Sepsis and the diverse organ-gastrointestinal tract axis
Open accessAbstract
Sepsis remains a leading cause of morbidity and mortality worldwide, driven by a dysregulated host immune response to infection that culminates in multi-organ dysfunction. Recent advances highlight the gut microbiota's pivotal role in modulating immune responses and influencing the pathophysiology of sepsis through the organ-gastrointestinal tract axis. This review synthesizes current evidence on the bidirectional interplay between gut dysbiosis and the dysfunction of major organ systems—liver, lungs, kidneys, brain, and heart—during sepsis. We explore how gut-derived factors such as microbial translocation, endotoxins, and altered metabolite production exacerbate systemic inflammation and organ injury. In particular, we emphasize the roles of short-chain fatty acids, uremic toxins, bile acids, and trimethylamine-N-oxide in mediating immune dysfunction across the gut-organ axes. Therapeutic strategies targeting the gut microbiota— including prebiotics, probiotics, synbiotics, and fecal microbiota transplantation— show promise in preclinical and early clinical settings. However, challenges related to patient heterogeneity, safety, and the lack of precise biomarkers persist. This review consolidates disparate findings to underscore the gut as a central modulator in sepsis and advocates for microbiota-based interventions as adjunctive therapies in sepsis management.
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High plasma TMAO is independently associated with increased risk of heart failure, arrhythmias, and 28-day mortality in septic patients.
“High plasma TMAO is independently associated with increased risk of heart failure, arrhythmias, and 28-day mortality in septic patients (Rastogi et al., 2022; Wang et al., 2025).”
From Progress on the correlation between sepsis and gut microbiota: a narrative review (2026) · cites this paper as Wang et al., 2025
The GUT-HEART AXIS section (page unavailable) associates TMAO with adverse cardiovascular outcomes and says elevated levels during sepsis may worsen septic cardiomyopathy. It does not establish an independent association with heart failure, arrhythmias, or 28-day mortality; it discusses arrhythmias and mortality in connection with inflammation and altered cardiac regulation, not TMAO. (LLM, conf=0.88)
Experimental — accuracy not yet measuredSepsis-associated AKI occurs in up to 50% of septic patients and independently increases mortality.
“Sepsis-associated AKI occurs in up to 50% of septic patients and independently increases mortality (Wang et al., 2025).”
From Progress on the correlation between sepsis and gut microbiota: a narrative review (2026) · cites this paper as Wang et al., 2025
The GUT-KIDNEY AXIS section (page unavailable) discusses sepsis-associated AKI, and SEPSIS PATHOPHYSIOLOGY AND SYSTEMIC IMPACTS (page unavailable) identifies AKI among organ dysfunctions that contribute to sepsis mortality. Neither passage gives an incidence of up to 50% or says AKI independently increases mortality. (LLM, conf=0.86)
Experimental — accuracy not yet measuredHigher indoxyl sulfate levels correlate with more severe AKI and prolonged renal replacement therapy.
“Higher indoxyl sulfate levels correlate with more severe AKI and prolonged renal replacement therapy (Wang et al., 2025).”
From Progress on the correlation between sepsis and gut microbiota: a narrative review (2026) · cites this paper as Wang et al., 2025
The GUT-KIDNEY AXIS section implicates indoxyl sulfate in AKI progression and says these metabolites exacerbate renal injury. It does not report a correlation between measured indoxyl sulfate levels and AKI severity or prolonged renal replacement therapy; searches for those associations found no supporting passage. (LLM, conf=0.86)
Experimental — accuracy not yet measuredFecal SCFA levels are significantly lower in septic patients who develop AKI than in those without AKI.
“Fecal SCFA levels are significantly lower in septic patients who develop AKI than in those without AKI (Wang et al., 2025).”
