Quasi-Irreversible Inhibition of CYP2D6 by Berberine
Open accessAbstract
In our previous study, Hwang-Ryun-Hae-Dok-Tang, which contains berberine (BBR) as a main active ingredient, inhibited cytochrome P450 (CYP) 2D6 in a quasi-irreversible manner. However, no information is available on the detailed mechanism of BBR-induced CYP2D6 inhibition. Thus, the present study aimed to characterize the inhibition mode and kinetics of BBR and its analogues against CYP2D6 using pooled human liver microsomes (HLM). BBR exhibited selective quasi-irreversible inhibition of CYP2D6 with inactivation rate constant (kinact) of 0.025 min−1, inhibition constant (KI) of 4.29 µM, and kinact/KI of 5.83 mL/min/µmol. In pooled HLM, BBR was metabolized to thalifendine (TFD), demethyleneberberine (DMB), M1 (proposed as demethylene-TFD), and to a lesser extent berberrubine (BRB), showing moderate metabolic stability with a half-life of 35.4 min and a microsomal intrinsic clearance of 7.82 µL/min/mg protein. However, unlike BBR, those metabolites (i.e., TFD, DMB, and BRB) were neither selective nor potent inhibitors of CYP2D6, based on comparison of half-maximal inhibitory concentration (IC50). Notably, TFD, but not DMB, exhibited metabolism-dependent CYP2D6 inhibition as in the case of BBR, which suggests that methylenedioxybenzene moiety of BBR may play a critical role in the quasi-irreversible inhibition. Moreover, the metabolic clearance of nebivolol (β-blocker; CYP2D6 substrate) was reduced in the presence of BBR. The present results warrant further evaluation of BBR–drug interactions in clinical situations.
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Berberine inhibits CYP2D6 and CYP2C9 quasi-irreversibly through a metabolite-intermediate complex.
“with CYP2D6/CYP2C9 inhibition that is quasi-irreversible through a metabolite-intermediate complex”
From Berberine-Drug Interactions: Mechanisms, Clinical Relevance and Risk Stratification-A Narrative Review (2026) · cites this paper as [59]
Results §3.4 and the Discussion support quasi-irreversible CYP2D6 inhibition by berberine and link it to a possible metabolite-intermediate complex. But Results §3.1 explicitly says CYP2C9 was not markedly inhibited by berberine; the paper does not establish the claimed mechanism for CYP2C9. (LLM, conf=0.90)
Experimental — accuracy not yet measuredHow long CYP2D6 activity stays suppressed in humans after berberine is stopped has not been measured; the clinical duration of this component is inferred from the in vitro mechanism and not observed.
“What nobody has measured is how long CYP2D6 activity stays suppressed in humans after berberine is stopped, which means the clinical duration of this component is inferred from the in vitro mechanism and not observed [35,59].”
From Berberine-Drug Interactions: Mechanisms, Clinical Relevance and Risk Stratification-A Narrative Review (2026) · cites this paper as [59]
The Results (section 3.4; page unavailable) measure reversibility in human liver microsomes, not how long CYP2D6 suppression persists in people after berberine is stopped. The Discussion and Conclusions call for further clinical evaluation, supporting the distinction between the observed in vitro mechanism and unobserved clinical duration. The paper does not establish the broader assertion that nobody has measured post-discontinuation suppression in humans. (LLM, conf=0.83)
Experimental — accuracy not yet measuredBerberine and its metabolites are themselves substrates and/or inhibitors of several enzymes and transporters, broadening the spectrum of interactions.
“Berberine and its metabolites (berberrubine, thalifendine, demethyleneberberine, and jatrorrhizine), formed predominantly by CYP1A2, CYP2D6 and CYP3A4, are themselves substrates and/or inhibitors of several enzymes and transporters, which broadens the spectrum of interactions [59,60,61].”
From Berberine-Drug Interactions: Mechanisms, Clinical Relevance and Risk Stratification-A Narrative Review (2026) · cites this paper as [59]
The Introduction (page not specified) identifies the four metabolites and reports that CYP1A2, CYP2D6 and CYP3A4 metabolize berberine to thalifendine and demethyleneberberine. Results §3.1 and §3.3 (pages not specified) show that berberine inhibits CYP2D6 and its named metabolites inhibit several CYP enzymes. The paper does not establish that berberine or those metabolites are substrates or inhibitors of transporters, so that part of the attributed claim is unsupported. (LLM, conf=0.88)
Experimental — accuracy not yet measuredChronic, repeated administration of berberine lets inhibitory effects accumulate and carries a time-dependent component of CYP2D6 inhibition.
“Chronic, repeated administration, typical of supplement use, lets these inhibitory effects accumulate, and it carries a time-dependent component of CYP2D6 inhibition that we characterize in Section 2.2.1 [35,59].”
