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Exploration of the Muribaculaceae Family in the Gut Microbiota: Diversity, Metabolism, and Function

Zhu, Yiqing, Chen, Borui, Zhang, Xinyu, Akbar, Muhammad Toheed, Wu, Tong, Zhang, Yiyun, Zhi, Li, Shen, Qun·2024·Nutrients

Abstract

The gut microbiota are mainly composed of Bacteroidetes and Firmicutes and are crucial for metabolism and immunity. Muribaculaceae are a family of bacteria within the order Bacteroidetes. Muribaculaceae produce short-chain fatty acids via endogenous (mucin glycans) and exogenous polysaccharides (dietary fibres). The family exhibits a cross-feeding relationship with probiotics, such as Bifidobacterium and Lactobacillus. The alleviating effects of a plant-based diet on inflammatory bowel disease, obesity, and type 2 diabetes are associated with an increased abundance of Muribaculaceae, a potential probiotic bacterial family. This study reviews the current findings related to Muribaculaceae and systematically introduces their diversity, metabolism, and function. Additionally, the mechanisms of Muribaculaceae in the alleviation of chronic diseases and the limitations in this field of research are introduced.

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  1. [1]Wexler A.G. Goodman A.L. An insider’s perspective: Bacteroides as a window into the microbiome Nat. Microbiol. 2017 2 17026 10.1038/nmicrobiol.2017.26 28440278 PMC5679392 · DOI
  2. [3]Zhao T. Zhang Y. Nan L. Zhu Q. Wang S. Xie Y. Dong X. Cao C. Lin X. Lu Y. Impact of structurally diverse polysaccharides on colonic mucin O-glycosylation and gut microbiota NPJ Biofilms Microbiomes 2023 9 97 10.1038/s41522-023-00468-3 38081891 PMC10713555 · DOI
  3. [4]Kim H. Caulfield L.E. Garcia-Larsen V. Steffen L.M. Coresh J. Rebholz C.M. Plant-based diets are associated with a lower risk of incident cardiovascular disease, cardiovascular disease mortality, and all-cause mortality in a general population of middle-aged adults J. Am. Heart Assoc. 2019 8 e012865 10.1161/JAHA.119.012865 31387433 PMC6759882 · DOI · Paper page
  4. [5]Zhao R. Shen G.X. Impact of anthocyanin component and metabolite of Saskatoon berry on gut microbiome and relationship with fecal short chain fatty acids in diet-induced insulin resistant mice J. Nutr. Biochem. 2023 111 109201 10.1016/j.jnutbio.2022.109201 36332818 · DOI
  5. [6]Li Z.-R. Jia R.-B. Wu J. Lin L. Ou Z.-R. Liao B. Zhang L. Zhang X. Song G. Zhao M. Sargassum fusiforme polysaccharide partly replaces acarbose against type 2 diabetes in rats Int. J. Biol. Macromol. 2021 170 447 458 10.1016/j.ijbiomac.2020.12.126 33352159 · DOI
  6. [7]Chen Q. Luo Y. Shen Y. Li X. Yang H. Li J. Wang J. Xiao Y. Fructose corn syrup induces inflammatory injury and obesity by altering gut microbiota and gut microbiota-related arachidonic acid metabolism J. Nutr. Biochem. 2024 124 109527 10.1016/j.jnutbio.2023.109527 37979711 · DOI
  7. [8]Makioka Y. Tsukahara T. Ijichi T. Inoue R. Oral supplementation of Bifidobacterium longum strain BR-108 alters cecal microbiota by stimulating gut immune system in mice irrespectively of viability Biosci. Biotechnol. Biochem. 2018 82 1180 1187 10.1080/09168451.2018.1451738 29557273 · DOI
  8. [9]Lin Y.-C. Chen Y.-T. Li K.-Y. Chen M.-J. Investigating the mechanistic differences of obesity-inducing Lactobacillus kefiranofaciens M1 and anti-obesity Lactobacillus mali APS1 by microbolomics and metabolomics Front. Microbiol. 2020 11 1454 10.3389/fmicb.2020.01454 32733406 PMC7360855 · DOI
  9. [10]Yin T. Bayanjargal S. Fang B. Inaba C. Mutoh M. Kawahara T. Tanaka S. Watanabe J. Lactobacillus plantarum Shinshu N-07 isolated from fermented Brassica rapa L. attenuates visceral fat accumulation induced by high-fat diet in mice Benef. Microbes 2020 11 655 667 10.3920/BM2020.0009 33045842 · DOI
