C-mannosylation supports folding and enhances stability of thrombospondin repeats
Open accessAbstract
Previous studies demonstrated importance of C-mannosylation for efficient protein secretion. To study its impact on protein folding and stability, we analyzed both C-mannosylated and non-C-mannosylated thrombospondin type 1 repeats (TSRs) of netrin receptor UNC-5. In absence of C-mannosylation, UNC-5 TSRs could only be obtained at low temperature and a significant proportion displayed incorrect intermolecular disulfide bridging, which was hardly observed when C-mannosylated. Glycosylated TSRs exhibited higher resistance to thermal and reductive denaturation processes, and the presence of C-mannoses promoted the oxidative folding of a reduced and denatured TSR in vitro. Molecular dynamics simulations supported the experimental studies and showed that C-mannoses can be involved in intramolecular hydrogen bonding and limit the flexibility of the TSR tryptophan-arginine ladder. We propose that in the endoplasmic reticulum folding process, C-mannoses orient the underlying tryptophan residues and facilitate the formation of the tryptophan-arginine ladder, thereby influencing the positioning of cysteines and disulfide bridging.
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Cites
Comparison of simple potential functions for simulating liquid water
Jorgensen, W. L., Chandrasekhar, J., Madura, J., Impey, R., & Klein, M. (1983) · The Journal of Chemical Physics · doi:10.1063/1.445869 · Cited by 38,335 · see citing works
Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems
Darden, T., York, D., & Pedersen, L. (1993) · The Journal of Chemical Physics · doi:10.1063/1.464397 · Cited by 29,588 · see citing works
Scalable molecular dynamics with NAMD
Phillips, J. C., Braun, R., Wang, W., Gumbart, J., Tajkhorshid, E., Villa, E., Chipot, C., Skeel, R. D., Kalé, L., & Schulten, K. (2005) · Journal of Computational Chemistry · doi:10.1002/jcc.20289 · Cited by 16,914 · see citing works
All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins
MacKerell, A. D., Bashford, D., Bellott, M., Dunbrack, R. L., Evanseck, J. D., Field, M. J., Fischer, S., Gao, J., Guo, H., Ha, S., et al. (1998) · The Journal of Physical Chemistry B · doi:10.1021/jp973084f · Cited by 14,270 · see citing works
Comparative Protein Modelling by Satisfaction of Spatial Restraints
Šali, A., & Blundell, T. L. (1993) · Journal of Molecular Biology · doi:10.1006/jmbi.1993.1626 · Cited by 12,977 · see citing works
Varki, A. (2017) · Glycobiology · doi:10.1093/glycob/cww086 · Cited by 2,635 · cited 1× · see citing works
“It can influence the folding of a protein as well as its physical properties, activity and ability to interact with other macromolecules, thus playing an important role in a great variety of cellular processes (Varki, 2017).”
BackgroundCation-π interactions in structural biology
Gallivan, J. P., & Dougherty, D. A. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.17.9459 · Cited by 2,005 · see citing works
Hedgecock, E. M., Culotti, J. G., & Hall, D. H. (1990) · Neuron · doi:10.1016/0896-6273(90)90444-k · Cited by 935 · see citing works
Kelley, L. A., Gardner, S. P., & Sutcliffe, M. J. (1996) · Protein Engineering Design and Selection · doi:10.1093/protein/9.11.1063 · Cited by 506 · see citing works
Hofsteenge, J., Mueller, D. R., de Beer, T., Loeffler, A., Richter, W. J., & Vliegenthart, J. F. G. (1994) · Biochemistry · doi:10.1021/bi00250a003 · Cited by 298 · see citing works
C-Mannosylation and O-Fucosylation of the Thrombospondin Type 1 Module
Hofsteenge, J., Huwiler, K. G., Maček, B., Heß, D., Lawler, J., Mosher, D. F., & Peter‐Katalinić, J. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.m008073200 · Cited by 260 · see citing works
Crystal structure of the TSP-1 type 1 repeats
Tan, K., Duquette, M. A., Liu, J., Dong, Y., Zhang, R., Joachimiak, A., Lawler, J., & Wang, J. (2002) · The Journal of Cell Biology · doi:10.1083/jcb.200206062 · Cited by 258 · see citing works
Macrocycle Conformational Sampling with MacroModel
Watts, K. S., Dalal, P., Tebben, A. J., et al. (2014) · Journal of Chemical Information and Modeling · doi:10.1021/ci5001696 · Cited by 190 · see citing works
NetCGlyc 1.0: Prediction of mammalian C-mannosylation sites
