Funke, Jan

Neuronal wiring diagram of an adult brain

Dorkenwald, S., Matsliah, A., Sterling, A. R., Schlegel, P., Yu, S.-C., McKellar, C. E., Lin, A., Costa, M., Eichler, K., Yin, Y., et al. (2024) · Nature

Neurobiology and Insect Physiology ResearchNeuroscience and Neuropharmacology Research

Cited by 570

Whole-brain annotation and multi-connectome cell typing of Drosophila

Schlegel, P., Yin, Y., Bates, A. S., Dorkenwald, S., Eichler, K., Brooks, P., Han, D. S., Gkantia, M., dos Santos, M., Munnelly, E. J., et al. (2024) · Nature

Neurobiology and Insect Physiology ResearchCell Image Analysis Techniques

Cited by 413

Neurotransmitter classification from electron microscopy images at synaptic sites in Drosophila melanogaster

Eckstein, N., Bates, A. S., Champion, A., Du, M., Yin, Y., Schlegel, P., Lu, A. K.-Y., Rymer, T., Finley-May, S., Paterson, T., et al. (2024) · Cell

Neurobiology and Insect Physiology ResearchCell Image Analysis Techniques

Cited by 277

Reconstruction of motor control circuits in adult drosophila using automated transmission electron microscopy

Phelps, J. S., Hildebrand, D. G. C., Graham, B. J., Kuan, A. T., Thomas, L. A., Nguyen, T. M., Buhmann, J., Azevedo, A. W., Sustar, A., Agrawal, S., et al. (2021) · Cell

Neurobiology and Insect Physiology ResearchAdvanced Electron Microscopy Techniques and Applications

Cited by 265

Automatic detection of synaptic partners in a whole-brain Drosophila electron microscopy data set

Buhmann, J., Sheridan, A., Malin-Mayor, C., Schlegel, P., Gerhard, S., Kazimiers, T., Krause, R., Nguyen, T. M., Heinrich, L., Lee, W.-C. A., et al. (2021) · Nature Methods

Cell Image Analysis TechniquesNeurobiology and Insect Physiology Research

Cited by 175

Dense neuronal reconstruction through X-ray holographic nano-tomography

Kuan, A. T., Phelps, J. S., Thomas, L. A., Nguyen, T. M., Han, J., Chen, C.-L., Azevedo, A. W., Tuthill, J. C., Funke, J., Cloetens, P., et al. (2020) · Nature Neuroscience

Advanced X-ray Imaging TechniquesNeurobiology and Insect Physiology Research

Cited by 160

Neuronal wiring diagram of an adult brain

Dorkenwald, S., Matsliah, A., Sterling, A. R., Schlegel, P., Yu, S.-C., McKellar, C. E., Lin, A., Costa, M., Eichler, K., Yin, Y., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory)

Neurobiology and Insect Physiology ResearchCell Image Analysis Techniques

Cited by 149

Network statistics of the whole-brain connectome of Drosophila

Lin, A., Yang, R., Dorkenwald, S., Matsliah, A., Sterling, A. R., Schlegel, P., Yu, S.-C., McKellar, C. E., Costa, M., Eichler, K., et al. (2024) · Nature

Functional Brain Connectivity StudiesNeurobiology and Insect Physiology Research

Cited by 147

Network Statistics of the Whole-Brain Connectome of Drosophila

Lin, A., Yang, R., Dorkenwald, S., Matsliah, A., Sterling, A. R., Schlegel, P., Yu, S.-C., McKellar, C. E., Costa, M., Eichler, K., et al. (2023) · Nature

Functional Brain Connectivity StudiesNeurobiology and Insect Physiology Research

Cited by 147

Synaptic Cleft Segmentation in Non-isotropic Volume Electron Microscopy of the Complete Drosophila Brain

Heinrich, L., Funke, J., Pape, C., Nunez-Iglesias, J., & Saalfeld, S. (2018) · Lecture Notes in Computer Science

Cell Image Analysis TechniquesMedical Image Segmentation Techniques

Cited by 117

Neurotransmitter Classification from Electron Microscopy Images at Synaptic Sites in Drosophila Melanogaster

Eckstein, N., Bates, A. S., Champion, A., Du, M., Yin, Y., Schlegel, P., Lu, A. K.-Y., Rymer, T., Finley-May, S., Paterson, T., et al. (2020) · bioRxiv (Cold Spring Harbor Laboratory)

Neurobiology and Insect Physiology ResearchCell Image Analysis Techniques

Cited by 115

A leaky integrate-and-fire computational model based on the connectome of the entire adult Drosophila brain reveals insights into sensorimotor processing

Shiu, P. K., Sterne, G. R., Spiller, N., Franconville, R., Sandoval, A., Zhou, J., Simha, N., Kang, C. H., Yu, S., Kim, J. S., et al. (2023) · Nature

Neurobiology and Insect Physiology ResearchNeural dynamics and brain function

Cited by 98

Connectome-driven neural inventory of a complete visual system

Nern, A., Loesche, F., Takemura, S.-Y., Burnett, L. E., Dreher, M., Gruntman, E., Hoeller, J., Huang, G. B., Januszewski, M., Klapoetke, N. C., et al. (2024) · Nature

Neurobiology and Insect Physiology ResearchVisual perception and processing mechanisms

Cited by 98

A Drosophila computational brain model reveals sensorimotor processing

Shiu, P. K., Sterne, G. R., Spiller, N., Franconville, R., Sandoval, A., Zhou, J., Simha, N., Kang, C. H., Yu, S., Kim, J. S., et al. (2024) · Nature

Neurobiology and Insect Physiology ResearchNeural dynamics and brain function

Cited by 97

A Connectome of the Male Drosophila Ventral Nerve Cord

Takemura, S.-Y., Hayworth, K. J., Huang, G. B., Januszewski, M., Lu, Z., Marin, E. C., Preibisch, S., Xu, C. S., Bogovic, J., Champion, A. S., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory)

Neurobiology and Insect Physiology ResearchNeuroscience and Neuropharmacology Research

Cited by 74

Neural network organization for courtship-song feature detection in Drosophila

Baker, C. A., McKellar, C., Pang, R., Nern, A., Dorkenwald, S., Pacheco, D. A., Eckstein, N., Funke, J., Dickson, B. J., & Murthy, M. (2022) · Current Biology

Neurobiology and Insect Physiology ResearchNeural dynamics and brain function

Cited by 57

A Connectome of the Male Drosophila Ventral Nerve Cord

Takemura, S.-Y., Hayworth, K. J., Huang, G. B., Januszewski, M., Lu, Z., Marin, E. C., Preibisch, S., Xu, C. S., Bogovic, J., Champion, A. S., et al. (2024) · eLife

Neurobiology and Insect Physiology ResearchNeuroscience and Neuropharmacology Research

Cited by 54

Automatic Detection of Synaptic Partners in a Whole-Brain Drosophila EM Dataset

Buhmann, J., Sheridan, A., Gerhard, S., Krause, R., Nguyen, T., Heinrich, L., Schlegel, P., Lee, W.-C. A., Wilson, R., Saalfeld, S., et al. (2019) · bioRxiv (Cold Spring Harbor Laboratory)

Cell Image Analysis TechniquesNeurobiology and Insect Physiology Research

Cited by 21

Discriminative attribution from paired images

Eckstein, N., Bukhari, H., Bates, A. S., Jefferis, G. S. X. E., & Funke, J. (2023) · Lecture Notes in Computer Science

Explainable Artificial Intelligence (XAI)Advanced Neural Network Applications

Cited by 5