From Progress on the correlation between sepsis and gut microbiota: a narrative review (2026) · cites this paper as Wang et al., 2025
The GUT-KIDNEY AXIS section says SCFA production falls during sepsis and links the loss of these metabolites to kidney injury. It does not report fecal SCFA measurements, compare septic patients with and without AKI, or establish a statistically significant difference between those groups. (LLM, conf=0.84)
Experimental — accuracy not yet measuredIn septic mice, gut dysbiosis leads to splenic atrophy, loss of marginal zone B cells, and decreased production of IgM and opsonizing antibodies.
“In septic mice, gut dysbiosis leads to splenic atrophy, loss of marginal zone B cells, and decreased production of IgM and opsonizing antibodies.”
From Progress on the correlation between sepsis and gut microbiota: a narrative review (2026) · cites this paper as Wang et al., 2025
The Sepsis Pathophysiology and Systemic Impacts section links gut dysbiosis to systemic inflammation and immune dysregulation, but does not address splenic atrophy, marginal zone B cells, IgM, or opsonizing antibodies in septic mice. Searches for those terms and for spleen-related findings found no passage supporting the specific claim. (LLM, conf=0.74)
Experimental — accuracy not yet measured
Autopsy studies of septic patients show profound splenic lymphoid depletion, and low splenic volume on CT is associated with a higher risk of secondary nosocomial infections.
“Autopsy studies of septic patients show profound splenic lymphoid depletion, and low splenic volume on CT is associated with a higher risk of secondary nosocomial infections (Wang et al., 2025).”
From Progress on the correlation between sepsis and gut microbiota: a narrative review (2026) · cites this paper as Wang et al., 2025
The SEPSIS PATHOPHYSIOLOGY AND SYSTEMIC IMPACTS section says immune exhaustion increases the risk of secondary infections, but it does not discuss the spleen. Searches for splenic lymphoid depletion, autopsy findings, and CT-measured splenic volume found no passage supporting either specific claim; page numbers were unavailable in our copy. (LLM, conf=0.75)
Experimental — accuracy not yet measured
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Cites
The Gut Microbiota Plays a Protective Role in the Host Defence Against Pneumococcal Pneumonia
Schuijt, T. J., Lankelma, J. M., Scicluna, B. P., de Sousa e Melo, F., Roelofs, J. J. T. H., de Boer, J. D., Hoogendijk, A. J., de Beer, R., de Vos, A., Belzer, C., et al. (2016) · Gut · doi:10.1136/gutjnl-2015-309728 · Cited by 832 · see citing works
Dickson, R. P., Erb-Downward, J. R., & Huffnagle, G. B. (2014) · The Lancet Respiratory Medicine · doi:10.1016/s2213-2600(14)70028-1 · Cited by 371 · see citing works
Sartelli, M., Di Bella, S., McFarland, L. V., Khanna, S., Furuya-Kanamori, L., Abuzeid, N., Abu-Zidan, F. M., Ansaloni, L., Augustin, G., Bala, M., et al. (2019) · World Journal of Emergency Surgery · doi:10.1186/s13017-019-0228-3 · Cited by 159 · see citing works
Self-citationGut–kidney crosstalk in septic acute kidney injury
Zhang, J., Ankawi, G., Sun, J., Digvijay, K., Yin, Y., Rosner, M. H., & Ronco, C. (2018) · Critical Care · doi:10.1186/s13054-018-2040-y · Cited by 95 · see citing works