Julenius, K. (2007) · Glycobiology · doi:10.1093/glycob/cwm050 · Cited by 174 · see citing works
ProteinC-Mannosylation Is Enzyme-catalysed and Uses Dolichyl-Phosphate-Mannose as a Precursor
Doucey, M., Heß, D., Cacan, R., & Hofsteenge, J. (1998) · Molecular Biology of the Cell · doi:10.1091/mbc.9.2.291 · Cited by 168 · see citing works
Recognition Signal for C-Mannosylation of Trp-7 in RNase 2 Consists of Sequence Trp-x-x-Trp
Krieg, J., Hartmann, S., Vicentini, A. M., Gläsner, W., Heß, D., & Hofsteenge, J. (1998) · Molecular Biology of the Cell · doi:10.1091/mbc.9.2.301 · Cited by 146 · see citing works
Structural basis of myelin-associated glycoprotein adhesion and signalling
Pronker, M. F., Lemstra, S., Snijder, J., Heck, A. J. R., Thies‐Weesie, D. M. E., Pasterkamp, R. J., & Janssen, B. J. C. (2016) · Nature Communications · doi:10.1038/ncomms13584 · Cited by 144 · see citing works
Smith, C. A., Pangburn, M. K., Vogel, C., & Müller‐Eberhard, H. J. (1984) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(17)43086-9 · Cited by 129 · see citing works
C. elegans DPY-19 Is a C-Mannosyltransferase Glycosylating Thrombospondin Repeats
Buettner, F. F. R., Ashikov, A., Tiemann, B., et al. (2013) · Molecular Cell · doi:10.1016/j.molcel.2013.03.003 · Cited by 122 · see citing works
Self-citationSaturation Mutagenesis of the WSXWS Motif of the Erythropoietin Receptor
Hilton, D. J., Watowich, S. S., Katz, L., & Lodish, H. F. (1996) · Journal of Biological Chemistry · doi:10.1074/jbc.271.9.4699 · Cited by 116 · see citing works
de Beer, T., Vliegenthart, J. F. G., Loeffler, A., & Hofsteenge, J. (1995) · Biochemistry · doi:10.1021/bi00037a016 · Cited by 115 · see citing works
Hofsteenge, J., Blommers, M. J. J., Heß, D., Furmanek, A., & Miroshnichenko, O. (1999) · Journal of Biological Chemistry · doi:10.1074/jbc.274.46.32786 · Cited by 110 · see citing works
C-Mannosylation of MUC5AC and MUC5B Cys subdomains
Pérez-Vilar, J. (2004) · Glycobiology · doi:10.1093/glycob/cwh041 · Cited by 110 · see citing works
Aleshin, A. E., Schraufstätter, I. U., Stec, B., Bankston, L. A., Liddington, R., & DiScipio, R. G. (2012) · Journal of Biological Chemistry · doi:10.1074/jbc.m111.327809 · Cited by 105 · see citing works
Wang, L. W., Leonhard-Melief, C., Haltiwanger, R. S., & Apte, S. (2009) · Journal of Biological Chemistry · doi:10.1074/jbc.m109.038059 · Cited by 100 · see citing works
Honigberg, L. A., & Kenyon, C. J. (2000) · Development · doi:10.1242/dev.127.21.4655 · Cited by 95 · see citing works
Hamming, O. J., Kang, L., Svensson, A. E., et al. (2012) · Journal of Biological Chemistry · doi:10.1074/jbc.m111.311084 · Cited by 92 · see citing works
Shcherbakova, A., Tiemann, B., Buettner, F. F. R., & Bakker, H. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1613165114 · Cited by 83 · see citing works
Self-citationStereocontrolled syntheses of α-C-mannosyltryptophan and its analogues
Nishikawa, T., Koide, Y., Kajii, S., et al. (2005) · Organic & Biomolecular Chemistry · doi:10.1039/b414905j · Cited by 75 · see citing works
Krieg, J., Gläsner, W., Vicentini, A. M., Doucey, M., Löffler, A., Heß, D., & Hofsteenge, J. (1997) · Journal of Biological Chemistry · doi:10.1074/jbc.272.42.26687 · Cited by 69 · see citing works
The layered fold of the TSR domain of P. falciparum TRAP contains a heparin binding site
Tossavainen, H., Pihlajamaa, T., Huttunen, T. K., Raulo, E., Rauvala, H., Permi, P., & Kilpeläinen, I. (2006) · Protein Science · doi:10.1110/ps.052068506 · Cited by 62 · see citing works
Pedersen, D. V., Gadeberg, T. A. F., Thomas, C., Wang, Y., Joram, N., Jensen, R. K., Mazarakis, S. M., Revel, M., Sissy, C. E., Petersen, S. V., et al. (2019) · Frontiers in Immunology · doi:10.3389/fimmu.2019.02007 · Cited by 62 · see citing works
Sasazawa, Y., Sato, N., Suzuki, T., Dohmae, N., & Simizu, S. (2015) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2015.10.116 · Cited by 56 · see citing works
Identification of DPY19L3 as theC-mannosyltransferase of R-spondin1 in human cells
Niwa, Y., Suzuki, T., Dohmae, N., & Simizu, S. (2016) · Molecular Biology of the Cell · doi:10.1091/mbc.e15-06-0373 · Cited by 56 · see citing works
van den Bos, R. M., Pearce, N. M., Granneman, J. C. M., Brondijk, T. H. C., & Gros, P. (2019) · Frontiers in Immunology · doi:10.3389/fimmu.2019.02097 · Cited by 44 · see citing works
