Cited by 137T-cell and B-cell ImmunologyPsoriasis: Treatment and PathogenesisGenomics and Chromatin Dynamics

IFN Regulatory Factor 4 Regulates the Expression of a Subset of Th2 Cytokines

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Ahyi, Ayele-Nati N, Chang, Hua-Chen, Dent, Alexander L, Nutt, Stephen L, Kaplan, Mark H·2009·The Journal of Immunology

Abstract

Th2 cells can be subdivided into subpopulations depending on the level of a cytokine and the subsets of cytokines they produce. We have recently identified the ETS family transcription factor PU.1 as regulating heterogeneity in Th2 populations. To define additional factors that might contribute to Th2 heterogeneity, we examined the PU.1 interacting protein IFN-regulatory factor (IRF)4. When Th2 cells are separated based on levels of IL-10 secretion, IRF4 expression segregates into the subset of Th2 cells expressing high levels of IL-10. Infection of total Th2 cells, and IL-10 nonsecreting cells, with retrovirus-expressing IRF4, resulted in increased IL-4 and IL-10 expression, no change in IL-5 or IL-13 production and decreased Il9 transcription. Transfection of an IRF4-specific small interfering RNA into Th2 cells decreases IL-10 production. IRF4 directly binds the Il10 gene as evidenced by chromatin immunoprecipitation assay, and regulates Il10 control elements in a reporter assay. IRF4 interacts with PU.1, and in PU.1-deficient T cells there was an increase in IRF4 binding to the Il10 gene, and in the ability of IRF4 to induce IL-10 production compared with wild-type cells and Il10 promoter activity in a reporter assay. Further heterogeneity of IRF4 expression was observed in Th2 cells analyzed for expression of multiple Th2 cytokines. Thus, IRF4 promotes the expression of a subset of Th2 cytokines and contributes to Th2 heterogeneity.

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Crossref · 10.4049/jimmunol.0803302

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  • PU.1 functions, at least in part, by limiting the ability of GATA-3 and IRF4 to interact with cytokine loci targets.

    “PU.1 functions, at least in part, by limiting the ability of GATA-3 and IRF4 to interact with cytokine loci targets7–9.”

    From The transcription factor PU.1 is required for the development of IL-9-producing T cells and allergic inflammation (2010) · cites this paper as [9]

    The Results section, “Functional interactions of PU.1 and IRF4” (page unavailable), reports greater IRF4 binding at the Il10 promoter in PU.1-deficient Th2 cells, with a similar trend at the Il4 promoter. It also shows that PU.1 interacts with GATA-3, but does not show that PU.1 limits GATA-3 binding to cytokine loci. (LLM, conf=0.87)

