Schaeffer, R. Dustin

Accurate prediction of protein structures and interactions using a 3-track network

Baek, M., DiMaio, F., Anishchenko, I., Dauparas, J., Ovchinnikov, S., Lee, G. R., Wang, J., Cong, Q., Kinch, L. N., Schaeffer, R. D., et al. (2021) · Science

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 5,549

ECOD: an evolutionary classification of protein domains

Cheng, H., Schaeffer, R. D., Liao, Y., Kinch, L. N., Pei, J., Shi, S., Kim, B.-H., & Grishin, N. V. (2014) · PLoS Computational Biology

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 426

DPAM: A Domain Parser for AlphaFold Models

Zhang, J., Schaeffer, R. D., Durham, J., Cong, Q., & Grishin, N. V. (2022) · Protein Science

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 49

ECOD domain classification of 48 whole proteomes from AlphaFold Structure Database using DPAM2

Schaeffer, R. D., Zhang, J., Medvedev, K. E., Kinch, L. N., Cong, Q., & Grishin, N. V. (2024) · PLOS Computational Biology

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 22

Structure classification of the proteins from Salmonella enterica pangenome revealed novel potential pathogenicity islands

Medvedev, K. E., Zhang, J., Schaeffer, R. D., Kinch, L. N., Cong, Q., & Grishin, N. V. (2024) · Scientific Reports

Salmonella and Campylobacter epidemiologyBacterial Genetics and Biotechnology

Cited by 11

DrugDomain: the evolutionary context of drugs and small molecules bound to domains

Medvedev, K. E., Schaeffer, R. D., & Grishin, N. V. (2024) · Protein Science

Computational Drug Discovery MethodsProtein Structure and Dynamics

Cited by 6

DrugDomain : The evolutionary context of drugs and small molecules bound to domains

Medvedev, K. E., Schaeffer, R. D., & Grishin, N. V. (2024) · Protein Science

Computational Drug Discovery MethodsProtein Structure and Dynamics

Cited by 6

ECOD: Classification of domains in AFDB Swiss-Prot structure predictions

Schaeffer, R. D., Zhang, J., Cong, Q., & Grishin, N. V. (2026) · PLOS Computational Biology

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 2

DrugDomain 2.0: Comprehensive database of protein domains-ligands/drugs interactions across the whole Protein Data Bank

Medvedev, K. E., Schaeffer, R. D., & Grishin, N. V. (2025) · Computational and Structural Biotechnology Journal

Computational Drug Discovery MethodsProtein Structure and Dynamics

Cited by 1

DrugDomain 2.0: comprehensive database of protein domains-ligands/drugs interactions across the whole Protein Data Bank

Medvedev, K. E., Schaeffer, R. D., & Grishin, N. V. (2025) · Computational and Structural Biotechnology Journal

Computational Drug Discovery MethodsProtein Structure and Dynamics

Cited by 1