Cited by 66

The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.

Leveraging Pseudomonas Stress Response Mechanisms for Industrial Applications

Craig, Kelly, Johnson, Brant R., Grunden, Amy·2021·Frontiers in Microbiology

Abstract

Members of the genus Pseudomonas are metabolically versatile and capable of adapting to a wide variety of environments. Stress physiology of Pseudomonas strains has been extensively studied because of their biotechnological potential in agriculture as well as their medical importance with regards to pathogenicity and antibiotic resistance. This versatility and scientific relevance led to a substantial amount of information regarding the stress response of a diverse set of species such as Pseudomonas chlororaphis , P. fluorescens , P. putida , P. aeruginosa , and P. syringae . In this review, environmental and industrial stressors including desiccation, heat, and cold stress, are cataloged along with their corresponding mechanisms of survival in Pseudomonas . Mechanisms of survival are grouped by the type of inducing stress with a focus on adaptations such as synthesis of protective substances, biofilm formation, entering a non-culturable state, enlisting chaperones, transcription and translation regulation, and altering membrane composition. The strategies Pseudomonas strains utilize for survival can be leveraged during the development of beneficial strains to increase viability and product efficacy.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.3389/fmicb.2021.660134

Cites

2 of 2 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Flagged first, then by citations

Show all 2 references

Research works printed but not linked: 162

  1. Aiello, 2019, Postharvest biocontrol ability of Pseudomonas synxantha against Monilinia fructicola and Monilinia fructigena on stone fruit., Postharv. Biol. Technol., 149, 83, 10.1016/j.postharvbio.2018.11.020 · DOI
  2. Alderson, 2016, Dynamical structures of Hsp70 and Hsp70-Hsp40 complexes., Structure, 24, 1014, 10.1016/j.str.2016.05.011 · DOI
  3. Ali, 2013, Isolation and characterization of drought-tolerant ACC deaminase and exopolysaccharide-producing fluorescent Pseudomonas sp., Ann. Microbiol., 64, 493, 10.1007/s13213-013-0680-3 · DOI
  4. Alix, 2006, “The Work of Chaperones,” in, Protein Synthesis and Ribosome Structure, 10.1002/3527603433.ch13 · DOI
  5. Anderson, 2018, Biopesticides produced by plant-probiotic Pseudomonas chlororaphis isolates., Crop Protect., 105, 62, 10.1016/j.cropro.2017.11.009 · DOI
  6. Anderson, 2018, Safety of Pseudomonas chlororaphis as a gene source for genetically modified crops., Transgenic Res., 27, 103, 10.1007/s11248-018-0061-6 · DOI · Paper page
  7. Anekella, 2013, Optimization of microencapsulation of probiotics in raspberry juice by spray drying., Food Sci. Technol., 50, 17, 10.1016/j.lwt.2012.08.003 · DOI
  8. Aramaki, 2001, Transcription analysis of rpoH in Pseudomonas putida., FEMS Microbiol. Lett., 205, 165, 10.1111/j.1574-6968.2001.tb10942.x · DOI
  9. Arana, 2010, Effect of temperature and starvation upon survival strategies of Pseudomonas fluorescens CHA0: Comparison with Escherichia coli., FEMS Microbiol. Ecol., 74, 500, 10.1111/j.1574-6941.2010.00979.x · DOI
  10. Ayrapetyan, 2018, Relationship between the viable but nonculturable state and antibiotic persister cells., J. Bacteriol., 200, 10.1128/jb.00249-18 · DOI
  11. Bashan, 2014, Advances in plant growth-promoting bacterial inoculant technology: Formulations and practical perspectives (1998–2013)., Plant Soil, 378, 1, 10.1007/s11104-013-1956-x · DOI
  12. Bédard, 2014, Recovery of Pseudomonas aeruginosa culturability following copper- and chlorine-induced stress., FEMS Microbiol. Lett., 356, 226, 10.1111/1574-6968.12494 · DOI
  13. Berger, 1997, capA, a cspA-like gene that encodes a cold acclimation protein in the psychrotrophic bacterium arthrobacter globiformis SI55., J. Bacteriol., 179, 5670, 10.1128/JB.179.18.5670-5676.1997 · DOI