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  1. [1]Murphy E Shibuya K Hosken N Openshaw P Maino V Davis K Murphy K O’Garra A Reversibility of T helper 1 and 2 populations is lost after long-term stimulation J. Exp. Med 1996 183 901 913 8642294 PMC2192360
  2. [3]Murphy KM Ouyang W Farrar JD Yang J Ranganath S Asnagli H Afkarian M Murphy TL Signaling and Transcription in T Helper Development Annu Rev Immunol 2000 18 451 494 10837066
  3. [4]Bucy RP Karr L Huang G Li J Carter D Honjo K Lemons JA Murphy KM Weaver CT Single Cell Analysis of Cytokine Gene Coexpression During CD4+ T-Cell Phenotype Development Proc Natl Acad Sci 1995 92 7565 7569 7638231 PMC41380
  4. [5]Jankovic D Kullberg MC Noben-Trauth N Caspar P Paul WE Sher A Single Cell Analysis Reveals That IL-4 Receptor/Stat6 Signaling Is Not Required for the In Vivo or In Vitro Development of CD4+ Lymphocytes with a Th2 Cytokine Profile J Immunol 2000 164 3047 3055 10706693
  5. [6]Karulin AY Hesse MD Tary-Lehmann M Lehmann PV Single-Cytokine-Producing CD4 Memory Cells Predominate in Type 1 and Type 2 Immunity J Immunol 2000 164 1862 1872 10657635
  6. [7]Guo L Hu-Li J Zhu J Watson CJ Difilippantonio MJ Pannetier C Paul WE In TH2 cells the Il4 gene has a series of accessibility states associated with distinctive probabilities of IL-4 production Proc Natl Acad Sci 2002 99 10623 10628 12149469 PMC124993
  7. [8]Chang H-C Zhang S Thieu VT Slee RB Bruns HA Laribee RN Klemsz MJ Kaplan MH PU.1 Expression Delineates Heterogeneity in Primary Th2 Cells Immunity 2005 22 693 703 15963784
  8. [10]Escalante CR Shen L Escalante MC Brass AL Edwards TA Singh H Aggarwal AK Crystallization and characterization of PU.1/IRF-4/DNA ternary complex J Struct Biol 2002 139 55 59 12372320
  9. [12]Yee AA Yin P Siderovski DP Mak TW Litchfield DW Arrowsmith CH Cooperative interaction between the DNA-binding domains of PU.1 and IRF4 J Mol Biol 1998 279 1075 9642085
  10. [13]Lohoff M Mittrücker H-W Prechtl S Bischof S Sommer F Kock S Ferrick DA Duncan GS Gessner A Mak TW Dysregulated T helper cell differentiation in the absence of interferon regulatory factor 4 Proc Natl Acad Sci 2002 99 11808 11812 12189207 PMC129350
  11. [14]Brustle A Heink S Huber M Rosenplanter C Stadelmann C Yu P Arpaia E Mak TW Kamradt T Lohoff M The development of inflammatory TH-17 cells requires interferon-regulatory factor 4 Nat Immunol 2007 8 958 966 17676043
  12. [15]Zheng Y Chaudhry A Kas A deRoos P Kim JM Chu T-T Corcoran L Treuting P Klein U Rudensky AY Regulatory T-cell suppressor program co-opts transcription factor IRF4 to control TH2 responses Nature Advance Publication 2009 doi:10.1038 PMC2864791 19182775
  13. [16]Honma K Kimura D Tominaga N Miyakoda M Matsuyama T Yui K Interferon regulatory factor 4 differentially regulates the production of Th2 cytokines in naive vs. effector/memory CD4+ T cells Proc Natl Acad Sci 2008 105 15890 15895 18836070 PMC2572975
  14. [17]Hu C-M Jang SY Fanzo JC Pernis AB Modulation of T cell cytokine production by interferon regulatory factor-4 (IRF-4) J Biol Chem 2002 277 49238 49246 12374808
  15. [18]Rengarajan J Mowen KA McBride KD Smith ED Singh H Glimcher LH Interferon Regulatory Factor 4 (IRF4) Interacts with NFATc2 to Modulate Interleukin 4 Gene Expression J Exp Med 2002 195 1003 1012 11956291 PMC2193700
  16. [19]Matsuyama T Grossman A Mittrucker HW Siderovski DP Kiefer F Kawakami T Richardson CD Taniguchi T Yoshinaga SK Mak TW Molecular cloning of LSIRF, a lymphoid-specific member of the interferon regulatory factor family that binds the interferon- stimulated response element (ISRE) Nucleic Acid Res 1995 23 2127 2136 7541907 PMC306999
  17. [20]Yamagata T Nishida J Tanaka S Sakai R Mitani K Yoshida M Taniguchi T Yazaki Y Hirai H A novel interferon regulatory factor family transcription factor, ICSAT/Pip/LSIRF, that negatively regulates the activity of interferon- regulated genes Mol Cell Biol 1996 16 1283 1294 8657101 PMC231112
  18. [22]Mathur AN Chang H-C Zisoulis DG Stritesky GL Yu Q O’Malley JT Kapur R Levy DE Kansas GS Kaplan MH Stat3 and Stat4 Direct Development of IL-17-Secreting Th Cells J Immunol 2007 178 4901 4907 17404271
  19. [23]Chang H-C Zhang S Oldham I Naeger L Hoey T Kaplan MH STAT4 Requires the N-terminal Domain for Efficient Phosphorylation J Biol Chem 2003 278 32471 32477 12805384
  20. [25]O’Sullivan A Chang H-C Yu Q Kaplan MH STAT4 Is Required for Interleukin-12-induced Chromatin Remodeling of the CD25 Locus J Biol Chem 2004 279 7339 7345 14660657
  21. [26]Chang H-D Helbig C Tykocinski L Kreher S Koeck J Niesner U Radbruch A Expression of IL-10 in Th memory lymphocytes is conditional on IL-12 or IL-4, unless the IL-10 gene is imprinted by GATA-3 Eur J Immunol 2007 37 807 817 17304625
  22. [27]Yao Y Li W Kaplan MH Chang CH Interleukin (IL)-4 inhibits IL-10 to promote IL-12 production by dendritic cells J Exp Med 2005 201 1899 1903 15967820 PMC2212025
  23. [28]Wang Z-Y Sato H Kusam S Sehra S Toney LM Dent AL Regulation of IL-10 Gene Expression in Th2 Cells by Jun Proteins J Immunol 2005 174 2098 2105 15699140
  24. [30]McKercher SR Lombardo CR Bobkov A Jia X Assa-Munt N Identification of a PU.1-IRF4 protein interaction surface predicted by chemical exchange line broadening Proc Natl Acad Sci 2003 100 511 516 12518046 PMC141026
  25. [31]Gross P Yee AA Arrowsmith CH Macgregor RB Quantitative Hydroxyl Radical Footprinting Reveals Cooperative Interactions between DNA-Binding Subdomains of PU.1 and IRF4 Biochem 1998 37 9802 9811 9657694
  26. [32]Baguet A Bix M Chromatin landscape dynamics of the Il4-Il13 locus during T helper 1 and 2 development Proc Natl Acad Sci 2004 101 11410 11415 15272080 PMC509214
  27. [33]Avni O Lee D Macian F Szabo SJ Glimcher LH Rao A Th cell differentiation is accompanied by dynamic changes in histone acetylation of cytokine genes Nat Immunol 2002 3 643 651 12055628
  28. [34]Shoemaker J Saraiva M O’Garra A GATA-3 Directly Remodels the IL-10 Locus Independently of IL-4 in CD4+ T Cells J Immunol 2006 176 3470 3479 16517715
  29. [35]Brightbill HD Plevy SE Modlin RL Smale ST A Prominent Role for Sp1 During Lipopolysaccharide-Mediated Induction of the IL-10 Promoter in Macrophages J Immunol 2000 164 1940 1951 10657644
  30. [36]Lohning M Richter A Stamm T Hu-Li J Assenmacher M Paul WE Radbruch A Establishment of memory for IL-10 expression in developing T helper 2 cells requires repetitive IL-4 costimulation and does not impair proliferation Proc Natl Acad Sci 2003 100 12307 12312 14514890 PMC218754
  31. [37]Gerosa F Paganin C Peritt D Paiola F Scupoli MT Aste-Amezaga M Frank I Trinchieri G Interleukin-12 primes human CD4 and CD8 T cell clones for high production of both interferon-gamma and interleukin-10 J Exp Med 1996 183 2559 2569 8676077 PMC2192598
  32. [38]Mo C Chearwae W O’Malley JT Adams SM Kanakasabai S Walline CC Stritesky GL Good SR Perumal NB Kaplan MH Bright JJ Stat4 Isoforms Differentially Regulate Inflammation and Demyelination in Experimental Allergic Encephalomyelitis J Immunol 2008 181 5681 5690 18832727 PMC2581484
  33. [39]Grenningloh R Kang BY Ho IC Ets-1, a functional cofactor of T-bet, is essential for Th1 inflammatory responses J. Exp. Med 2005 201 615 626 15728239 PMC2213045
  34. [40]Veldhoen M Uyttenhove C van Snick J Helmby H Westendorf A Buer J Martin B Wilhelm C Stockinger B Transforming growth factor-[beta] ‘reprograms’ the differentiation of T helper 2 cells and promotes an interleukin 9-producing subset Nat Immunol 2008 9 1341 1346 18931678
  35. [42]Temann U-A Ray P Flavell RA Pulmonary overexpression of IL-9 induces Th2 cytokine expression, leading to immune pathology J Clin Invest 2002 109 29 39 11781348 PMC150821
  36. [43]Kim JI Ho IC Grusby MJ Glimcher LH The transcription factor c-Maf controls the production of interleukin-4 but not other Th2 cytokines Immunity 1999 10 745 751 10403649
  37. [44]Zhao X Zheng B Huang Y Yang D Katzman S Chang C Fowell D Zeng WP Interaction between GATA-3 and the Transcriptional Coregulator Pias1 Is Important for the Regulation of Th2 Immune Responses J Immunol 2007 179 8297 8304 18056374
  38. [45]Brunner C Sindrilaru A Girkontaite I Fischer K-D Sunderkötter C Wirth T BOB.1/OBF.1 controls the balance of Th1 and Th2 immune responses EMBO J 2007 26 3191 3202 17568779 PMC1914090