  10. [11]Bao C. Liu S. Shang Z. Liu Y. Wang J. Zhang W. Dong B. Cao Y. Bacillus amyloliquefaciens TL106 protects mice against enterohaemorrhagic Escherichia coli O157: H7-induced intestinal disease through improving immune response, intestinal barrier function and gut microbiota J. Appl. Microbiol. 2021 131 470 484 10.1111/jam.14952 33289241 · DOI
  11. [12]Ormerod K.L. Wood D.L. Lachner N. Gellatly S.L. Daly J.N. Parsons J.D. Dal’Molin C.G. Palfreyman R.W. Nielsen L.K. Cooper M.A. Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals Microbiome 2016 4 36 10.1186/s40168-016-0181-2 27388460 PMC4936053 · DOI
  12. [13]Chung Y.W. Gwak H.-J. Moon S. Rho M. Ryu J.-H. Functional dynamics of bacterial species in the mouse gut microbiome revealed by metagenomic and metatranscriptomic analyses PLoS ONE 2020 15 e0227886 10.1371/journal.pone.0227886 31978162 PMC6980644 · DOI
  13. [14]Smith B.J. Miller R.A. Schmidt T.M. Muribaculaceae genomes assembled from metagenomes suggest genetic drivers of differential response to acarbose treatment in mice Msphere 2021 6 e00851-21 10.1128/msphere.00851-21 34851167 PMC8636109 · DOI
  14. [15]Lagkouvardos I. Lesker T.R. Hitch T.C. Gálvez E.J. Smit N. Neuhaus K. Wang J. Baines J.F. Abt B. Stecher B. Sequence and cultivation study of Muribaculaceae reveals novel species, host preference, and functional potential of this yet undescribed family Microbiome 2019 7 28 10.1186/s40168-019-0637-2 30782206 PMC6381624 · DOI
  15. [16]Miyake S. Ding Y. Soh M. Low A. Seedorf H. Muribaculum gordoncarteri sp. nov., an anaerobic bacterium from the faeces of C57BL/6J mice Int. J. Syst. Evol. Microbiol. 2020 70 4725 4729 10.1099/ijsem.0.004338 32687462 · DOI
  16. [17]Miyake S. Ding Y. Soh M. Seedorf H. Complete genome sequence of Duncaniella muris strain B8, isolated from the feces of C57/BL6 mice Microbiol. Resour. Announc. 2019 8 e00566-19 10.1128/MRA.00566-19 31346018 PMC6658688 · DOI
  17. [18]Miyake S. Ding Y. Soh M. Low A. Seedorf H. Cultivation and description of Duncaniella dubosii sp. nov., Duncaniella freteri sp. nov. and emended description of the species Duncaniella muris Int. J. Syst. Evol. Microbiol. 2020 70 3105 3110 10.1099/ijsem.0.004137 32250242 · DOI
  18. [19]Park J.K. Chang D.-H. Rhee M.-S. Jeong H. Song J. Ku B.J. Kim S.B. Lee M. Kim B.-C. Heminiphilus faecis gen. nov., sp. nov., a member of the family Muribaculaceae, isolated from mouse faeces and emended description of the genus Muribaculum Antonie Van Leeuwenhoek 2021 114 275 286 10.1007/s10482-021-01521-x 33566238 · DOI
  19. [20]Lagkouvardos I. Pukall R. Abt B. Foesel B.U. Meier-Kolthoff J.P. Kumar N. Bresciani A. Martínez I. Just S. Ziegler C. The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota Nat. Microbiol. 2016 1 16131 10.1038/nmicrobiol.2016.131 27670113 · DOI
  20. [21]Schoch C.L. Ciufo S. Domrachev M. Hotton C.L. Kannan S. Khovanskaya R. Leipe D. Mcveigh R. O’Neill K. Robbertse B. NCBI Taxonomy: A comprehensive update on curation, resources and tools Database 2020 2020 baaa062 10.1093/database/baaa062 32761142 PMC7408187 · DOI · Paper page
  21. [22]Wylensek D. Hitch T.C. Riedel T. Afrizal A. Kumar N. Wortmann E. Liu T. Devendran S. Lesker T.R. Hernández S.B. A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity Nat. Commun. 2020 11 6389 10.1038/s41467-020-19929-w 33319778 PMC7738495 · DOI
  22. [23]Afrizal A. Jennings S.A. Hitch T.C. Riedel T. Basic M. Panyot A. Treichel N. Hager F.T. Wong E.O.-Y. Wolter B. Enhanced cultured diversity of the mouse gut microbiota enables custom-made synthetic communities Cell Host Microbe 2022 30 1630 1645.e25 10.1016/j.chom.2022.09.011 36208631 · DOI