  14. Berninger, 2018, Maintenance and assessment of cell viability in formulation of non-sporulating bacterial inoculants., Microbial Biotechnol., 11, 277, 10.1111/1751-7915.12880 · DOI
  15. Billi, 2000, Engineering desiccation tolerance in Escherichia coli., Appl. Environ. Microbiol., 66, 1680, 10.1128/AEM.66.4.1680-1684.2000 · DOI · Paper page
  16. Bittner, 2016, Mini review: ATP−dependent proteases in bacteria., Biopolymers, 105, 505, 10.1002/bip.22831 · DOI
  17. Boes, 2008, SpoT-triggered stringent response controls usp gene expression in Pseudomonas aeruginosa., J. Bacteriol., 190, 7189, 10.1128/jb.00600-08 · DOI
  18. Brown, 2004, Inorganic polyphosphate in the origin and survival of species., PNAS, 101, 16085, 10.1073/pnas.0406909101 · DOI · Paper page
  19. Bruijn, 2009, Regulation of cyclic lipopeptide biosynthesis in Pseudomonas fluorescens by the ClpP protease., J. Bacteriol., 191, 1910, 10.1128/JB.01558-08 · DOI
  20. Byrd, 2009, Genetic and biochemical analyses of the Pseudomonas aeruginosa psl exopolysaccharide reveal overlapping roles for polysaccharide synthesis enzymes in psl and LPS production., Mol. Microbiol., 73, 622, 10.1111/j.1365-2958.2009.06795.x · DOI
  21. Cabrefiga, 2014, Improvement of a dry formulation of Pseudomonas fluorescens EPS62e for fire blight disease biocontrol by combination of culture osmoadaptation with a freeze-drying lyoprotectant., J. Appl. Microbiol., 117, 1122, 10.1111/jam.12582 · DOI
  22. Cagliero, 2013, Dissociation and re-association of RNA polymerase with DNA during osmotic stress response in Escherichia coli., Nucleic Acids Res., 41, 315, 10.1093/nar/gks988 · DOI
  23. Cao-Hoang, 2008, Rates of chilling to 0°C: Implications for the survival of microorganisms and relationship with membrane fluidity modifications., Appl. Microbiol. Biotechnol., 77, 1379, 10.1007/s00253-007-1279-z · DOI
  24. Cebrián, 2017, Physiology of the inactivation of vegetative bacteria by thermal treatments: Mode of action, influence of environmental factors and inactivation kinetics., Foods, 6, 10.3390/foods6120107 · DOI
  25. Champagne, 1991, The freeze-drying of lactic acid bacteria. A review., Can. Instit. Food Sci. Technol. J., 24, 118, 10.1016/S0315-5463(91)70034-5 · DOI
  26. Chan, 2016, Transcriptome analysis of Pseudomonas aeruginosa PAO1 grown at both body and elevated temperatures., PeerJ, 4, 10.7717/peerj.2223 · DOI
  27. Chang, 2007, Alginate production by Pseudomonas putida creates a hydrated microenvironment and contributes to biofilm architecture and stress tolerance under water-limiting conditions., J. Bacteriol., 189, 8290, 10.1128/jb.00727-07 · DOI
  28. Chin-A-Woeng, 2003, Phenazines and their role in biocontrol by Pseudomonas bacteria., N. Phytol., 157, 503, 10.1046/j.1469-8137.2003.00686.x · DOI
  29. Chong, 2017, Microbial production of rhamnolipids: Opportunities, challenges and strategies., Microb. Cell Factor., 16, 137, 10.1186/s12934-017-0753-2 · DOI
  30. Chrzanowski, 2012, Why do microorganisms produce rhamnolipids?, World J. Microbiol. Biotechnol., 28, 401, 10.1007/s11274-011-0854-8 · DOI
  31. Cid, 2016, Properties and biotechnological applications of ice-binding proteins in bacteria., FEMS Microbiol. Lett., 363, 10.1093/femsle/fnw099 · DOI
  32. Clarke, 2003, Development of a diagnostic PCR assay that targets a heat-shock protein gene (groES) for detection of Pseudomonas spp. in cystic fibrosis patients., J. Med. Microbiol., 52, 759, 10.1099/jmm.0.05077-0 · DOI
  33. Collin, 2009, Bacterial sensing and signaling., 10.1159/isbn.978-3-8055-9133-1 · DOI
  34. Davis, 2014, Enumeration of probiotic strains: Review of culture-dependent and alternative techniques to quantify viable bacteria., J. Microbiol. Methods, 103, 9, 10.1016/j.mimet.2014.04.012 · DOI
  35. De Maayer, 2014, Some like it cold: Understanding the survival strategies of psychrophiles., EMBO Rep., 15, 508, 10.1002/embr.201338170 · DOI