From Berberine-Drug Interactions: Mechanisms, Clinical Relevance and Risk Stratification-A Narrative Review (2026) · cites this paper as [59]
The Discussion reports time-dependent, metabolism-dependent CYP2D6 inhibition by berberine. The Conclusions say repeated administration of a quasi-irreversible inhibitor *can* lead to its accumulation, but do not show that chronic berberine use causes inhibitory effects to accumulate in people. That part of the claim presents a possibility as an established effect. (LLM, conf=0.86)
Experimental — accuracy not yet measuredThe contribution of quasi-irreversible CYP2D6 inhibition, the balance between CYP3A4 inhibition and PXR-mediated induction, the concentration-response relationship for that induction and the time at which it begins, and the duration of both effects after berberine is stopped all need to be quantified in humans; at present each is extrapolated from in vitro systems.
“The contribution of quasi-irreversible CYP2D6 inhibition, the balance between CYP3A4 inhibition and PXR-mediated induction, the concentration–response relationship for that induction and the time at which it begins, and the duration of both effects after berberine is stopped, all need to be quantified in humans; at present each is extrapolated from in vitro systems [59,75].”
From Berberine-Drug Interactions: Mechanisms, Clinical Relevance and Risk Stratification-A Narrative Review (2026) · cites this paper as [59]
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Experimental — accuracy not yet measured
Low systemic exposure to berberine coexists with high local concentrations that inhibit CYP3A4/CYP2D6/CYP2C9, can induce CYP3A4 transcriptionally, and modulate P-glycoprotein and organic cation transporters.
“Low systemic exposure coexists with high local concentrations that inhibit CYP3A4/CYP2D6/CYP2C9, and can even induce CYP3A4 transcriptionally, and that modulate P-glycoprotein and organic cation transporters [35,59,65]”
From Berberine-Drug Interactions: Mechanisms, Clinical Relevance and Risk Stratification-A Narrative Review (2026) · cites this paper as [59]
The Results (section 3.1; page not available) show that berberine inhibits CYP2D6 in human liver microsomes. They also say CYP2C9 and CYP3A4 were not markedly inhibited, contrary to that part of the claim. The passages found do not establish the low-systemic/high-local exposure contrast, transcriptional CYP3A4 induction, or modulation of P-glycoprotein and organic cation transporters. (LLM, conf=0.89)
Experimental — accuracy not yet measuredCYP2D6 inhibition by berberine is quasi-irreversible, develops in a time-, concentration-, and NADPH-dependent manner, and is attributed to formation of a metabolite-intermediate complex with the heme iron.
“CYP2D6 inhibition is quasi-irreversible in the strict pharmacological sense rather than simply long-lasting, and the primary source describes it as such: the effect develops in a time-, concentration-, and NADPH-dependent manner and is attributed to formation of a metabolite-intermediate complex (MIC) with the heme iron [59].”
From Berberine-Drug Interactions: Mechanisms, Clinical Relevance and Risk Stratification-A Narrative Review (2026) · cites this paper as [59]
Temporal separation of administration reduces, but does not eliminate, absorption-level interactions and has no effect on systemic enzyme inhibition.
“Third, temporal separation of administration reduces, but does not eliminate, absorption-level interactions and has no effect on systemic enzyme inhibition [54,59].”
From Berberine-Drug Interactions: Mechanisms, Clinical Relevance and Risk Stratification-A Narrative Review (2026) · cites this paper as [59]
The Conclusions (page unavailable) report quasi-irreversible CYP2D6 inhibition by berberine, but do not address the effect of separating administration times. Searches for dosing intervals and absorption-level interactions found no passage testing or discussing whether temporal separation reduces absorption interactions or leaves enzyme inhibition unchanged. (LLM, conf=0.76)
Experimental — accuracy not yet measured
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- Authors
- Kim, H. G., Lee, H. S., Jeon, J. S., Choi, Y. J., Choi, Y. J., Yoo, S.-Y., Kim, E.-Y., Lee, K., Park, I., Na, M., Park, H.-J., Cho, S.-W., Kim, J.-H., Lee, J.-Y., & Kim, S. K.
- Affiliations
- Chungnam National University (KR)
- Korea University (KR)
- Korea Institute of Toxicology (KR)
- Yonsei University (KR)
- Corresponding author
- Lee, Jae-Young
- Kim, Sang Kyum
- ORCID
- Venue
- Pharmaceutics
- Publisher
- MDPI AG
- Published
- 2020-09-24
- Volume
- 12
- Issue
- 10
- Pages
- 916
- ISSN
- 1999-4923 (ISSN-L)
- PMC
- PMC7600264
- OpenAlex
- W3088303855
- Cited by
- 21
- References
- 47
- Citations by year
- 2026: 4 · 2025: 4 · 2024: 4 · 2023: 2 · 2022: 2 · 2021: 5
- FWCI
- 1.99
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Pharmaceutics (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Seoul National University Open Repository (Seoul National University) (submittedVersion)
- Funders
- National Research Foundation of Korea (NRF-2018M3A9H1021640, NRF-2018R1C1B6005379)
- Topics
- Life Sciences › Pharmacology, Toxicology and Pharmaceutics › Pharmacology › Pharmacogenetics and Drug Metabolism
- Health Sciences › Medicine › Pharmacology › Berberine and alkaloids research
- Health Sciences › Medicine › Oncology › Drug Transport and Resistance Mechanisms
- Keywords
- berberine, CYP2D6 inhibition, berberrubine, drug metabolism, drug-drug interactions, nebivolol, cytochrome P450, herbal medicine
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Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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