McQuade, J. L., Ologun, G. O., Arora, R., & Wargo, J. A. (2020) · Current Oncology Reports · doi:10.1007/s11912-020-00913-y · Cited by 63 · see citing works
Postbiotics as potential new therapeutic agents for sepsis
Lou, X., Xue, J., Shao, R., Mo, C., Wang, F., & Chen, G. (2023) · Burns & Trauma · doi:10.1093/burnst/tkad022 · Cited by 38 · see citing works
Flagged first, then by citations
Research works printed but not linked: 51
- [1]Singer M Deutschman CS Seymour CW Shankar-Hari M Annane D Bauer M Bellomo R Bernard GR Chiche JD Coopersmith CM Hotchkiss RS Levy MM Marshall JC Martin GS Opal SM Rubenfeld GD van der Poll T Vincent JL Angus DC The Third International Consensus Definitions for Sepsis and Septic Shock (Sepsis-3) JAMA 2016 315 801 810 26903338 PMC4968574
- [3]Chousterman BG Swirski FK Weber GF Cytokine storm and sepsis disease pathogenesis Semin Immunopathol 2017 39 517 528 28555385
- [4]Townsend SR Schorr C Levy MM Dellinger RP Reducing mortality in severe sepsis: the Surviving Sepsis Campaign Clin Chest Med 2008 29 721 733, x 18954706
- [5]Levy MM Dellinger RP Townsend SR Linde-Zwirble WT Marshall JC Bion J Schorr C Artigas A Ramsay G Beale R Parker MM Gerlach H Reinhart K Silva E Harvey M Regan S Angus DC The Surviving Sepsis Campaign: results of an international guideline-based performance improvement program targeting severe sepsis Intensive Care Med 2010 36 222 231 20069275 PMC2826633
- [6]Chakraborty RK Burns B Systemic Inflammatory Response Syndrome. 2023 May 29. In: StatPearls [Internet]. Treasure Island (FL): StatPearls Publishing; 2025 31613449
- [7]Howell MD Donnino M Clardy P Talmor D Shapiro NI Occult hypoperfusion and mortality in patients with suspected infection Intensive Care Med 2007 33 1892 1899 17618418
- [8]Kullberg RFJ Wiersinga WJ Haak BW Gut microbiota and sepsis: from pathogenesis to novel treatments Curr Opin Gastroenterol 2021 37 578 585 34419965
- [9]Leow YJ Wang JDJ Vipin A Sandhu GK Soo SA Kumar D Mohammed AA Zailan FZB Lee FPHE Ghildiyal S Liew SY Dang C Tanoto P Tan IYZ Chong WFW Kandiah N Biomarkers and Cognition Study, Singapore (BIOCIS): Protocol, Study Design, and Preliminary Findings J Prev Alzheimers Dis 2024 11 1093 1105 39044522 PMC11266377
- [10]Belkaid Y Hand TW Role of the microbiota in immunity and inflammation Cell 2014 157 121 141 24679531 PMC4056765
- [11]Marascio N Scarlata GGM Romeo F Cicino C Trecarichi EM Quirino A Torti C Matera G Russo A The Role of Gut Microbiota in the Clinical Outcome of Septic Patients: State of the Art and Future Perspectives Int J Mol Sci 2023 24 PMC10252956 37298258
- [12]D'Elia RV Harrison K Oyston PC Lukaszewski RA Clark GC Targeting the "cytokine storm" for therapeutic benefit Clin Vaccine Immunol 2013 20 319 327 23283640 PMC3592351
- [13]Takeuchi O Akira S Pattern recognition receptors and inflammation Cell 2010 140 805 820 20303872
- [14]Raymond SL Holden DC Mira JC Stortz JA Loftus TJ Mohr AM Moldawer LL Moore FA Larson SD Efron PA Microbial recognition and danger signals in sepsis and trauma Biochim Biophys Acta Mol Basis Dis 2017 1863 2564 2573 28115287 PMC5519458