  23. [24]Hinsu A.T. Pandit R.J. Patel S.H. Psifidi A. Tomley F.M. Das S.K. Blake D.P. Joshi C.G. Genome reconstruction of a novel carbohydrate digesting bacterium from the chicken caecal microflora Meta Gene 2019 20 100543 10.1016/j.mgene.2019.01.002 · DOI
  24. [25]Gilroy R. Ravi A. Getino M. Pursley I. Horton D.L. Alikhan N.-F. Baker D. Gharbi K. Hall N. Watson M. Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture PeerJ 2021 9 e10941 10.7717/peerj.10941 33868800 PMC8035907 · DOI
  25. [26]Forster S.C. Clare S. Beresford-Jones B.S. Harcourt K. Notley G. Stares M. Kumar N. Soderholm A.T. Adoum A. Wong H. Novel gut pathobionts confound results in a widely used mouse model of human inflammatory disease bioRxiv 2021 02 430393
  26. [27]Wang Y. Nan X. Zhao Y. Jiang L. Wang H. Zhang F. Hua D. Liu J. Yao J. Yang L. Dietary supplementation of inulin ameliorates subclinical mastitis via regulation of rumen microbial community and metabolites in dairy cows Microbiol. Spectr. 2021 9 e00105-21 10.1128/Spectrum.00105-21 34494854 PMC8557905 · DOI
  27. [28]Xu C. Liu J. Gao J. Wu X. Cui C. Wei H. Zheng R. Peng J. Combined soluble fiber-mediated intestinal microbiota improve insulin sensitivity of obese mice Nutrients 2020 12 351 10.3390/nu12020351 32013093 PMC7071167 · DOI
  28. [29]Wan J. Wu Y. Pham Q. Li R.W. Yu L. Chen M.-H. Boue S.M. Yokoyama W. Li B. Wang T.T. Effects of differences in resistant starch content of rice on intestinal microbial composition J. Agric. Food Chem. 2021 69 8017 8027 10.1021/acs.jafc.0c07887 34236836 · DOI
  29. [30]Zou H. Gao H. Liu Y. Zhang Z. Zhao J. Wang W. Ren B. Tan X. Dietary inulin alleviated constipation induced depression and anxiety-like behaviors: Involvement of gut microbiota and microbial metabolite short-chain fatty acid Int. J. Biol. Macromol. 2024 259 129420 10.1016/j.ijbiomac.2024.129420 38219945 · DOI
  30. [31]Li X. Liang J. Gao W. Zhang Y. Zeng H. Zheng B. Effects of butyrylated lotus seed starch on small intestinal bacteria and short-chain fatty acid production in mice Food Biosci. 2023 55 102931 10.1016/j.fbio.2023.102931 · DOI
  31. [32]Watanabe K. Yamano M. Masujima Y. Ohue-Kitano R. Kimura I. Curdlan intake changes gut microbial composition, short-chain fatty acid production, and bile acid transformation in mice Biochem. Biophys. Rep. 2021 27 101095 10.1016/j.bbrep.2021.101095 34401531 PMC8358642 · DOI
  32. [33]Deng J. Zou X. Liang Y. Zhong J. Zhou K. Zhang J. Zhang M. Wang Z. Sun Y. Li M. Hypoglycemic effects of different molecular weight konjac glucomannans via intestinal microbiota and SCFAs mediated mechanism Int. J. Biol. Macromol. 2023 234 122941 10.1016/j.ijbiomac.2022.12.160 36563827 · DOI
  33. [34]Wu Y. Hu H. Dai X. Che H. Zhang H. Effects of dietary intake of potatoes on body weight gain, satiety-related hormones, and gut microbiota in healthy rats RSC Adv. 2019 9 33290 33301 10.1039/C9RA04867G 35529109 PMC9073283 · DOI
  34. [35]Garcia-Mazcorro J.F. Lage N.N. Mertens-Talcott S. Talcott S. Chew B. Dowd S.E. Kawas J.R. Noratto G.D. Effect of dark sweet cherry powder consumption on the gut microbiota, short-chain fatty acids, and biomarkers of gut health in obese db/db mice PeerJ 2018 6 e4195 10.7717/peerj.4195 29312822 PMC5756454 · DOI
  35. [36]Usui Y. Kimura Y. Satoh T. Takemura N. Ouchi Y. Ohmiya H. Kobayashi K. Suzuki H. Koyama S. Hagiwara S. Effects of long-term intake of a yogurt fermented with Lactobacillus delbrueckii subsp. bulgaricus 2038 and Streptococcus thermophilus 1131 on mice Int. Immunol. 2018 30 319 331 10.1093/intimm/dxy035 29767727 · DOI
  36. [37]Liu Y. Gao Y. Ma F. Sun M. Mu G. Tuo Y. The ameliorative effect of Lactobacillus plantarum Y44 oral administration on inflammation and lipid metabolism in obese mice fed with a high fat diet Food Funct. 2020 11 5024 5039 10.1039/D0FO00439A 32530448 · DOI