  36. Díaz-Salazar, 2017, The stringent response promotes biofilm dispersal in Pseudomonas putida., Sci. Rep., 7, 18055, 10.1038/s41598-017-18518-0 · DOI
  37. Dubern, 2005, The heat shock genes dnaK, dnaJ, and grpE are involved in regulation of putisolvin biosynthesis in Pseudomonas putida PCL1445., J. Bacteriol., 187, 5967, 10.1128/JB.187.17.5967-5976.2005 · DOI
  38. Dziewit, 2013, Sequence determination and analysis of three plasmids of Pseudomonas sp. GLE121, a psychrophile isolated from surface ice of ecology glacier (antarctica)., Plasmid, 70, 254, 10.1016/j.plasmid.2013.05.007 · DOI
  39. Eheth, 2019, Less effect of wells physicochemical properties on the antimicrobial susceptibility Pseudomonas aeruginosa isolated in equatorial region of central Africa., Appl. Water Sci., 9, 1, 10.1007/s13201-019-0909-9 · DOI
  40. Errampalli, 2006, Biological and integrated control of postharvest blue mold (Penicillium expansum) of apples by Pseudomonas syringae and cyprodinil., Biol. Contr., 36, 49, 10.1016/j.biocontrol.2005.07.011 · DOI
  41. Esbelin, 2018, Desiccation: An environmental and food industry stress that bacteria commonly face., Food Microbiol., 69, 82, 10.1016/j.fm.2017.07.017 · DOI
  42. Fellows, 2009, Freeze drying and freeze concentration, 1
  43. Flemming, 2007, The EPS matrix: The “house of biofilm cells”., J. Bacteriol., 189, 7945, 10.1128/jb.00858-07 · DOI
  44. Folkesson, 2012, Adaptation of Pseudomonas aeruginosa to the cystic fibrosis airway: An evolutionary perspective., Nat. Rev. Microbiol., 10, 841, 10.1038/nrmicro2907 · DOI
  45. Frank, 2011, Functional genomics of the initial phase of cold adaptation of Pseudomonas putida KT2440., FEMS Microbiol. Lett., 318, 47, 10.1111/j.1574-6968.2011.02237.x · DOI
  46. Freeman, 2010, Identification of the trehalose biosynthetic loci of Pseudomonas syringae and their contribution to fitness in the phyllosphere., Environ. Microbiol., 12, 1486, 10.1111/j.1462-2920.2010.02171.x · DOI
  47. Freeman, 2013, Physiological and transcriptional responses to osmotic stress of two Pseudomonas syringae strains that differ in epiphytic fitness and osmotolerance., J. Bacteriol., 195, 4742, 10.1128/JB.00787-13 · DOI
  48. Fujita, 1998, Transcription of the groESL operon in Pseudomonas aeruginosa PAO1., FEMS Microbiol. Lett., 163, 237, 10.1016/S0378-1097(98)00174-8 · DOI
  49. Garba, 2016, Molecular cloning and functional expression of a Δ9- fatty acid desaturase from an Antarctic Pseudomonas sp., A3. PLoS One, 11, 10.1371/journal.pone.0160681 · DOI
  50. Garba, 2018, Homology modeling and docking studies of a Δ9-fatty acid desaturase from a cold-tolerant Pseudomonas sp. AMS8., PeerJ, 6, 10.7717/peerj.4347 · DOI
  51. Georgescauld, 2014, GroEL/ES chaperonin modulates the mechanism and accelerates the rate of TIM-barrel domain folding., Cell, 157, 922, 10.1016/j.cell.2014.03.038 · DOI
  52. Gomila, 2015, Phylogenomics and systematics in Pseudomonas., Front. Microbiol., 6, 214, 10.3389/fmicb.2015.00214 · DOI
  53. Gray, 2014, Oxidative stress protection by polyphosphate - new roles for an old player., Curr. Opin. Microbiol., 24, 1, 10.1016/j.mib.2014.12.004 · DOI
  54. Gulez, 2014, Colony morphology and transcriptome profiling of Pseudomonas putida KT2440 and its mutants deficient in alginate or all EPS synthesis under controlled matric potentials., MicrobiologyOpen, 3, 457, 10.1002/mbo3.180 · DOI
  55. Hadi, 2009, Biofilm removal by medical device cleaners: Comparison of two bioreactor detection assays., J. Hospit. Infect., 74, 160, 10.1016/j.jhin.2009.10.023 · DOI
  56. Hall, 2017, Two isoforms of clp peptidase in Pseudomonas aeruginosa control distinct aspects of cellular physiology., J. Bacteriol., 199, 10.1128/jb.00568-16 · DOI
  57. Han, 2019, Clinical characteristics and drug tolerance for Pseudomonas aeruginosa infection in patients with agranulocytosis and fever in shanghai., Eur. J. Inflamm., 17, 10.1177/2058739218824946 · DOI