- [15]Boomer JS To K Chang KC Takasu O Osborne DF Walton AH Bricker TL Jarman SD 2nd Kreisel D Krupnick AS Srivastava A Swanson PE Green JM Hotchkiss RS Immunosuppression in patients who die of sepsis and multiple organ failure JAMA 2011 306 2594 2605 22187279 PMC3361243
- [16]Hotchkiss RS Monneret G Payen D Sepsis-induced immunosuppression: from cellular dysfunctions to immunotherapy Nat Rev Immunol 2013 13 862 874 24232462 PMC4077177
- [17]Neal MD Sodhi CP Jia H Dyer M Egan CE Yazji I Good M Afrazi A Marino R Slagle D Ma C Branca MF Prindle T Jr Grant Z Ozolek J Hackam DJ Toll-like receptor 4 is expressed on intestinal stem cells and regulates their proliferation and apoptosis via the p53 up-regulated modulator of apoptosis J Biol Chem 2012 287 37296 37308 22955282 PMC3481327
- [18]Dominguez JA Vithayathil PJ Khailova L Lawrance CP Samocha AJ Jung E Leathersich AM Dunne WM Coopersmith CM Epidermal growth factor improves survival and prevents intestinal injury in a murine model of pseudomonas aeruginosa pneumonia Shock 2011 36 381 389 21701422 PMC3175258
- [19]McDonald D Ackermann G Khailova L Baird C Heyland D Kozar R Lemieux M Derenski K King J Vis-Kampen C Knight R Wischmeyer PE Extreme Dysbiosis of the Microbiome in Critical Illness mSphere 2016 1 PMC5007431 27602409
- [20]Lankelma JM van Vught LA Belzer C Schultz MJ van der Poll T de Vos WM Wiersinga WJ Critically ill patients demonstrate large interpersonal variation in intestinal microbiota dysregulation: a pilot study Intensive Care Med 2017 43 59 68 27837233 PMC5203863
- [22]Zhang Q Lu C Fan W Zhang J Yin Y Application background and mechanism of short-chain fatty acids in sepsis-associated encephalopathy Front Cell Infect Microbiol 2023 13 1137161 37056708 PMC10086159
- [23]Karmarkar D Rock KL Microbiota signalling through MyD88 is necessary for a systemic neutrophilic inflammatory response Immunology 2013 140 483 492 23909393 PMC3839652
- [24]Leonhardt J Dorresteijn MJ Neugebauer S Mihaylov D Kunze J Rubio I Hohberger FS Leonhardt S Kiehntopf M Stahl K Bode C David S Wagener FADTG Pickkers P Bauer M Immunosuppressive effects of circulating bile acids in human endotoxemia and septic shock: patients with liver failure are at risk Crit Care 2023 27 372 37759239 PMC10523742
- [26]Jia Dong James W Fahim Shaik AA Yong’an Matthew T Yin LY Kon Voi T A Systematic Review and Meta-Analysis on the Impact of Preserving the Hepatic Branch of the Vagus Nerve in Upper Gastrointestinal Surgeries Foregut: The Journal of the American Foregut Society 2024 4 428 441
- [27]Chaudhry N Duggal AK Sepsis Associated Encephalopathy Adv Med 2014 2014 762320 26556425 PMC4590973
- [28]Mak MHW Low JK Junnarkar SP Huey TCW Shelat VG A prospective validation of Sepsis-3 guidelines in acute hepatobiliary sepsis: qSOFA lacks sensitivity and SIRS criteria lacks specificity (Cohort Study) Int J Surg 2019 72 71 77 31678690
- [29]Mittal R Coopersmith CM Redefining the gut as the motor of critical illness Trends Mol Med 2014 20 214 223 24055446 PMC3959633
- [30]Muldoon LL Alvarez JI Begley DJ Boado RJ Del Zoppo GJ Doolittle ND Engelhardt B Hallenbeck JM Lonser RR Ohlfest JR Prat A Scarpa M Smeyne RJ Drewes LR Neuwelt EA Immunologic privilege in the central nervous system and the blood-brain barrier J Cereb Blood Flow Metab 2013 33 13 21 23072749 PMC3597357
