Pesole, Graziano

Assessing computational tools for the discovery of transcription factor binding sites

Tompa, M., Li, N., Bailey, T. L., Church, G. M., De Moor, B., Eskin, E., Favorov, A. V., Frith, M. C., Fu, Y., Kent, W. J., et al. (2005) · Nature Biotechnology

Genomics and Chromatin DynamicsGenomics and Phylogenetic Studies

Cited by 1,268

Untranslated regions of mRNAs.

Mignone, F., Gissi, C., Liuni, S., & Pesole, G. (2002) · Genome biology

RNA Research and SplicingRNA and protein synthesis mechanisms

Cited by 987

Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes

Zambelli, F., Pesole, G., & Pavesi, G. (2009) · Nucleic Acids Research

Genomics and Chromatin DynamicsGenomics and Phylogenetic Studies

Cited by 402

How genomics can help biodiversity conservation

Theissinger, K., Fernandes, C., Formenti, G., Bista, I., Berg, P. R., Bleidorn, C., Bombarely, A., Crottini, A., Gallo, G. R., Godoy, J. A., et al. (2023) · Trends in Genetics

Genomics and Phylogenetic StudiesGenetic diversity and population structure

Cited by 401

REDIportal: a comprehensive database of A-to-I RNA editing events in humans

Picardi, E., D'Erchia, A. M., Lo Giudice, C., & Pesole, G. (2017) · Nucleic Acids Research

RNA regulation and diseaseRNA Research and Splicing

Cited by 356

The era of reference genomes in conservation genomics

Formenti, G., Theissinger, K., Fernandes, C., Bista, I., Bombarely, A., Bleidorn, C., Ciofi, C., Crottini, A., Godoy, J. A., Höglund, J., et al. (2022) · Trends in Ecology & Evolution

Genomics and Phylogenetic StudiesGenetic diversity and population structure

Cited by 340

Tissue-specific mtDNA abundance from exome data and its correlation with mitochondrial transcription, mass and respiratory activity

D'Erchia, A. M., Atlante, A., Gadaleta, G., Pavesi, G., Chiara, M., De Virgilio, C., Manzari, C., Mastropasqua, F., Prazzoli, G. M., Picardi, E., et al. (2015) · Mitochondrion

Mitochondrial Function and PathologyGenomics and Phylogenetic Studies

Cited by 197

T follicular helper cells promote a beneficial gut ecosystem for host metabolic homeostasis by sensing microbiota-derived extracellular ATP

Perruzza, L., Gargari, G., Proietti, M., Fosso, B., D’Erchia, A. M., Faliti, C. E., Rezzonico-Jost, T., Scribano, D., Mauri, L., Colombo, D., et al. (2017) · Cell Reports

Adenosine and Purinergic SignalingGut microbiota and health

Cited by 114

Structural and compositional features of untranslated regions of eukaryotic mRNAs

Pesole, G., Liuni, S., Grillo, G., & Saccone, C. (1997) · Gene

RNA and protein synthesis mechanismsRNA Research and Splicing

Cited by 108

Metabolic framework of spontaneous and synthetic sourdough metacommunities to reveal microbial players responsible for resilience and performance

Calabrese, F. M., Ameur, H., Nikoloudaki, O., Celano, G., Vacca, M., Junior, W. J., Manzari, C., Vertè, F., Di Cagno, R., Pesole, G., et al. (2022) · Microbiome

Probiotics and Fermented FoodsGut microbiota and health

Cited by 85

Detection of ribonucleotides embedded in DNA by Nanopore sequencing

Grasso, L., Fonzino, A., Manzari, C., Leonardi, T., Picardi, E., Gissi, C., Lazzaro, F., Pesole, G., & Muzi-Falconi, M. (2024) · Communications Biology

Genomics and Phylogenetic StudiesNanopore and Nanochannel Transport Studies

Cited by 10