Evolutionary rescue of phosphomannomutase deficiency in yeast models of human disease
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Abstract
The most common cause of human congenital disorders of glycosylation (CDG) are mutations in the phosphomannomutase gene PMM2, which affect protein N -linked glycosylation. The yeast gene SEC53 encodes a homolog of human PMM2 . We evolved 384 populations of yeast harboring one of two human-disease-associated alleles, sec53- V238M and sec53 -F126L, or wild-type SEC53 . We find that after 1000 generations, most populations compensate for the slow-growth phenotype associated with the sec53 human-disease-associated alleles. Through whole-genome sequencing we identify compensatory mutations, including known SEC53 genetic interactors. We observe an enrichment of compensatory mutations in other genes whose human homologs are associated with Type 1 CDG, including PGM1 , which encodes the minor isoform of phosphoglucomutase in yeast. By genetic reconstruction, we show that evolved pgm1 mutations are dominant and allele-specific genetic interactors that restore both protein glycosylation and growth of yeast harboring the sec53 -V238M allele. Finally, we characterize the enzymatic activity of purified Pgm1 mutant proteins. We find that reduction, but not elimination, of Pgm1 activity best compensates for the deleterious phenotypes associated with the sec53 -V238M allele. Broadly, our results demonstrate the power of experimental evolution as a tool for identifying genes and pathways that compensate for human-disease-associated alleles.
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Thorpe, H. J., Partha, R., Little, J., Clark, N. L., & Chow, C. Y. (2024) · PLoS Genetics · doi:10.1371/journal.pgen.1011406 · Cited by 4 · see citing works
Beneficial effects of Glc-1,6-P2 modulation on mutant phosphomannomutase-2
Monticelli, M., Paris, D., Monti, M. C., Morretta, E., Pakanová, Z., Nemčovič, M., Kodríková, R., Cubellis, M. V., & Andreotti, G. (2025) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2025.119948 · Cited by 3 · see citing works
Self-citationMonticelli, M., Mele, B. H., Wright, D. M., Guerriero, S., Andreotti, G., & Cubellis, M. V. (2024) · Biochimie · doi:10.1016/j.biochi.2024.02.011 · Cited by 2 · see citing works
Self-citationAdditional file 3 of Congenital disorders of glycosylation: narration of a story through its patents
Monticelli, M., D’Onofrio, T., Jaeken, J., Morava, É., Andreotti, G., & Cubellis, M. V. (2023) · Figshare · doi:10.6084/m9.figshare.24054321
Self-citationAdditional file 5 of Congenital disorders of glycosylation: narration of a story through its patents
Monticelli, M., D’Onofrio, T., Jaeken, J., Morava, É., Andreotti, G., & Cubellis, M. V. (2023) · Figshare · doi:10.6084/m9.figshare.24054330
Self-citationAdditional file 2 of Congenital disorders of glycosylation: narration of a story through its patents
Monticelli, M., D’Onofrio, T., Jaeken, J., Morava, É., Andreotti, G., & Cubellis, M. V. (2023) · Figshare · doi:10.6084/m9.figshare.24054318
Self-citationAdditional file 1 of Congenital disorders of glycosylation: narration of a story through its patents
Monticelli, M., D’Onofrio, T., Jaeken, J., Morava, É., Andreotti, G., & Cubellis, M. V. (2023) · Figshare · doi:10.6084/m9.figshare.24054312
Self-citationAdditional file 4 of Congenital disorders of glycosylation: narration of a story through its patents
Monticelli, M., D’Onofrio, T., Jaeken, J., Morava, É., Andreotti, G., & Cubellis, M. V. (2023) · Figshare · doi:10.6084/m9.figshare.24054324
Self-citationThorpe, H. J., Pedersen, B. S., Dietze, M., Link, N., Quinlan, A. R., Bonkowsky, J. L., Thomas, A. E., & Chow, C. Y. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.08.12.607501
DHRSX : revisiting dolichol synthesis
Althoff, C. R. (2024) · doi:10.70675/a426cfcezaa0fz4329za637z5471552e4468
- Authors
- Vignogna, R. C., Allocca, M., Monticelli, M., Norris, J. W., Steet, R., Perlstein, E. O., Andreotti, G., & Lang, G. I.
- Affiliations
- Lehigh University (US)
- National Academies of Sciences, Engineering, and Medicine (US)
- Greenwood Genetic Center (US)
- Istituto di Chimica Biomolecolare (IT)
- Corresponding author
- Lang, Gregory I
- ORCID
- Venue
- eLife
- Publisher
- eLife Sciences Publications, Ltd
- Published
- 2022-10-10
- Volume
- 11
- ISSN
- 2050-084X (ISSN-L)
- PMC
- PMC9578706
- OpenAlex
- W4303986851
- Cited by
- 15
- References
- 87
- Citations by year
- 2025: 3 · 2024: 7 · 2023: 3 · 2022: 2
- FWCI
- 3.02
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- eLife (publishedVersion, cc-by)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- CNR ExploRA (submittedVersion)
- Funders
- National Institutes of Health (R01GM127420, P20GM139769)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Evolution and Genetic Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Fungal and yeast genetics research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Glycosylation and Glycoproteins Research
- Keywords
- phosphomannomutase deficiency, PMM2, congenital disorders of glycosylation, N-glycosylation, experimental evolution, compensatory mutations, PGM1, phosphoglucomutase
- MeSH terms
- Humans, Phosphoglucomutase, Saccharomyces cerevisiae, Phosphotransferases (Phosphomutases), Congenital Disorders of Glycosylation, Saccharomyces cerevisiae Proteins, Mutant Proteins
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