- [32]Zhao Q Shen Y Li R Wu J Lyu J Jiang M Lu L Zhu M Wang W Wang Z Liu Q Hoffmann U Karhausen J Sheng H Zhang W Yang W Cardiac arrest and resuscitation activates the hypothalamic-pituitary-adrenal axis and results in severe immunosuppression J Cereb Blood Flow Metab 2021 41 1091 1102 32787543 PMC8054717
- [33]Xiao K Sun Y Song J Li L Mao W Jiang C Gut microbiota involved in myocardial dysfunction induced by sepsis Microb Pathog 2023 175 105984 36638851
- [34]Chou RH Wu PS Wang SC Wu CH Lu SF Lien RY Tsai YL Lu YW Kuo MR Guo JY Chou RY Huang PH Lin SJ Paradox of trimethylamine-N-oxide, the impact of malnutrition on microbiota-derived metabolites and septic patients J Intensive Care 2021 9 65 34674768 PMC8529374
- [35]Pooran N Indaram A Singh P Bank S Cytokines (IL-6, IL-8, TNF): early and reliable predictors of severe acute pancreatitis J Clin Gastroenterol 2003 37 263 266 12960727
- [36]Liau MYQ Liau JYJ Selvakumar SV Chan KS Shelat VG Heart rate variability in acute pancreatitis: a narrative review Transl Gastroenterol Hepatol 2024 9 68 39503030 PMC11535813
- [37]Lim JSH Shelat VG Liver resection, and technical advances to mitigate post-hepatectomy liver failure Hepatobiliary Surg Nutr 2024 13 366 369 38617495 PMC11007352
- [38]Toh EQ Wong HPN Wang JDJ Liau MYQ Tan YF Shelat VG Prehabilitation programs in liver resection: a narrative review Chin Clin Oncol 2024 13 9 38372059
- [39]Jenne CN Kubes P Immune surveillance by the liver Nat Immunol 2013 14 996 1006 24048121
- [40]Yan J Li S Li S The role of the liver in sepsis Int Rev Immunol 2014 33 498 510 24611785 PMC4160418
- [41]Tripathi A Debelius J Brenner DA Karin M Loomba R Schnabl B Knight R The gut-liver axis and the intersection with the microbiome Nat Rev Gastroenterol Hepatol 2018 15 397 411 29748586 PMC6319369
- [42]Wasmuth HE Kunz D Yagmur E Timmer-Stranghöner A Vidacek D Siewert E Bach J Geier A Purucker EA Gressner AM Matern S Lammert F Patients with acute on chronic liver failure display "sepsis-like" immune paralysis J Hepatol 2005 42 195 201 15664244
- [43]Shelat VG Wang Q Chia CL Wang Z Low JK Woon WW Patients with culture negative pyogenic liver abscess have the same outcomes compared to those with Klebsiella pneumoniae pyogenic liver abscess Hepatobiliary Pancreat Dis Int 2016 15 504 511 27733320
- [44]Fan EKY Fan J Regulation of alveolar macrophage death in acute lung inflammation Respir Res 2018 19 50 29587748 PMC5872399
- [45]Lelubre C Vincent JL Mechanisms and treatment of organ failure in sepsis Nat Rev Nephrol 2018 14 417 427 29691495
- [46]Luyt CE Bouadma L Morris AC Dhanani JA Kollef M Lipman J Martin-Loeches I Nseir S Ranzani OT Roquilly A Schmidt M Torres A Timsit JF Pulmonary infections complicating ARDS Intensive Care Med 2020 46 2168 2183 33175277 PMC7656898
- [47]Li X Jamal M Guo P Jin Z Zheng F Song X Zhan J Wu H Irisin alleviates pulmonary epithelial barrier dysfunction in sepsis-induced acute lung injury via activation of AMPK/SIRT1 pathways Biomed Pharmacother 2019 118 109363 31545277
- [48]Dickson RP Erb-Downward JR Huffnagle GB Homeostasis and its disruption in the lung microbiome Am J Physiol Lung Cell Mol Physiol 2015 309 L1047 L1055 26432870 PMC4652146