  37. [38]Aindelis G. Ypsilantis P. Chlichlia K. Alterations in faecal microbiota and elevated levels of intestinal IgA following oral administration of Lacticaseibacillus casei in mice Probiotics Antimicrob. Proteins 2021 15 524 534 10.1007/s12602-021-09864-7 34676502 · DOI
  38. [39]Xie Z. Li M. Qian M. Yang Z. Han X. Co-cultures of Lactobacillus acidophilus and Bacillus subtilis enhance mucosal barrier by modulating gut microbiota-derived short-chain fatty acids Nutrients 2022 14 4475 10.3390/nu14214475 36364738 PMC9657225 · DOI
  39. [40]Lee K.S. Palatinszky M. Pereira F.C. Nguyen J. Fernandez V.I. Mueller A.J. Menolascina F. Daims H. Berry D. Wagner M. An automated Raman-based platform for the sorting of live cells by functional properties Nat. Microbiol. 2019 4 1035 1048 10.1038/s41564-019-0394-9 30886359 · DOI
  40. [41]Paone P. Cani P.D. Mucus barrier, mucins and gut microbiota: The expected slimy partners? Gut 2020 69 2232 2243 10.1136/gutjnl-2020-322260 32917747 PMC7677487 · DOI
  41. [42]Crouch L. Liberato M. Urbanowicz P. Baslé A. Lamb C. Stewart C. Cooke K. Doona M. Needham S. Brady R. Prominent members of the human gut microbiota express endo-acting O-glycanases to initiate mucin breakdown Nat. Commun. 2020 11 4017 10.1038/s41467-020-17847-5 32782292 PMC7419316 · DOI
  42. [43]Pan L. Fu T. Cheng H. Mi J. Shang Q. Yu G. Polysaccharide from edible alga Gloiopeltis furcata attenuates intestinal mucosal damage by therapeutically remodeling the interactions between gut microbiota and mucin O-glycans Carbohydr. Polym. 2022 278 118921 10.1016/j.carbpol.2021.118921 34973740 · DOI
  43. [44]Pereira F.C. Wasmund K. Cobankovic I. Jehmlich N. Herbold C.W. Lee K.S. Sziranyi B. Vesely C. Decker T. Stocker R. Rational design of a microbial consortium of mucosal sugar utilizers reduces Clostridiodes difficile colonization Nat. Commun. 2020 11 5104 10.1038/s41467-020-18928-1 33037214 PMC7547075 · DOI
  44. [45]Zhou K. Strategies to promote abundance of Akkermansia muciniphila, an emerging probiotics in the gut, evidence from dietary intervention studies J. Funct. Foods 2017 33 194 201 10.1016/j.jff.2017.03.045 30416539 PMC6223323 · DOI
  45. [46]Pei L. Liu W. Liu L. Wang X. Jiang L. Chen Z. Wang Q. Wang P. Xu H. Morel (Morchella spp.) intake alters gut microbial community and short-chain fatty acid profiles in mice Front. Nutr. 2023 10 1237237 10.3389/fnut.2023.1237237 37810928 PMC10556497 · DOI
  46. [47]Moens F. Verce M. De Vuyst L. Lactate-and acetate-based cross-feeding interactions between selected strains of lactobacilli, bifidobacteria and colon bacteria in the presence of inulin-type fructans Int. J. Food Microbiol. 2017 241 225 236 10.1016/j.ijfoodmicro.2016.10.019 27810444 · DOI
  47. [49]Singh R.P. Glycan utilisation system in Bacteroides and Bifidobacteria and their roles in gut stability and health Appl. Microbiol. Biotechnol. 2019 103 7287 7315 10.1007/s00253-019-10012-z 31332487 · DOI
  48. [50]Zeng Z. Guo X. Zhang J. Yuan Q. Chen S. Lactobacillus paracasei modulates the gut microbiota and improves inflammation in type 2 diabetic rats Food Funct. 2021 12 6809 6820 10.1039/D1FO00515D 34113945 · DOI
  49. [51]Yun S.-w. Son Y.-H. Lee D.-Y. Shin Y.-J. Han M.J. Kim D.-H. Lactobacillus plantarum and Bifidobacterium bifidum alleviate dry eye in mice with exorbital lacrimal gland excision by modulating gut inflammation and microbiota Food Funct. 2021 12 2489 2497 10.1039/D0FO02984J 33656499 · DOI
  50. [52]Gao Y. Liu Y. Ma F. Sun M. Song Y. Xu D. Mu G. Tuo Y. Lactobacillus plantarum Y44 alleviates oxidative stress by regulating gut microbiota and colonic barrier function in Balb/C mice with subcutaneous d-galactose injection Food Funct. 2021 12 373 386 10.1039/D0FO02794D 33325942 · DOI
