Hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase and 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, enzymes of the benzoyl-CoA pathway of anaerobic aromatic metabolism in the denitrifying bacterium Thauera aromatica., Eur. J. Biochem., 263, 420, 10.1046/j.1432-1327.1999.00504.x · DOI
  23. Lahme, 2012, Anaerobic degradation of 4-methylbenzoate via a specific 4-methylbenzoyl-CoA pathway., Environ. Microbiol., 14, 1118, 10.1111/j.1462-2920.2011.02693.x · DOI
  24. Lauble, 1996, The reaction of fluorocitrate with aconitase and the crystal structure of the enzyme-inhibitor complex., Proc. Natl. Acad. Sci. U.S.A., 93, 13699, 10.1073/pnas.93.24.13699 · DOI
  25. Marletta, 1982, Stereochemical studies on the hydration of monofluorofumarate and 2,3-difluorofumarate by fumarase., Biochemistry, 21, 2637, 10.1021/bi00540a010 · DOI
  26. Mechichi, 2002, Phylogenetic and metabolic diversity of bacteria degrading aromatic compounds under denitrifying conditions, and description of Thauera phenylacetica sp. nov., Thauera aminoaromatica sp. nov., and Azoarcus buckelii sp. nov., Arch. Microbiol., 178, 26, 10.1007/s00203-002-0422-6 · DOI
  27. Möbitz, 2002, A birch-like mechanism in enzymatic benzoyl-CoA reduction: a kinetic study of substrate analogues combined with an ab initio model., Biochemistry, 41, 1752, 10.1021/bi0113770 · DOI
  28. Murphy, 2009, Metabolism of fluoroorganic compounds in microorganisms: impacts for the environment and the production of fine chemicals., Appl. Microbiol. Biotechnol., 84, 617, 10.1007/s00253-009-2127-0 · DOI
  29. Murphy, 2008, Degradation of fluorobiphenyl by Pseudomonas pseudoalcaligenes KF707., FEMS Microbiol. Lett., 286, 45, 10.1111/j.1574-6968.2008.01243.x · DOI
  30. Natarajan, 2005, Microbial cleavage of CF bond., J. Fluor. Chem., 126, 424, 10.1016/j.jfluchem.2004.12.001 · DOI
  31. Park, 2001, Metabolism of fluorine-containing drugs., Annu. Rev. Pharmacol. Toxicol., 41, 443, 10.1146/annurev.pharmtox.41.1.443 · DOI
  32. Peters, 2004, Selenocysteine-containing proteins in anaerobic benzoate metabolism of Desulfococcus multivorans., J. Bacteriol., 186, 2156, 10.1128/JB.186.7.2156-2163.2004 · DOI
  33. Peters, 2007, Cyclohexa-1,5-diene-1-carbonyl-coenzyme A (CoA) hydratases of Geobacter metallireducens and Syntrophus aciditrophicus: evidence for a common benzoyl-CoA degradation pathway in facultative and strict anaerobes., J. Bacteriol., 189, 1055, 10.1128/JB.01467-06 · DOI
  34. Peters, 2003, Definition of the Escherichia coli MC4100 genome by use of a DNA array., J. Bacteriol., 185, 2017, 10.1128/JB.185.6.2017-2021.2003 · DOI
  35. Peters, 1953, Biochemistry of fluoroacetate poisoning the isolation and some properties of the fluorotricarboxylic acid inhibitor of citrate metabolism., Proc. R. Soc. Lond. B Biol. Sci., 140, 497, 10.1098/rspb.1953.0004 · DOI
  36. Pfennig, 1978, Rhodocyclus purpureus gen. nov. and sp. nov., a ring-shaped, vitamin B12-requiring member of the family Rhodospirillaceae., Int. J. Syst. Evol. Microbiol., 28, 283, 10.1099/00207713-28-2-283 · DOI
  37. Purser, 2008, Fluorine in medicinal chemistry., Chem. Soc. Rev., 37, 320, 10.1039/b610213c · DOI
  38. Schachter, 1953, Benzoyl-CoA and hippurate synthesis., J. Biol. Chem., 203, 925, 10.1016/S0021-9258(19)52362-6 · DOI
  39. Schennen, 1985, Anaerobic degradation of 2-fluorobenzoate by benzoate-degrading, denitrifying bacteria., J. Bacteriol., 161, 321, 10.1128/JB.161.1.321-325.1985 · DOI
  40. Seppelt, 1977, Trifluoromethanol, CF3OH., Angew. Chem. Int. Ed. Engl., 16, 322, 10.1002/anie.197703221 · DOI
  41. Smart, 2001, Fluorine substituent effects (on bioactivity)., J. Fluor. Chem., 109, 3, 10.1016/S0022-1139(01)00375-X · DOI
  42. Song, 2000, Isolation and characterization of diverse halobenzoate-degrading denitrifying bacteria from soils and sediments., Appl. Environ. Microbiol., 66, 3446, 10.1128/AEM.66.8.3446-3453.2000 · DOI
  43. Teipel, 1968, The substrate specificity of fumarase., J. Biol. Chem., 243, 5684, 10.1016/S0021-9258(18)91921-6 · DOI
  44. Thiele, Mechanism of enzymatic birch reduction: stereochemical course and exchange reactions of benzoyl-CoA reductase., J. Am. Chem. Soc., 130, 14050, 10.1021/ja805091w · DOI
  45. Thiele, Aromatizing cyclohexa-1,5-diene-1-carbonyl-coenzyme A oxidase., J. Biol. Chem., 283, 20713, 10.1074/jbc.M802841200 · DOI
  46. Tiedt, 2016, ATP-dependent C–F bond cleavage allows the complete degradation of 4-fluoroaromatics without oxygen., mBio, 7, 10.1128/mBio.00990-16 · DOI · Paper page
  47. Tschech, 1984, Growth yield increase linked to caffeate reduction in Acetobacterium woodii., Arch. Microbiol., 137, 163, 10.1007/bf00414460 · DOI
  48. Weinstein, 2005, Fluorides in the Environment: Effects on Plants and Animals.
  49. Wischgoll, 2005, Gene clusters involved in anaerobic benzoate degradation of Geobacter metallireducens., Mol. Microbiol., 58, 1238, 10.1111/j.1365-2958.2005.04909.x · DOI · Paper page
  50. Zhang, 2012, “Biology of fluoro-organic compounds,” in, Fluorous Chemistry, 365

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Metadata

Authors
Tiedt, O., Mergelsberg, M., Eisenreich, W., & Boll, M.
Venue
Frontiers in Microbiology
Publisher
Frontiers Media SA
Published
2017-12-21
Volume
8
ISSN
1664-302X
DOI
10.3389/fmicb.2017.02579
PMC
PMC5742626
Cited by
32
References
1
Funders
Deutsche Forschungsgemeinschaft (BO 1565 11/2 and 14/1)

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