Gee, James C.

User-guided 3D active contour segmentation of anatomical structures: Significantly improved efficiency and reliability.

Yushkevich, P. A., Piven, J., Hazlett, H. C., Smith, R. G., Ho, S., Gee, J. C., & Gerig, G. (2006) · NeuroImage

Medical Image Segmentation TechniquesMedical Imaging and Analysis

Cited by 8,868

A reproducible evaluation of ANTs similarity metric performance in brain image registration

Avants, B. B., Tustison, N. J., Song, G., Cook, P. A., Klein, A., & Gee, J. C. (2011) · NeuroImage

Medical Image Segmentation TechniquesAdvanced MRI Techniques and Applications

Cited by 4,796

Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration

Klein, A., Andersson, J., Ardekani, B. A., Ashburner, J., Avants, B., Chiang, M.-C., Christensen, G. E., Collins, D. L., Gee, J., Hellier, P., et al. (2009) · NeuroImage

Medical Image Segmentation TechniquesAdvanced MRI Techniques and Applications

Cited by 2,227

A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain

Yao, Z., van Velthoven, C. T. J., Kunst, M., Zhang, M., McMillen, D., Lee, C., Jung, W., Goldy, J., Abdelhak, A., Aitken, M., et al. (2023) · Nature

Single-cell and spatial transcriptomicsCell Image Analysis Techniques

Cited by 1,203

Large-scale evaluation of ANTs and FreeSurfer cortical thickness measurements

Tustison, N. J., Cook, P. A., Klein, A., Song, G., Das, S. R., Duda, J. T., Kandel, B. M., van Strien, N., Stone, J. R., Gee, J. C., et al. (2014) · NeuroImage

Medical Image Segmentation TechniquesAdvanced Neuroimaging Techniques and Applications

Cited by 670

The Insight ToolKit image registration framework

Avants, B. B., Tustison, N. J., Stauffer, M., Song, G., Wu, B., & Gee, J. C. (2014) · Frontiers in Neuroinformatics

Medical Image Segmentation TechniquesAdvanced Radiotherapy Techniques

Cited by 658

The optimal template effect in hippocampus studies of diseased populations

Avants, B. B., Yushkevich, P., Pluta, J., Minkoff, D., Korczykowski, M., Detre, J., & Gee, J. C. (2010) · NeuroImage

Medical Image Segmentation TechniquesBrain Tumor Detection and Classification

Cited by 640

Spatial transformations of diffusion tensor magnetic resonance images

Alexander, D. C., Pierpaoli, C., Basser, P. J., & Gee, J. C. (2001) · IEEE Transactions on Medical Imaging

Advanced Neuroimaging Techniques and ApplicationsMedical Image Segmentation Techniques

Cited by 610

A multimodal cell census and atlas of the mammalian primary motor cortex

BRAIN Initiative Cell Census Network (BICCN), BRAIN Initiative Cell Census Network (BICCN) Corresponding authors, Callaway, E. M., Dong, H.-W., Ecker, J. R., Hawrylycz, M. J., Huang, Z. J., Lein, E. S., Ngai, J., Osten, P., et al. (2021) · Nature

Single-cell and spatial transcriptomicsGenomics and Chromatin Dynamics

Cited by 522

Early stress is associated with alterations in the orbitofrontal cortex: a tensor-based morphometry investigation of brain structure and behavioral risk

Hanson, J. L., Chung, M. K., Avants, B. B., Shirtcliff, E. A., Gee, J. C., Davidson, R. J., & Pollak, S. D. (2010) · The Journal of Neuroscience

Child Abuse and TraumaPsychopathy, Forensic Psychiatry, Sexual Offending

Cited by 455

An fMRI Study of Sex Differences in Regional Activation to a Verbal and a Spatial Task

Gur, R. C., Alsop, D., Glahn, D., Petty, R., Swanson, C. L., Maldjian, J. A., Turetsky, B. I., Detre, J. A., Gee, J., & Gur, R. E. (2000) · Brain and Language

Hemispheric Asymmetry in NeuroscienceNeurobiology of Language and Bilingualism

Cited by 352

Cellular Anatomy of the Mouse Primary Motor Cortex

Muñoz-Castañeda, R., Zingg, B., Matho, K. S., Wang, Q., Chen, X., Foster, N. N., Narasimhan, A., Li, A., Hirokawa, K. E., Huo, B., et al. (2020) · Nature

Single-cell and spatial transcriptomicsNeuroscience and Neuropharmacology Research

Cited by 270

Evaluation of volume-based and surface-based brain image registration methods

Klein, A., Ghosh, S. S., Avants, B., Yeo, B. T. T., Fischl, B., Ardekani, B., Gee, J. C., Mann, J. J., & Parsey, R. V. (2010) · NeuroImage