  58. Heipieper, 2003, The cis–trans isomerase of unsaturated fatty acids in Pseudomonas and vibrio: Biochemistry, molecular biology and physiological function of a unique stress adaptive mechanism., 10.1016/S0378-1097(03)00792-4 · DOI · Paper page
  59. Hentzer, 2001, Alginate overproduction affects Pseudomonas aeruginosa biofilm structure and function., J. Bacteriol., 183, 5395, 10.1128/jb.183.18.5395-5401.2001 · DOI
  60. Huang, 2015, Global semi-arid climate change over last 60 years., Clim. Dynamics, 46, 1131, 10.1007/s00382-015-2636-8 · DOI
  61. Huang, 2018, Pyrrolnitrin is more essential than phenazines for Pseudomonas chlororaphis G05 in its suppression of fusarium graminearum., Microbiol. Res., 215, 55, 10.1016/j.micres.2018.06.008 · DOI
  62. Huq, 2013, Encapsulation of probiotic bacteria in biopolymeric system., Crit. Rev. Food Sci. Nutrit., 53, 909, 10.1080/10408398.2011.573152 · DOI
  63. Ito, 2014, Genetic and phenotypic characterization of the heat shock response in Pseudomonas putida., MicrobiologyOpen, 3, 922, 10.1002/mbo3.217 · DOI
  64. Jain, 2009, Effect of trehalose on protein structure., Protein Sci., 18, 24, 10.1002/pro.3 · DOI
  65. Kadmiri, 2020, Bioformulation of microbial fertilizer based on clay and alginate encapsulation., Curr. Microbiol., 78, 86, 10.1007/s00284-020-02262-2 · DOI
  66. Kawahara, 2001, Relationship between antifreeze protein and freezing resistance in Pseudomonas putida GR12-2., Curr. Microbiol., 43, 365, 10.1007/s002840010317 · DOI
  67. Kawahara, 2004, Production of two types of ice crystal-controlling proteins in antarctic bacterium., J. Biosci. Bioengine., 98, 220, 10.1016/S1389-1723(04)00271-3 · DOI
  68. Khakimova, 2013, The stringent response controls catalases in Pseudomonas aeruginosa and is required for hydrogen peroxide and antibiotic tolerance., J. Bacteriol., 195, 2011, 10.1128/jb.02061-12 · DOI
  69. Khan, 2003, Characterization and localization of fluorescent Pseudomonas cold shock protein(s) by monospecific polyclonal antibodies., Microbiol. Immunol., 47, 895, 10.1111/j.1348-0421.2003.tb03456.x · DOI
  70. Kirstein, 2009, Adapting the machine: Adaptor proteins for Hsp100/Clp and AAA+ proteases., Nat. Rev. Microbiol., 7, 589, 10.1038/nrmicro2185 · DOI
  71. Klinkert, 2009, Microbial thermosensors., Cell. Mol. Life Sci., 66, 2661, 10.1007/s00018-009-0041-3 · DOI
  72. Krajewski, 2013, Short ROSE-like RNA thermometers control IbpA synthesis in Pseudomonas species., PLoS One, 8, 10.1371/journal.pone.0065168 · DOI
  73. Kuhn, 2012, Toward understanding life under subzero conditions: The significance of exploring psychrophilic “Cold-shock” proteins., Astrobiology, 12, 178, 10.1089/ast.2012.0858 · DOI
  74. Kumar, 2020, Psychrophilic Pseudomonas helmanticensis proteome under simulated cold stress., Cell Stress Chaperones, 25, 1025, 10.1007/s12192-020-01139-4 · DOI
  75. Kurz, 2010, Genome-driven investigation of compatible solute biosynthesis pathways of Pseudomonas syringae pv. syringae and their contribution to water stress tolerance., Appl. Environ. Microbiol., 76, 5452, 10.1128/AEM.00686-10 · DOI
  76. Laue, 2006, Contribution of alginate and levan production to biofilm formation by Pseudomonas syringae., Microbiology, 152, 2909, 10.1099/mic.0.28875-0 · DOI
  77. Lawless, 2014, “Analysis of Chaperone Network Throughput,” in, The Molecular Chaperones Interaction Networks in Protein Folding and Degradation. Interactomics and Systems Biology
  78. Lebre, 2017, Xerotolerant bacteria: Surviving through a dry spell., Nat. Rev. Microbiol., 15, 285, 10.1038/nrmicro.2017.16 · DOI
  79. Lee, 2017, Complete genome sequence of Pseudomonas antarctica PAMC 27494, a bacteriocin-producing psychrophile isolated from antarctica., J. Biotechnol., 259, 15, 10.1016/j.jbiotec.2017.08.013 · DOI
  80. Lee, 2005, Cloning and expression of a trehalose synthase from Pseudomonas stutzeri CJ38 in Escherichia coli for the production of trehalose., Appl. Microbiol. Biotechnol., 68, 213, 10.1007/s00253-004-1862-5 · DOI
