Ishihama, Yasushi

Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips

Rappsilber, J., Mann, M., & Ishihama, Y. (2007) · Nature Protocols

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 4,641

Exponentially Modified Protein Abundance Index (emPAI) for Estimation of Absolute Protein Amount in Proteomics by the Number of Sequenced Peptides per Protein

Ishihama, Y., Oda, Y., Tabata, T., Sato, T., Nagasu, T., Rappsilber, J., & Mann, M. (2005) · Molecular & Cellular Proteomics

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 2,055

PINK1-mediated phosphorylation of the Parkin ubiquitin-like domain primes mitochondrial translocation of Parkin and regulates mitophagy

Shiba-Fukushima, K., Imai, Y., Yoshida, S., Ishihama, Y., Kanao, T., Sato, S., & Hattori, N. (2012) · Scientific Reports

Parkinson's Disease Mechanisms and TreatmentsAutophagy in Disease and Therapy

Cited by 577

Atg38 is required for autophagy-specific phosphatidylinositol 3-kinase complex integrity

Araki, Y., Ku, W.-C., Akioka, M., May, A. I., Hayashi, Y., Arisaka, F., Ishihama, Y., & Ohsumi, Y. (2013) · Journal of Cell Biology

Autophagy in Disease and TherapyCellular transport and secretion

Cited by 119

In vitro reconstitution of epigenetic reprogramming in the human germ line

Murase, Y., Yokogawa, R., Yabuta, Y., Nagano, M., Katou, Y., Mizuyama, M., Kitamura, A., Puangsricharoen, P., Yamashiro, C., Hu, B., et al. (2024) · Nature

Pluripotent Stem Cells ResearchEpigenetics and DNA Methylation

Cited by 80

Exploring the landscape of ectodomain shedding by quantitative protein terminomics

Tsumagari, K., Chang, C.-H., & Ishihama, Y. (2021) · iScience

Protease and Inhibitor MechanismsAdvanced Proteomics Techniques and Applications

Cited by 24

Exploring the Landscape of Ectodomain Shedding by Quantitative Protein Terminomics

Tsumagari, K., Chang, C.-H., & Ishihama, Y. (2020) · iScience

Protease and Inhibitor MechanismsAdvanced Proteomics Techniques and Applications

Cited by 24

Maintenance of neural stem-progenitor cells by the lysosomal biosynthesis regulators TFEB and TFE3 in the embryonic mouse telencephalon

Yuizumi, N., Harada, Y., Kuniya, T., Sunabori, T., Koike, M., Wakabayashi, M., Ishihama, Y., Suzuki, Y., Kawaguchi, D., & Gotoh, Y. (2021) · Stem Cells

Neurogenesis and neuroplasticity mechanismsAutophagy in Disease and Therapy

Cited by 23

pSNAP: Proteome-wide analysis of elongating nascent polypeptide chains

Uchiyama, J., Roy, R., Wang, D. O., Morikawa, K., Kawahara, Y., Iwasaki, M., Yoshino, C., Mishima, Y., Ishihama, Y., & Imami, K. (2022) · iScience

RNA and protein synthesis mechanismsAdvanced Proteomics Techniques and Applications

Cited by 12

One-step N-terminomics based on isolation of protein N-terminal peptides from LysargiNase digests by tip-based strong cation exchange chromatography

Morikawa, K., Nishida, H., Imami, K., & Ishihama, Y. (2024) · Molecular & Cellular Proteomics

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 10

Quantitative nascent proteome profiling by dual-pulse labelling with O- propargyl-puromycin and stable isotope-labelled amino acids

Uchiyama, J., Ishihama, Y., & Imami, K. (2021) · The Journal of Biochemistry

Advanced Proteomics Techniques and ApplicationsRNA and protein synthesis mechanisms

Cited by 9

Quantitative nascent proteome profiling by dual pulse labeling with O -propargyl-puromycin and stable isotope labeled amino acids

Uchiyama, J., Ishihama, Y., & Imami, K. (2020) · The Journal of Biochemistry

Advanced Proteomics Techniques and ApplicationsRNA and protein synthesis mechanisms

Cited by 9