  51. [53]Li W. Zhang S. Wang Y. Bian H. Yu S. Huang L. Ma W. Complex probiotics alleviate ampicillin-induced antibiotic-associated diarrhea in mice Front. Microbiol. 2023 14 1156058 10.3389/fmicb.2023.1156058 37125182 PMC10145528 · DOI
  52. [54]Mu Z. Yang Y. Xia Y. Wang F. Sun Y. Yang Y. Ai L. Probiotic yeast BR14 ameliorates DSS-induced colitis by restoring the gut barrier and adjusting the intestinal microbiota Food Funct. 2021 12 8386 8398 10.1039/D1FO01314A 34355721 · DOI
  53. [55]Dong J.-P. Zheng Y. Wu T. He Q. Teng G.-G. Wang H.-H. Protective effect of Saccharomyces boulardii on intestinal mucosal barrier of dextran sodium sulfate-induced colitis in mice Chin. Med. J. 2019 132 1951 1958 10.1097/CM9.0000000000000364 31335471 PMC6708699 · DOI
  54. [56]Gryaznova M. Burakova I. Smirnova Y. Morozova P. Chirkin E. Gureev A. Mikhaylov E. Korneeva O. Syromyatnikov M. Effect of Probiotic Bacteria on the Gut Microbiome of Mice with Lipopolysaccharide-Induced Inflammation Microorganisms 2024 12 1341 10.3390/microorganisms12071341 39065109 PMC11278525 · DOI
  55. [57]Hu W. Lu W. Li L. Zhang H. Lee Y.k. Chen W. Zhao J. Both living and dead Faecalibacterium prausnitzii alleviate house dust mite-induced allergic asthma through the modulation of gut microbiota and short-chain fatty acid production J. Sci. Food Agric. 2021 101 5563 5573 10.1002/jsfa.11207 33709404 · DOI
  56. [58]Pei L. Liu J. Huang Z. Iqbal M. Shen Y. Effects of lactic acid bacteria isolated from equine on salmonella-infected gut mouse model Probiot. Antimicrob. Proteins 2021 15 469 478 10.1007/s12602-021-09841-0 34651283 · DOI
  57. [59]Zhang M. Yang Z. Wu G. Xu F. Zhang J. Luo X. Ma Y. Pang H. Duan Y. Chen J. Effects of Probiotic-Fermented Feed on the Growth Profile, Immune Functions, and Intestinal Microbiota of Bamei Piglets Animals 2024 14 647 10.3390/ani14040647 38396614 PMC10886304 · DOI
  58. [60]Wang Y. Sun J. Xie S. Zhou Y. Wang T. Liu Z. Li C. Gao L. Pan T. Increased abundance of bacteria of the family Muribaculaceae achieved by fecal microbiome transplantation correlates with the inhibition of kidney calcium oxalate stone deposition in experimental rats Front. Cell. Infect. Microbiol. 2023 13 1145196 10.3389/fcimb.2023.1145196 37313343 PMC10258309 · DOI
  59. [61]Wang H. Wang G. Banerjee N. Liang Y. Du X. Boor P.J. Hoffman K.L. Khan M.F. Aberrant gut microbiome contributes to intestinal oxidative stress, barrier dysfunction, inflammation and systemic autoimmune responses in MRL/lpr mice Front. Immunol. 2021 12 651191 10.3389/fimmu.2021.651191 33912174 PMC8071869 · DOI
  60. [62]Volk J.K. Nyström E.E. van der Post S. Abad B.M. Schroeder B.O. Johansson Å. Svensson F. Jäverfelt S. Johansson M.E. Hansson G.C. The Nlrp6 inflammasome is not required for baseline colonic inner mucus layer formation or function J. Exp. Med. 2019 216 2602 2618 10.1084/jem.20190679 31420376 PMC6829596 · DOI
  61. [63]Li A.-l. Ni W.-w. Li Y. Zhang X. Yang J.-j. Ma X.-y. Jia X.-d. Li C. Liu L.-b. Effect of 2′-fucosyllactose supplementation on intestinal flora in mice with intestinal inflammatory diseases Int. Dairy J. 2020 110 104797 10.1016/j.idairyj.2020.104797 · DOI
  62. [64]Luo J. Wang Z. Fan B. Wang L. Liu M. An Z. Zhao X. A comparative study of the effects of different fucoidans on cefoperazone-induced gut microbiota disturbance and intestinal inflammation Food Funct. 2021 12 9087 9097 10.1039/D1FO00782C 34388231 · DOI
  63. [65]Li A.l. Ni W.w. Zhang Q.m. Li Y. Zhang X. Wu H.y. Du P. Hou J.c. Zhang Y. Effect of cinnamon essential oil on gut microbiota in the mouse model of dextran sodium sulfate-induced colitis Microbiol. Immunol. 2020 64 23 32 10.1111/1348-0421.12749 31595527 · DOI
  64. [66]van der Hee B. Wells J.M. Microbial regulation of host physiology by short-chain fatty acids Trends Microbiol. 2021 29 700 712 10.1016/j.tim.2021.02.001 33674141 · DOI