  81. Li, 2014, The importance of the viable but non-culturable state in human bacterial pathogens., Front. Microbiol., 5, 258, 10.3389/fmicb.2014.00258 · DOI
  82. Liu, 2018, The antioxidative function of alpha-ketoglutarate and its applications., BioMed Res. Int., 2018, 1, 10.1155/2018/3408467 · DOI
  83. Lopez, 2010, biofilms., Cold Spring Harb. Perspect. Biol., 2, 10.1101/cshperspect.a000398 · DOI
  84. Lowder, 2000, Effect of starvation and the viable-but-nonculturable state on green fluorescent protein (GFP) fluorescence in GFP-tagged Pseudomonas fluorescens A506., Appl. Environ. Microbiol., 66, 3160, 10.1128/aem.66.8.3160-3165.2000 · DOI
  85. Ma, 2012, The roles of biofilm matrix polysaccharide psl in mucoid Pseudomonas aeruginosa biofilms., FEMS Immunol. Med. Microbiol., 65, 377, 10.1111/j.1574-695X.2012.00934.x · DOI
  86. Mailloux, 2009, α-ketoglutarate dehydrogenase and glutamate dehydrogenase work in tandem to modulate the antioxidant α-ketoglutarate during oxidative stress in Pseudomonas fluorescens., J. Bacteriol., 191, 3804, 10.1128/JB.00046-09 · DOI
  87. Manaia, 2002, Pseudomonas thermotolerans sp. nov., a thermotolerant species of the genus Pseudomonas sensu stricto., Int. J. Systemat. Evolut. Microbiol., 52, 2203, 10.1099/00207713-52-6-2203 · DOI
  88. Mann, 2012, Pseudomonas biofilm matrix composition and niche biology., FEMS Microbiol. Rev., 36, 893, 10.1111/j.1574-6976.2011.00322.x · DOI
  89. Manuel, 2011, Repression of the antifungal activity of Pseudomonas sp. strain DF41 by the stringent response., Appl. Environ. Microbiol., 77, 5635, 10.1128/AEM.02875-10 · DOI
  90. Manuel, 2012, Stringent response mutants of Pseudomonas chlororaphis PA23 exhibit enhanced antifungal activity against Sclerotinia sclerotiorum in vitro., Microbiology, 158, 207, 10.1099/mic.0.053082-0 · DOI
  91. Marchand, 2009, Seasonal influence on heat-resistant proteolytic capacity of Pseudomonas lundensis and Pseudomonas fragi, predominant milk spoilers isolated from Belgian raw milk samples., Environ. Microbiol., 11, 467, 10.1111/j.1462-2920.2008.01785.x · DOI
  92. Marshall, 2019, Alginate genes are required for optimal soil colonization and persistence by Pseudomonas fluorescens Pf0-1., Access Microbiol., 1, 10.1099/acmi.0.000021 · DOI
  93. Mayer, 2000, Molecular basis for interactions of the DnaK chaperone with substrates., Biol. Chem., 381, 10.1515/BC.2000.109 · DOI
  94. Mensink, 2017, How sugars protect proteins in the solid state and during drying (review): Mechanisms of stabilization in relation to stress conditions., Eur. J. Pharmaceut. Biopharmaceut., 114, 288, 10.1016/j.ejpb.2017.01.024 · DOI
  95. Meyer, 2011, Proteolysis in the Escherichia coli heat shock response: A player at many levels., Curr. Opin. Microbiol., 14, 194, 10.1016/j.mib.2011.02.001 · DOI
  96. Mikkat, 2000, Salt adaptation in pseudomonads: Characterization of glucosylglycerol-synthesizing isolates from brackish coastal waters and the rhizosphere., Syst. Appl. Microbiol., 23, 31, 10.1016/s0723-2020(00)80043-0 · DOI
  97. Morris, 2008, The life history of the plant pathogen Pseudomonas syringae is linked to the water cycle., ISME J., 2, 321, 10.1038/ismej.2007.113 · DOI
  98. Muryoi, 2004, Cloning and expression of afpA, a gene encoding an antifreeze protein from the arctic plant growth-promoting rhizobacterium Pseudomonas putida GR12-2., J. Bacteriol., 186, 5661, 10.1128/jb.186.17.5661-5671.2004 · DOI
  99. Nakahigashi, 1998, Regulatory conservation and divergence of ς32 homologs from gram-negative bacteria: Serratia marcescens, proteus mirabilis, Pseudomonas aeruginosa, and agrobacterium tumefaciens., J. Bacteriol., 180, 2402, 10.1128/JB.180.9.2402-2408.1998 · DOI
  100. Nakaminami, 2006, Functional conservation of cold shock domains in bacteria and higher plants., PNAS, 103, 10122, 10.1073/pnas.0603168103 · DOI