Medical Image Segmentation TechniquesFunctional Brain Connectivity Studies

Cited by 255

Cerebrospinal fluid profile in frontotemporal dementia and Alzheimer’s disease

Grossman, M., Farmer, J., Leight, S., Work, M., Moore, P., Van Deerlin, V., Pratico, D., Clark, C. M., Coslett, H. B., Chatterjee, A., et al. (2005) · Annals of Neurology

Dementia and Cognitive Impairment ResearchAlzheimer's disease research and treatments

Cited by 228

Structural variations in prefrontal cortex mediate the relationship between early childhood stress and spatial working memory

Hanson, J. L., Chung, M. K., Avants, B. B., Rudolph, K. D., Shirtcliff, E. A., Gee, J. C., Davidson, R. J., & Pollak, S. D. (2012) · Journal of Neuroscience

Neural and Behavioral Psychology StudiesStress Responses and Cortisol

Cited by 219

Early parental care is important for hippocampal maturation: Evidence from brain morphology in humans

Rao, H., Betancourt, L., Giannetta, J. M., Brodsky, N. L., Korczykowski, M., Avants, B. B., Gee, J. C., Wang, J., Hurt, H., Detre, J. A., et al. (2010) · NeuroImage

Child and Adolescent Psychosocial and Emotional DevelopmentNeuroendocrine regulation and behavior

Cited by 178

The DTI Challenge: Toward Standardized Evaluation of Diffusion Tensor Imaging Tractography for Neurosurgery

Pujol, S., Wells, W., Pierpaoli, C., Brun, C., Gee, J., Cheng, G., Vemuri, B., Commowick, O., Prima, S., Stamm, A., et al. (2015) · Journal of Neuroimaging

Advanced Neuroimaging Techniques and ApplicationsFunctional Brain Connectivity Studies

Cited by 171

Neuroanatomy of Apathy and Disinhibition in Frontotemporal Lobar Degeneration

Massimo, L., Powers, C., Moore, P., Vesely, L., Avants, B., Gee, J., Libon, D. J., & Grossman, M. (2009) · Dementia and Geriatric Cognitive Disorders

Dementia and Cognitive Impairment ResearchAmyotrophic Lateral Sclerosis Research

Cited by 156

Artificial intelligence system approaching neuroradiologist-level differential diagnosis accuracy at brain MRI

Rauschecker, A. M., Rudie, J. D., Xie, L., Wang, J., Duong, M. T., Botzolakis, E. J., Kovalovich, A. M., Egan, J., Cook, T. C., Bryan, R. N., et al. (2020) · Radiology

Artificial Intelligence in Healthcare and EducationBrain Tumor Detection and Classification

Cited by 148

Combining Deep Learning and Multi-atlas Label Fusion for Automated Placenta Segmentation from 3DUS

Oguz, B. U., Wang, J., Yushkevich, N., Pouch, A., Gee, J., Yushkevich, P. A., Schwartz, N., & Oguz, I. (2018) · Lecture Notes in Computer Science

Medical Image Segmentation TechniquesMedical Imaging and Analysis

Cited by 13

Minimally interactive placenta segmentation from three-dimensional ultrasound images

Oguz, I., Yushkevich, N., Pouch, A. M., Oguz, B. U., Wang, J., Parameshwaran, S., Gee, J. C., Yushkevich, P. A., & Schwartz, N. (2020) · Journal of Medical Imaging

Medical Image Segmentation TechniquesArtificial Intelligence in Healthcare and Education

Cited by 13

Fully Automated Placental Volume Quantification From 3D Ultrasound for Prediction of Small‐for‐Gestational‐Age Infants

Schwartz, N., Oguz, I., Wang, J., Pouch, A., Yushkevich, N., Parameshwaran, S., Gee, J., Yushkevich, P., & Oguz, B. (2022) · Journal of Ultrasound in Medicine

Medical Image Segmentation TechniquesArtificial Intelligence in Healthcare and Education

Cited by 11

Neuroanatomical and cellular degeneration associated with a social disorder characterized by new ritualistic belief systems in a TDP-C patient vs. a Pick patient

Ohm, D. T., Rhodes, E., Bahena, A., Capp, N., Lowe, M., Sabatini, P., Trotman, W., Olm, C. A., Phillips, J., Prabhakaran, K., et al. (2023) · Frontiers in Neurology

Dementia and Cognitive Impairment ResearchAmyotrophic Lateral Sclerosis Research

Cited by 6

Partial sparse canonical correlation analysis (PSCCA) for population studies in medical imaging

Dhillon, P. S., Avants, B., Ungar, L., & Gee, J. C. (2012) · 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI)

Statistical Methods and InferenceFunctional Brain Connectivity Studies

Cited by 2