  65. [67]Alatawi H. Mosli M. Saadah O.I. Annese V. Al-Hindi R. Alatawy M. Al-Amrah H. Alshehri D. Bahieldin A. Edris S. Attributes of intestinal microbiota composition and their correlation with clinical primary non-response to anti-TNF-α agents in inflammatory bowel disease patients Bosn. J. Basic Med. Sci. 2022 22 412 34761733 PMC9162754
  66. [68]Monk J.M. Lepp D. Zhang C.P. Wu W. Zarepoor L. Lu J.T. Pauls K.P. Tsao R. Wood G.A. Robinson L.E. Diets enriched with cranberry beans alter the microbiota and mitigate colitis severity and associated inflammation J. Nutr. Biochem. 2016 28 129 139 10.1016/j.jnutbio.2015.10.014 26878790 · DOI
  67. [69]Shao J. Li Z. Gao Y. Zhao K. Lin M. Li Y. Wang S. Liu Y. Chen L. Construction of a “bacteria-metabolites” co-expression network to clarify the anti–ulcerative colitis effect of flavonoids of Sophora flavescens Aiton by regulating the “host–microbe” interaction Front. Pharmacol. 2021 12 710052 10.3389/fphar.2021.710052 34721011 PMC8553221 · DOI
  68. [70]Shao X. Sun C. Tang X. Zhang X. Han D. Liang S. Qu R. Hui X. Shan Y. Hu L. Anti-inflammatory and intestinal microbiota modulation properties of Jinxiang garlic (Allium sativum L.) polysaccharides toward dextran sodium sulfate-induced colitis J. Agric. Food Chem. 2020 68 12295 12309 10.1021/acs.jafc.0c04773 33095019 · DOI
  69. [71]Xia X. Lin H. Luo F. Wu X. Zhu L. Chen S. Luo H. Ye F. Peng X. Zhang Y. Oryzanol ameliorates DSS-stimulated gut barrier damage via targeting the gut microbiota accompanied by the TLR4/NF-κB/NLRP3 cascade response in vivo J. Agric. Food Chem. 2022 70 15747 15762 10.1021/acs.jafc.2c04354 36474430 · DOI
  70. [72]Zhan F. Song W. Fan Y. Wang F. Wang Q. Cucurbitacin E Alleviates Colonic Barrier Function Impairment and Inflammation Response and Improves Microbial Composition on Experimental Colitis Models J. Inflamm. Res. 2024 17 2745 2756 10.2147/JIR.S456353 38737108 PMC11086439 · DOI
  71. [73]Guo S. Geng W. Chen S. Wang L. Rong X. Wang S. Wang T. Xiong L. Huang J. Pang X. Ginger alleviates DSS-induced ulcerative colitis severity by improving the diversity and function of gut microbiota Front. Pharmacol. 2021 12 632569 10.3389/fphar.2021.632569 33692694 PMC7937968 · DOI
  72. [74]Kang J. Sun M. Chang Y. Chen H. Zhang J. Liang X. Xiao T. Butyrate ameliorates colorectal cancer through regulating intestinal microecological disorders Anti-Cancer Drugs 2023 34 227 237 10.1097/CAD.0000000000001413 36305358 PMC9815807 · DOI
  73. [75]Liu Y. Zhou M. Yang M. Jin C. Song Y. Chen J. Gao M. Ai Z. Su D. Pulsatilla chinensis saponins ameliorate inflammation and DSS-induced ulcerative colitis in rats by regulating the composition and diversity of intestinal flora Front. Cell. Infect. Microbiol. 2021 11 728929 10.3389/fcimb.2021.728929 34804990 PMC8602866 · DOI
  74. [76]Wang K. Xu X. Maimaiti A. Hao M. Sang X. Shan Q. Wu X. Cao G. Gut microbiota disorder caused by diterpenoids extracted from Euphorbia pekinensis aggravates intestinal mucosal damage Pharmacol. Res. Perspect. 2021 9 e00765 10.1002/prp2.765 34523246 PMC8440943 · DOI
  75. [77]Gao R. Tian S. Wang J. Zhu W. Galacto-oligosaccharides improve barrier function and relieve colonic inflammation via modulating mucosa-associated microbiota composition in lipopolysaccharides-challenged piglets J. Anim. Sci. Biotechnol. 2021 12 92 10.1186/s40104-021-00612-z 34376253 PMC8356462 · DOI
  76. [78]Wang Q. Xu K. Cai X. Wang C. Cao Y. Xiao J. Rosmarinic acid restores colonic mucus secretion in colitis mice by regulating gut microbiota-derived metabolites and the activation of inflammasomes J. Agric. Food Chem. 2023 71 4571 4585 10.1021/acs.jafc.2c08444 36883243 · DOI