  101. Narberhaus, 2010, Translational control of bacterial heat shock and virulence genes by temperature-sensing mRNAs., RNA Biol., 7, 84, 10.4161/rna.7.1.10501 · DOI
  102. Nikel, 2013, Accumulation of inorganic polyphosphate enables stress endurance and catalytic vigour in Pseudomonas putida KT2440., Microbial Cell Factor., 12, 10.1186/1475-2859-12-50 · DOI
  103. Nocker, 2001, ROSE elements occur in disparate rhizobia and are functionally interchangeable between species., Arch. Microbiol., 176, 44, 10.1007/s002030100294 · DOI
  104. Noll, 2019, Evaluating temperature-induced regulation of a ROSE-like RNA-thermometer for heterologous rhamnolipid production in Pseudomonas putida KT2440., AMB Express, 9, 1, 10.1186/s13568-019-0883-5 · DOI
  105. Ogura, 2001, AAA+ superfamily ATPases: Common structure-diverse function., Genes Cells Devoted Mol. Cell. Mechanis., 6, 575, 10.1046/j.1365-2443.2001.00447.x · DOI
  106. Otero-Asman, 2019, Diversity of extracytoplasmic function sigma (σ ECF) factor−dependent signaling in Pseudomonas., Mol. Microbiol., 112, 356, 10.1111/mmi.14331 · DOI
  107. Panicker, 2010, Occurrence and distribution of capB in Antarctic microorganisms and study of its structure and regulation in the Antarctic biodegradative Pseudomonas sp. 30/3., Extremophiles, 14, 171, 10.1007/s00792-009-0296-5 · DOI
  108. Park, 2007, Toluene−induced accumulation of trehalose by Pseudomonas sp. BCNU 106 through the expression of otsA and otsB homologues., Lett. Appl. Microbiol., 44, 50, 10.1111/j.1472-765X.2006.02036.x · DOI
  109. Parte, 2018, LPSN — List of Prokaryotic names with Standing in Nomenclature (bacterio.net), 20 years on., Int. J. Systemat. Evolution. Microbiol., 68, 1825, 10.1099/ijsem.0.002786 · DOI
  110. Pazos-Rojas, 2019, Desiccation-induced viable but nonculturable state in Pseudomonas putida KT2440, a survival strategy., PLoS One, 14, 10.1371/journal.pone.0219554 · DOI
  111. Phadtare, 2004, Genome-wide transcriptional analysis of the cold shock response in wild-type and cold-sensitive, quadruple-csp-deletion strains of Escherichia coli., J. Bacteriol., 186, 7007, 10.1128/jb.186.20.7007-7014.2004 · DOI
  112. Pletzer, 2016, Anti-biofilm peptides as a new weapon in antimicrobial warfare., Curr. Opin. Microbiol., 33, 35, 10.1016/j.mib.2016.05.016 · DOI
  113. Potvin, 2008, Sigma factors in Pseudomonas aeruginosa., FEMS Microbiol. Rev., 32, 38, 10.1111/j.1574-6976.2007.00092.x · DOI
  114. Pour, 2019, Investigating the formulation of alginate- gelatin encapsulated Pseudomonas fluorescens (VUPF5 and T17-4 strains) for controlling fusarium solani on potato., Int. J. Biol. Macromol., 133, 603, 10.1016/j.ijbiomac.2019.04.071 · DOI
  115. Power, 2011, Alginate beads as a storage, delivery and containment system for genetically modified PCB degrader and PCB biosensor derivatives of Pseudomonas fluorescens F113., J. Appl. Microbiol., 110, 1351, 10.1111/j.1365-2672.2011.04993.x · DOI
  116. Pravisya, 2018, Biotic priming with Pseudomonas fluorescens induce drought stress tolerance in abelmoschus esculentus (L.) moench (okra)., Physiol. Mol. Biol. Plants, 25, 101, 10.1007/s12298-018-0621-5 · DOI
  117. Priebe, 2014, Vaccines for Pseudomonas aeruginosa: A long and winding road., Expert Rev. Vaccines, 13, 507, 10.1586/14760584.2014.890053 · DOI
  118. Qiu, 2008, ClpXP proteases positively regulate alginate overexpression and mucoid conversion in Pseudomonas aeruginosa., Microbiology, 154, 2119, 10.1099/mic.0.2008/017368-0 · DOI
  119. Raaijmakers, 2010, Natural functions of lipopeptides from Bacillus and Pseudomonas: More than surfactants and antibiotics., FEMS Microbiol. Rev., 34, 1037, 10.1111/j.1574-6976.2010.00221.x · DOI · Paper page
  120. Ramos, 2001, Responses of gram-negative bacteria to certain environmental stressors., 10.1016/S1369-5274(00)00183-1 · DOI
  121. Raudales, 2014, Control of waterborne microbes in irrigation: A review., Agricult. Water Manage., 143, 9, 10.1016/j.agwat.2014.06.007 · DOI
