Cited by 21Pharmacogenetics and Drug MetabolismBerberine and alkaloids researchDrug Transport and Resistance Mechanisms

Quasi-Irreversible Inhibition of CYP2D6 by Berberine

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Kim, Ha Gyeong, Lee, Han Sol, Jeon, Jang Su, Choi, Young Jae, Choi, Yeon Jung, Yoo, So-Yeol, Kim, Eun-yeong, Lee, Kiho +7 more·2020·Pharmaceutics

Abstract

In our previous study, Hwang-Ryun-Hae-Dok-Tang, which contains berberine (BBR) as a main active ingredient, inhibited cytochrome P450 (CYP) 2D6 in a quasi-irreversible manner. However, no information is available on the detailed mechanism of BBR-induced CYP2D6 inhibition. Thus, the present study aimed to characterize the inhibition mode and kinetics of BBR and its analogues against CYP2D6 using pooled human liver microsomes (HLM). BBR exhibited selective quasi-irreversible inhibition of CYP2D6 with inactivation rate constant (kinact) of 0.025 min−1, inhibition constant (KI) of 4.29 µM, and kinact/KI of 5.83 mL/min/µmol. In pooled HLM, BBR was metabolized to thalifendine (TFD), demethyleneberberine (DMB), M1 (proposed as demethylene-TFD), and to a lesser extent berberrubine (BRB), showing moderate metabolic stability with a half-life of 35.4 min and a microsomal intrinsic clearance of 7.82 µL/min/mg protein. However, unlike BBR, those metabolites (i.e., TFD, DMB, and BRB) were neither selective nor potent inhibitors of CYP2D6, based on comparison of half-maximal inhibitory concentration (IC50). Notably, TFD, but not DMB, exhibited metabolism-dependent CYP2D6 inhibition as in the case of BBR, which suggests that methylenedioxybenzene moiety of BBR may play a critical role in the quasi-irreversible inhibition. Moreover, the metabolic clearance of nebivolol (β-blocker; CYP2D6 substrate) was reduced in the presence of BBR. The present results warrant further evaluation of BBR–drug interactions in clinical situations.

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Crossref · 10.3390/pharmaceutics12100916

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  • Berberine inhibits CYP2D6 and CYP2C9 quasi-irreversibly through a metabolite-intermediate complex.

    “with CYP2D6/CYP2C9 inhibition that is quasi-irreversible through a metabolite-intermediate complex”

    From Berberine-Drug Interactions: Mechanisms, Clinical Relevance and Risk Stratification-A Narrative Review (2026) · cites this paper as [59]

    Results §3.4 and the Discussion support quasi-irreversible CYP2D6 inhibition by berberine and link it to a possible metabolite-intermediate complex. But Results §3.1 explicitly says CYP2C9 was not markedly inhibited by berberine; the paper does not establish the claimed mechanism for CYP2C9. (LLM, conf=0.90)

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  • How long CYP2D6 activity stays suppressed in humans after berberine is stopped has not been measured; the clinical duration of this component is inferred from the in vitro mechanism and not observed.

    “What nobody has measured is how long CYP2D6 activity stays suppressed in humans after berberine is stopped, which means the clinical duration of this component is inferred from the in vitro mechanism and not observed [35,59].”

    From Berberine-Drug Interactions: Mechanisms, Clinical Relevance and Risk Stratification-A Narrative Review (2026) · cites this paper as [59]

    The Results (section 3.4; page unavailable) measure reversibility in human liver microsomes, not how long CYP2D6 suppression persists in people after berberine is stopped. The Discussion and Conclusions call for further clinical evaluation, supporting the distinction between the observed in vitro mechanism and unobserved clinical duration. The paper does not establish the broader assertion that nobody has measured post-discontinuation suppression in humans. (LLM, conf=0.83)

    Experimental — accuracy not yet measured
  • Berberine and its metabolites are themselves substrates and/or inhibitors of several enzymes and transporters, broadening the spectrum of interactions.

    “Berberine and its metabolites (berberrubine, thalifendine, demethyleneberberine, and jatrorrhizine), formed predominantly by CYP1A2, CYP2D6 and CYP3A4, are themselves substrates and/or inhibitors of several enzymes and transporters, which broadens the spectrum of interactions [59,60,61].”