  77. [79]Liu R. Wang J. Zhao Y. Zhou Q. Yang X. Gao Y. Li Q. Bai M. Liu J. Liang Y. Study on the mechanism of modified Gegen Qinlian decoction in regulating the intestinal flora-bile acid-TGR5 axis for the treatment of type 2 diabetes mellitus based on macro genome sequencing and targeted metabonomics integration Phytomedicine 2024 132 155329 10.1016/j.phymed.2023.155329 38853123 · DOI
  78. [80]Du Y. Li D.x. Lu D.y. Zhang R. Zheng X.x. Xu B.j. Zhao Y.l. Ji S. Guo M.z. Wang L. Morus alba L. water extract changes gut microbiota and fecal metabolome in mice induced by high-fat and high-sucrose diet plus low-dose streptozotocin Phytother. Res. 2022 36 1241 1257 10.1002/ptr.7343 35129235 · DOI
  79. [81]Li Z.-R. Jia R.-B. Luo D. Lin L. Zheng Q. Zhao M. The positive effects and underlying mechanisms of Undaria pinnatifida polysaccharides on type 2 diabetes mellitus in rats Food Funct. 2021 12 11898 11912 10.1039/D1FO01838H 34739010 · DOI
  80. [82]Zheng J. Li H. Zhang X. Jiang M. Luo C. Lu Z. Xu Z. Shi J. Prebiotic mannan-oligosaccharides augment the hypoglycemic effects of metformin in correlation with modulating gut microbiota J. Agric. Food Chem. 2018 66 5821 5831 10.1021/acs.jafc.8b00829 29701959 · DOI
  81. [83]Tang Y. Yan M. Fang Z. Jin S. Xu T. Effects of metformin, saxagliptin and repaglinide on gut microbiota in high-fat diet/streptozocin-induced type 2 diabetic mice BMJ Open Diabetes Res. Care 2024 12 e003837 10.1136/bmjdrc-2023-003837 PMC11085777 38719505 · DOI
  82. [84]Dong J. Liang Q. Niu Y. Jiang S. Zhou L. Wang J. Ma C. Kang W. Effects of Nigella sativa seed polysaccharides on type 2 diabetic mice and gut microbiota Int. J. Biol. Macromol. 2020 159 725 738 10.1016/j.ijbiomac.2020.05.042 32437806 · DOI
  83. [85]Chen J. Ding X. Wu R. Tong B. Zhao L. Lv H. Meng X. Liu Y. Ren B. Li J. Novel sesquiterpene glycoside from loquat leaf alleviates type 2 diabetes mellitus combined with nonalcoholic fatty liver disease by improving insulin resistance, oxidative stress, inflammation, and gut microbiota composition J. Agric. Food Chem. 2021 69 14176 14191 10.1021/acs.jafc.1c05596 34783554 · DOI
  84. [86]Yu F. Han W. Zhan G. Li S. Jiang X. Wang L. Xiang S. Zhu B. Yang L. Luo A. Abnormal gut microbiota composition contributes to the development of type 2 diabetes mellitus in db/db mice Aging 2019 11 10454 10.18632/aging.102469 31760385 PMC6914402 · DOI
  85. [87]Deng J. Zhong J. Long J. Zou X. Wang D. Song Y. Zhou K. Liang Y. Huang R. Wei X. Hypoglycemic effects and mechanism of different molecular weights of konjac glucomannans in type 2 diabetic rats Int. J. Biol. Macromol. 2020 165 2231 2243 10.1016/j.ijbiomac.2020.10.021 33058981 · DOI
  86. [88]Zhang M. Yang L. Zhu M. Yang B. Yang Y. Jia X. Feng L. Moutan cortex polysaccharide ameliorates diabetic kidney disease via modulating gut microbiota dynamically in rats Int. J. Biol. Macromol. 2022 206 849 860 10.1016/j.ijbiomac.2022.03.077 35307460 · DOI
  87. [89]Magne F. Gotteland M. Gauthier L. Zazueta A. Pesoa S. Navarrete P. Balamurugan R. The firmicutes/bacteroidetes ratio: A relevant marker of gut dysbiosis in obese patients? Nutrients 2020 12 1474 10.3390/nu12051474 32438689 PMC7285218 · DOI · Paper page
  88. [91]Osborne G. Wu F. Yang L. Kelly D. Hu J. Li H. Jasmine F. Kibriya M.G. Parvez F. Shaheen I. The association between gut microbiome and anthropometric measurements in Bangladesh Gut Microbes 2020 11 63 76 10.1080/19490976.2019.1614394 31138061 PMC6973329 · DOI
  89. [92]Qian L. Gao R. Hong L. Pan C. Li H. Huang J. Qin H. Association analysis of dietary habits with gut microbiota of a native Chinese community Exp. Ther. Med. 2018 16 856 866 10.3892/etm.2018.6249 30112040 PMC6090428 · DOI
  90. [93]Barouei J. Bendiks Z. Martinic A. Mishchuk D. Heeney D. Hsieh Y.H. Kieffer D. Zaragoza J. Martin R. Slupsky C. Microbiota, metabolome, and immune alterations in obese mice fed a high-fat diet containing type 2 resistant starch Mol. Nutr. Food Res. 2017 61 1700184 10.1002/mnfr.201700184 28736992 · DOI