  122. Rich, 2015, Biofilm formation and ethanol inhibition by bacterial contaminants of biofuel fermentation., Bioresour. Technol., 196, 347, 10.1016/j.biortech.2015.07.071 · DOI
  123. Richter, 2010, The heat shock response: Life on the verge of death., Mol. Cell, 40, 253, 10.1016/j.molcel.2010.10.006 · DOI
  124. Rolli, 2015, Improved plant resistance to drought is promoted by the root-associated microbiome as a water stress-dependent trait., Environ. Microbiol., 17, 316, 10.1111/1462-2920.12439 · DOI
  125. Roy, 2018, Strategies for combating bacterial biofilms: A focus on anti-biofilm agents and their mechanisms of action., Virulence, 9, 522, 10.1080/21505594.2017.1313372 · DOI
  126. Russell, 2003, Lethal effects of heat on bacterial physiology and structure., Sci. Prog., 86, 115, 10.3184/003685003783238699 · DOI
  127. Sandhya, 2010, Effect of plant growth promoting Pseudomonas spp. on compatible solutes, antioxidant status and plant growth of maize under drought stress., Plant Growth Regulat., 62, 21, 10.1007/s10725-010-9479-4 · DOI
  128. Schafhauser, 2014, The stringent response modulates 4-hydroxy-2-alkylquinoline biosynthesis and quorum-sensing hierarchy in Pseudomonas aeruginosa., J. Bacteriol., 196, 1641, 10.1128/jb.01086-13 · DOI
  129. Schiraldi, 2002, Trehalose production: Exploiting novel approaches., Trends Biotechnol., 20, 420, 10.1016/s0167-7799(02)02041-3 · DOI
  130. Schisler, 2016, Appraisal of selected osmoprotectants and carriers for formulating gram-negative biocontrol agents active against fusarium dry rot on potatoes in storage., Biol. Contr., 98, 1, 10.1016/j.biocontrol.2016.03.009 · DOI
  131. Schnider-Keel, 2001, The sigma factor AlgU (AlgT) controls exopolysaccharide production and tolerance towards desiccation and osmotic stress in the biocontrol agent Pseudomonas fluorescens CHA0., Appl. Environ. Microbiol., 67, 5683, 10.1128/AEM.67.12.5683-5693.2001 · DOI
  132. Schuster, 2004, The Pseudomonas aeruginosa RpoS regulon and its relationship to quorum sensing., Mol. Microbiol., 51, 973, 10.1046/j.1365-2958.2003.03886.x · DOI
  133. Shivaji, 2010, How do bacteria sense and respond to low temperature?, Arch. Microbiol., 192, 85, 10.1007/s00203-009-0539-y · DOI
  134. Silby, 2009, Requirement of polyphosphate by Pseudomonas fluorescens Pf0-1 for competitive fitness and heat tolerance in laboratory media and sterile soil., Appl. Environ. Microbiol., 75, 3872, 10.1128/AEM.00017-09 · DOI
  135. Singh, 2009, Conserved inserts in the Hsp60 (GroEL) and Hsp70 (DnaK) proteins are essential for cellular growth., Mol. Genet. Genomics MGG, 281, 361, 10.1007/s00438-008-0417-3 · DOI
  136. Singh, 2014, Antifreeze protein activity in arctic cryoconite bacteria., FEMS Microbiol. Lett., 351, 14, 10.1111/1574-6968.12345 · DOI
  137. Snider, 2008, The AAA+ superfamily of functionally diverse proteins., Genome Biol., 9, 216, 10.1186/gb-2008-9-4-216 · DOI
  138. Stoeckel, 2016, Growth of Pseudomonas weihenstephanensis, Pseudomonas proteolytica and Pseudomonas sp. in raw milk: Impact of residual heat-stable enzyme activity on stability of UHT milk during shelf-life., Int. Dairy J., 59, 20, 10.1016/j.idairyj.2016.02.045 · DOI
  139. Storz, 2011, Bacterial Stress Responses
  140. Su, 2013, Exploring the potential environmental functions of viable but non-culturable bacteria., World J. Microbiol. Biotechnol., 29, 2213, 10.1007/s11274-013-1390-5 · DOI
  141. Subramanian, 2016, Cold stress tolerance in psychrotolerant soil bacteria and their conferred chilling resistance in tomato (solanum lycopersicum mill.) under low temperatures., PLoS One, 11, 10.1371/journal.pone.0161592 · DOI
  142. Svenningsen, 2018, The biofilm matrix polysaccharides cellulose and alginate both protect Pseudomonas putida mt-2 against reactive oxygen species generated under matric stress and copper exposure., Microbiology, 164, 883, 10.1099/mic.0.000667 · DOI
  143. Thakur, 2013, Characterization of five ECF sigma factors in the genome of Pseudomonas syringae pv. syringae B728a., PLoS One, 8, 10.1371/journal.pone.0058846 · DOI