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Authors
Ahyi, A.-N. N., Chang, H.-C., Dent, A. L., Nutt, S. L., & Kaplan, M. H.
Affiliations
  • Indiana University Indianapolis (US)
  • Department of Pediatrics, Herman B. Wells Center for Pediatric Research
  • Walter and Eliza Hall Institute of Medical Research (AU)
Venue
The Journal of Immunology
Published
2009-08-01
Volume
183
Issue
3
Pages
1598-1606
ISSN
  • 0022-1767 (ISSN-L)
  • 1550-6606
OpenAlex
W2123298166
Cited by
137
References
7
Citations by year
2026: 1 · 2025: 4 · 2024: 5 · 2023: 5 · 2022: 5 · 2021: 5 · 2020: 9 · 2019: 8 · 2018: 6 · 2017: 10 · 2016: 7 · 2015: 8 · 2014: 14 · 2013: 17 · 2012: 9
FWCI
4.75
Type
journal article
Language
en
Open access
Locations
  • The Journal of Immunology (publishedVersion)
  • PubMed (publishedVersion)
  • Europe PMC (PubMed Central) (acceptedVersion)
  • PubMed Central (acceptedVersion)
  • IUScholarWorks (Indiana University) (submittedVersion)
Funders
National Institute of Allergy and Infectious Diseases (AI057459, R01AI057459)
Topics
  • Life Sciences › Immunology and Microbiology › Immunology › T-cell and B-cell Immunology
  • Life Sciences › Immunology and Microbiology › Immunology › Psoriasis: Treatment and Pathogenesis
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
Keywords
Th2 cells, IL-10, IL-4, IL-13, IL-5, IL-9, PU.1, ETS transcription factors, cytokine gene regulation, transcriptional regulation, T cell subsets
MeSH terms
Interferon Regulatory Factor-4, Proto-Oncogene Protein Spi-1, Animals, Gene Expression Regulation, Protein Binding, Proto-Oncogene Proteins, Trans-Activators, Cytokines, Interleukin-10, Th2 Cells, Interferon Regulatory Factors, Mice

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