Fujiwara, M., Kato, S., Niwa, Y., Suzuki, T., Tsuchiya, M., Sasazawa, Y., Dohmae, N., & Simizu, S. (2016) · FEBS Letters · doi:10.1002/1873-3468.12274 · Cited by 41 · see citing works
Regulation of secretion and enzymatic activity of lipoprotein lipase by C -mannosylation
Okamoto, S., Murano, T., Suzuki, T., Uematsu, S., Niwa, Y., Sasazawa, Y., Dohmae, N., Bujo, H., & Simizu, S. (2017) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2017.03.085 · Cited by 39 · see citing works
Folding of a single domain protein entering the endoplasmic reticulum precedes disulfide formation
Robinson, P. J. J., Pringle, M. A., Woolhead, C. A., et al. (2017) · Journal of Biological Chemistry · doi:10.1074/jbc.m117.780742 · Cited by 33 · see citing works
Identification of glycans on plasma-derived ADAMTS13
Verbij, F. C., Stokhuijzen, E., Kaijen, P. H. P., van Alphen, F. P. J., Meijer, A. B., & Voorberg, J. (2016) · Blood · doi:10.1182/blood-2016-06-720912 · Cited by 31 · see citing works
Taylor, K. M., TRIMBY, A. R., & Campbell, A. K. (1997) · Immunology · doi:10.1046/j.1365-2567.1997.00225.x · Cited by 23 · see citing works
Klenotic, P. A., Page, R. C., Misra, S., et al. (2011) · Protein Expression and Purification · doi:10.1016/j.pep.2011.07.010 · Cited by 22 · see citing works
Huwiler, K. G., Vestling, M. M., Annis, D. S., et al. (2002) · Biochemistry · doi:10.1021/bi026463u · Cited by 21 · see citing works
Non-C-mannosylable mucin CYS domains hindered proper folding and secretion of mucin
Gouyer, V., Demouveaux, B., Lacroix, G., et al. (2018) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2018.10.138 · Cited by 15 · see citing works
Structural characterization of the second TSP1-module of human thrombospondin
Roszmusz, E., Patthy, A., Trexler, M., et al. (2002) · Biochemical and Biophysical Research Communications · doi:10.1016/s0006-291x(02)00826-4 · Cited by 3 · see citing works
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Zhong, Q., Xiao, X., Qiu, Y., Xu, Z., Chen, C., Chong, B., Zhao, X., Hai, S., Li, S., An, Z., et al. (2023) · MedComm · doi:10.1002/mco2.261 · Cited by 442 · see citing works
De Masi, R., & Orlando, S. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23137373 · Cited by 20 · see citing works
- Authors
- Shcherbakova, A., Preller, M., Taft, M. H., Pujols, J., Ventura, S., Tiemann, B., Buettner, F. F., & Bakker, H.
- Affiliations
- Medizinische Hochschule Hannover (DE)
- Universitat Autònoma de Barcelona (ES)
- Corresponding author
- Bakker, Hans
- ORCID
- Venue
- eLife
- Publisher
- eLife Sciences Publications, Ltd
- Published
- 2019-12-23
- Volume
- 8
- ISSN
- 2050-084X (ISSN-L)
- PMC
- PMC6954052
- OpenAlex
- W2995628811
- Cited by
- 85
- References
- 44
- Citations by year
- 2026: 7 · 2025: 8 · 2024: 7 · 2023: 12 · 2022: 16 · 2021: 19 · 2020: 13 · 2019: 1 · 2018: 1
- FWCI
- 4.05
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- eLife (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Dipòsit Digital de Documents de la UAB (Universitat Autònoma de Barcelona) (submittedVersion, cc-by)
- LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Científicas) (submittedVersion, cc-by)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- OPUS (Augsburg University) (submittedVersion, cc-by)
- Apollo (University of Cambridge) (submittedVersion, cc-by)
- Apollo (cc-by)
- Funders
- Deutsche Forschungsgemeinschaft (FOR2509 BA 4091/6-1, BA 4091/5-1, BU 2920/2-1)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Glycosylation and Glycoproteins Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Endoplasmic Reticulum Stress and Disease
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
- Keywords
- C-mannosylation, thrombospondin type 1 repeats, protein folding, protein stability, oxidative protein folding, glycosylation, thermal denaturation, intramolecular hydrogen bonding
- MeSH terms
- Animals, Arginine, Cysteine, Disulfides, Drosophila melanogaster, Endoplasmic Reticulum, Glycosylation, Hydrogen Bonding, Mannose, Membrane Proteins, Protein Conformation, Receptors, Cell Surface, Tryptophan, Caenorhabditis elegans, Protein Folding, Thrombospondins, Caenorhabditis elegans Proteins, Molecular Dynamics Simulation
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