  144. Traxler, 2008, The global, ppGpp-mediated stringent response to amino acid starvation in Escherichia coli., Mol. Microbiol., 68, 1128, 10.1111/j.1365-2958.2008.06229.x · DOI
  145. Trevors, 2012, Bacterial gene expression at low temperatures., Extremoph. Life Under Extreme Condit., 16, 167, 10.1007/s00792-011-0423-y · DOI
  146. Troxler, 2012, Persistence of a biocontrol Pseudomonas inoculant as high populations of culturable and non-culturable cells in 200-cm-deep soil profiles., Soil Biol. Biochem., 44, 122, 10.1016/j.soilbio.2011.09.020 · DOI
  147. Valencia-Botín, 2012, A review of the studies and interactions of Pseudomonas syringae pathovars on wheat., Int. J. Agronomy, 2012, 10.1155/2012/692350 · DOI
  148. Varela, 2010, New structural and functional defects in polyphosphate deficient bacteria: A cellular and proteomic study., BMC Microbiol., 10, 7, 10.1186/1471-2180-10-7 · DOI
  149. Venketesh, 2008, Properties, potentials, and prospects of antifreeze proteins., Crit. Rev. Biotechnol., 28, 57, 10.1080/07388550801891152 · DOI
  150. Villeret, 1997, Preliminary crystal structure determination of the alkaline protease from the Antarctic psychrophile Pseudomonas aeruginosa., Protein Sci., 6, 2462, 10.1002/pro.5560061121 · DOI
  151. Vinella, 2005, Iron limitation induces SpoT-dependent accumulation of ppGpp in Escherichia coli., Mol. Microbiol., 56, 958, 10.1111/j.1365-2958.2005.04601.x · DOI
  152. Vorob’eva, 2004, Stressors, stress reactions, and survival of bacteria: A review., Appl. Biochem. Microbiol., 40, 217, 10.1023/B:ABIM.0000025941.11643.19 · DOI
  153. Vyas, 2009, Stress tolerance and genetic variability of phosphate-solubilizing fluorescent Pseudomonas from the cold deserts of the trans-himalayas., Microb. Ecol., 58, 425, 10.1007/s00248-009-9511-2 · DOI
  154. Wallace, 2017, Postharvest biological control of blue mold of apple by Pseudomonas fluorescens during commercial storage and potential modes of action., Postharv. Biolo. Technol., 133, 1, 10.1016/j.postharvbio.2017.07.003 · DOI
  155. Wang, 2002, A deep-sea hydrothermal vent isolate, Pseudomonas aeruginosa CW961, requires thiosulfate for Cd2+ tolerance and precipitation., Biotechnol. Lett., 24, 637, 10.1023/A:1015043324584 · DOI
  156. Wang, 2017, Structural basis of antifreeze activity of a bacterial multi-domain antifreeze protein., PLoS One, 12, 10.1371/journal.pone.0187169 · DOI
  157. Wang, 2014, Cloning and expression of a trehalose synthase from Pseudomonas putida KT2440 for the scale-up production of trehalose from maltose., Canad. J. Microbiol., 60, 599, 10.1139/cjm-2014-0330 · DOI
  158. Wang, Improvement of a dry formulation of Pseudomonas protegens SN15-2 against ralstonia solanacearum by combination of hyperosmotic cultivation with fluidized-bed drying., BioControl, 65, 10042, 10.1007/s10526-020-10042-x · DOI
  159. Wang, Hyperosmotic adaptation of Pseudomonas protegens SN15-2 helps cells to survive at lethal temperatures., Biotechnol. Bioproc. Engine., 25, 403, 10.1007/s12257-019-0430-x · DOI
  160. Wasi, 2013, Use of Pseudomonas spp. for the bioremediation of environmental pollutants: A review., Environ. Monitor. Assess., 185, 8147, 10.1007/s10661-013-3163-x · DOI
  161. Welsh, 2000, Ecological significance of compatible solute accumulation by micro-organisms: From single cells to global climate., FEMS Microbiol. Rev., 24, 263, 10.1016/S0168-6445(99)00038-8 · DOI
  162. Wu, 2020, The (p)ppGpp-mediated stringent response regulatory system globally inhibits primary metabolism and activates secondary metabolism in pseudomonas protegens H78., Appl. Microbiol. Biotechnol., 104, 3061, 10.1007/s00253-020-10421-5 · DOI

Cited by

Metadata

Authors
Craig, K., Johnson, B. R., & Grunden, A.
Venue
Frontiers in Microbiology
Published
2021-05-10
Volume
12
ISSN
1664-302X
Cited by
66
References
2

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review