    From Berberine-Drug Interactions: Mechanisms, Clinical Relevance and Risk Stratification-A Narrative Review (2026) · cites this paper as [59]

    The Introduction (page not specified) identifies the four metabolites and reports that CYP1A2, CYP2D6 and CYP3A4 metabolize berberine to thalifendine and demethyleneberberine. Results §3.1 and §3.3 (pages not specified) show that berberine inhibits CYP2D6 and its named metabolites inhibit several CYP enzymes. The paper does not establish that berberine or those metabolites are substrates or inhibitors of transporters, so that part of the attributed claim is unsupported. (LLM, conf=0.88)

    Experimental — accuracy not yet measured
  • Chronic, repeated administration of berberine lets inhibitory effects accumulate and carries a time-dependent component of CYP2D6 inhibition.

    “Chronic, repeated administration, typical of supplement use, lets these inhibitory effects accumulate, and it carries a time-dependent component of CYP2D6 inhibition that we characterize in Section 2.2.1 [35,59].”

    From Berberine-Drug Interactions: Mechanisms, Clinical Relevance and Risk Stratification-A Narrative Review (2026) · cites this paper as [59]

    The Discussion reports time-dependent, metabolism-dependent CYP2D6 inhibition by berberine. The Conclusions say repeated administration of a quasi-irreversible inhibitor *can* lead to its accumulation, but do not show that chronic berberine use causes inhibitory effects to accumulate in people. That part of the claim presents a possibility as an established effect. (LLM, conf=0.86)

    Experimental — accuracy not yet measured
  • The contribution of quasi-irreversible CYP2D6 inhibition, the balance between CYP3A4 inhibition and PXR-mediated induction, the concentration-response relationship for that induction and the time at which it begins, and the duration of both effects after berberine is stopped all need to be quantified in humans; at present each is extrapolated from in vitro systems.

    “The contribution of quasi-irreversible CYP2D6 inhibition, the balance between CYP3A4 inhibition and PXR-mediated induction, the concentration–response relationship for that induction and the time at which it begins, and the duration of both effects after berberine is stopped, all need to be quantified in humans; at present each is extrapolated from in vitro systems [59,75].”

    From Berberine-Drug Interactions: Mechanisms, Clinical Relevance and Risk Stratification-A Narrative Review (2026) · cites this paper as [59]

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Authors
Kim, H. G., Lee, H. S., Jeon, J. S., Choi, Y. J., Choi, Y. J., Yoo, S.-Y., Kim, E.-Y., Lee, K., Park, I., Na, M., Park, H.-J., Cho, S.-W., Kim, J.-H., Lee, J.-Y., & Kim, S. K.
Affiliations
  • Chungnam National University (KR)
  • Korea University (KR)
  • Korea Institute of Toxicology (KR)
  • Yonsei University (KR)
Corresponding author
  • Lee, Jae-Young
  • Kim, Sang Kyum
Venue
Pharmaceutics
Publisher
MDPI AG
Published
2020-09-24
Volume
12
Issue
10
Pages
916
ISSN
1999-4923 (ISSN-L)
OpenAlex
W3088303855
Cited by
21
References
47
Citations by year
2026: 4 · 2025: 4 · 2024: 4 · 2023: 2 · 2022: 2 · 2021: 5
FWCI
1.99
Type
journal article
Language
en
Open access
Locations
  • Pharmaceutics (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
  • Seoul National University Open Repository (Seoul National University) (submittedVersion)
Funders
National Research Foundation of Korea (NRF-2018M3A9H1021640, NRF-2018R1C1B6005379)
Topics
  • Life Sciences › Pharmacology, Toxicology and Pharmaceutics › Pharmacology › Pharmacogenetics and Drug Metabolism
  • Health Sciences › Medicine › Pharmacology › Berberine and alkaloids research
  • Health Sciences › Medicine › Oncology › Drug Transport and Resistance Mechanisms
Keywords
berberine, CYP2D6 inhibition, berberrubine, drug metabolism, drug-drug interactions, nebivolol, cytochrome P450, herbal medicine

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