- [51]Piccioni A Spagnuolo F Candelli M Voza A Covino M Gasbarrini A Franceschi F The Gut Microbiome in Sepsis: From Dysbiosis to Personalized Therapy J Clin Med 2024 13 PMC11508704 39458032
- [52]Xu Y Kong X Zhu Y Xu J Mao H Li J Zhang J Zhu X Contribution of gut microbiota toward renal function in sepsis Front Microbiol 2022 13 985283 36147845 PMC9486003
- [53]Abhari Kh Shekarforoush SS Sajedianfard J Hosseinzadeh S Nazifi S The effects of probiotic, prebiotic and synbiotic diets containing Bacillus coagulans and inulin on rat intestinal microbiota Iran J Vet Res 2015 16 267 273 27175187 PMC4782696
- [54]Huang F Li S Chen W Han Y Yao Y Yang L Li Q Xiao Q Wei J Liu Z Chen T Deng X Postoperative Probiotics Administration Attenuates Gastrointestinal Complications and Gut Microbiota Dysbiosis Caused by Chemotherapy in Colorectal Cancer Patients Nutrients 2023 15 PMC9861237 36678227
- [55]Wang L Li L Lv Y Chen Q Feng J Zhao X Lactobacillus plantarum Restores Intestinal Permeability Disrupted by Salmonella Infection in Newly-hatched Chicks Sci Rep 2018 8 2229 29396554 PMC5797085
- [56]Tang H Huang W Yao YF The metabolites of lactic acid bacteria: classification, biosynthesis and modulation of gut microbiota Microb Cell 2023 10 49 62 36908281 PMC9993431
- [61]Lei J Sun L Huang S Zhu C Li P He J Mackey V Coy DH He Q The antimicrobial peptides and their potential clinical applications Am J Transl Res 2019 11 3919 3931 31396309 PMC6684887
Cited by
Sorted by citations
Progress on the correlation between sepsis and gut microbiota: a narrative review
Yuan, Y., Li, J., & Yang, C. (2026) · Frontiers in microbiology · doi:10.3389/fmicb.2026.1862891 · Cited by 1 · see citing works
- Authors
- Wang, J. D. J., Suan, E., Li, S. S., & Shelat, V. G.
- Affiliations
- Nanyang Technological University (SG)
- Tan Tock Seng Hospital (SG)
- ORCID
- Shelat, Vishal G
- Venue
- World Journal of Critical Care Medicine
- Publisher
- Baishideng Publishing Group Inc.
- Published
- 2025-12-09
- Volume
- 14
- Issue
- 4
- Pages
- 105547-105547
- ISSN
- 2220-3141 (ISSN-L)
- PMC
- PMC12687073
- OpenAlex
- W4416757797
- Cited by
- 12
- References
- 6
- Citations by year
- 2026: 12
- FWCI
- 1.84
- Type
- journal article
- Language
- en
- Open access
- diamond
- doi.org
- Licence
- cc-by-nc
- Locations
- World Journal of Critical Care Medicine (publishedVersion, cc-by-nc)
- PubMed (publishedVersion)
- PubMed Central (publishedVersion, cc-by-nc)
- Funders
- Eli Lilly and Company
- Edwards Lifesciences
- Eisai
- European Society of Intensive Care Medicine
- Topics
- Health Sciences › Medicine › Epidemiology › Sepsis Diagnosis and Treatment
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Nursing › Nutrition and Dietetics › Clinical Nutrition and Gastroenterology
- Keywords
- sepsis, gut microbiota, gut dysbiosis, microbial translocation, endotoxin, short-chain fatty acids, uremic toxins, bile acids, trimethylamine N-oxide, systemic inflammation, multiple organ failure, liver dysfunction, pulmonary dysfunction, renal dysfunction, brain dysfunction, cardiac dysfunction, prebiotics, probiotics, synbiotics, fecal microbiota transplantation, microbiota-based therapy
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