  91. [94]Muhomah T.A. Nishino N. Katsumata E. Haoming W. Tsuruta T. High-fat diet reduces the level of secretory immunoglobulin A coating of commensal gut microbiota Biosci. Microbiota Food Health 2019 38 55 64 10.12938/bmfh.18-027 31106108 PMC6502715 · DOI
  92. [95]Liu H. Zhu H. Xia H. Yang X. Yang L. Wang S. Wen J. Sun G. Different effects of high-fat diets rich in different oils on lipids metabolism, oxidative stress and gut microbiota Food Res. Int. 2021 141 110078 10.1016/j.foodres.2020.110078 33641963 · DOI
  93. [96]Hua Y. Fan R. Zhao L. Tong C. Qian X. Zhang M. Xiao R. Ma W. Trans-fatty acids alter the gut microbiota in high-fat-diet-induced obese rats Br. J. Nutr. 2020 124 1251 1263 10.1017/S0007114520001841 32475367 · DOI
  94. [97]Júnior R.E.M. de Carvalho L.M. Pedersen A.S.B. Damasceno S. Maioli T.U. de Faria A.M.C. Godard A.L.B. Interaction between high-fat diet and ethanol intake leads to changes on the fecal microbiome J. Nutr. Biochem. 2019 72 108215 31473508
  95. [98]Ye J. Zhao Y. Chen X. Zhou H. Yang Y. Zhang X. Huang Y. Zhang N. Lui E.M. Xiao M. Pu-erh tea ameliorates obesity and modulates gut microbiota in high fat diet fed mice Food Res. Int. 2021 144 110360 10.1016/j.foodres.2021.110360 34053553 · DOI
  96. [99]Mu H. Zhou Q. Yang R. Zeng J. Li X. Zhang R. Tang W. Li H. Wang S. Shen T. Naringin attenuates high fat diet induced non-alcoholic fatty liver disease and gut bacterial dysbiosis in mice Front. Microbiol. 2020 11 585066 10.3389/fmicb.2020.585066 33281780 PMC7691324 · DOI
  97. [100]Loubet Filho P.S. Baseggio A.M. Vuolo M.M. Reguengo L.M. Biasoto A.C.T. Correa L.C. Junior S.B. Cagnon V.H.A. Cazarin C.B.B. Júnior M.R.M. Gut microbiota modulation by jabuticaba peel and its effect on glucose metabolism via inflammatory signaling Curr. Res. Food Sci. 2022 5 382 391 10.1016/j.crfs.2022.02.001 35198998 PMC8850559 · DOI
  98. [101]Paone P. Suriano F. Jian C. Korpela K. Delzenne N.M. Van Hul M. Salonen A. Cani P.D. Prebiotic oligofructose protects against high-fat diet-induced obesity by changing the gut microbiota, intestinal mucus production, glycosylation and secretion Gut Microbes 2022 14 2152307 10.1080/19490976.2022.2152307 36448728 PMC9715274 · DOI
  99. [102]Yu Y. Zeng F. Han P. Zhang L. Yang L. Zhou F. Liu Q. Ruan Z. Dietary chlorogenic acid alleviates high-fat diet-induced steatotic liver disease by regulating metabolites and gut microbiota Int. J. Food Sci. Nutr. 2024 75 369 384 10.1080/09637486.2024.2318590 38389248 · DOI
  100. [103]Yuan G. Tan M. Chen X. Punicic acid ameliorates obesity and liver steatosis by regulating gut microbiota composition in mice Food Funct. 2021 12 7897 7908 10.1039/D1FO01152A 34241611 · DOI
  101. [104]Zhou C. Zhou X. Wen Z. Liu L. Yang Z. Yang L. Li P. Guo X. Mei X. Compound Fu brick tea modifies the intestinal microbiome composition in high-fat diet-induced obesity mice Food Sci. Nutr. 2020 8 5508 5520 10.1002/fsn3.1850 33133553 PMC7590332 · DOI
  102. [105]Zhang M. Yao M. Jia A. Shi Y. Bai X. Liu X. Cui T. Liu X. Liu C. Hypolipidemic effect of soluble dietary fibers prepared from Asparagus officinalis and their effects on the modulation of intestinal microbiota Food Sci. Biotechnol. 2021 30 1721 1731 10.1007/s10068-021-01001-y 34925946 PMC8639855 · DOI

Cited by

Sorted by citations

Authors
Zhu, Y., Chen, B., Zhang, X., Akbar, M. T., Wu, T., Zhang, Y., Zhi, L., & Shen, Q.
Venue
Nutrients
Publisher
MDPI AG
Published
2024-08-12
Volume
16
Issue
16
Pages
2660
ISSN
2072-6643
Cited by
604
References
3
Language
en
Funders
China Agriculture Research System (CARS-06–14.5)

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