Cong, Qian

Accurate prediction of protein structures and interactions using a 3-track network

Baek, M., DiMaio, F., Anishchenko, I., Dauparas, J., Ovchinnikov, S., Lee, G. R., Wang, J., Cong, Q., Kinch, L. N., Schaeffer, R. D., et al. (2021) · Science

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 5,549

Phosphorylation of innate immune adaptor proteins MAVS, STING, and TRIF induces IRF3 activation

Liu, S., Cai, X., Wu, J., Cong, Q., Chen, X., Li, T., Du, F., Ren, J., Wu, Y.-T., Grishin, N. V., et al. (2015) · Science

interferon and immune responsesImmune Response and Inflammation

Cited by 1,927

Computed structures of core eukaryotic protein complexes

Humphreys, I. R., Pei, J., Baek, M., Krishnakumar, A., Anishchenko, I., Ovchinnikov, S., Zhang, J., Ness, T. J., Banjade, S., Bagde, S. R., et al. (2021) · Science

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 542

Structures of core eukaryotic protein complexes

Humphreys, I. R., Pei, J., Baek, M., Krishnakumar, A., Anishchenko, I., Ovchinnikov, S., Zhang, J., Ness, T. J., Banjade, S., Bagde, S., et al. (2021) · Science

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 541

Protein interaction networks revealed by proteome coevolution

Cong, Q., Anishchenko, I., Ovchinnikov, S., & Baker, D. (2019) · Science

Bioinformatics and Genomic NetworksProtein Structure and Dynamics

Cited by 241

Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle

Wang, Y., Gallagher, L. A., Andrade, P. A., Liu, A., Humphreys, I. R., Turkarslan, S., Cutler, K. J., Arrieta-Ortiz, M. L., Li, Y., Radey, M. C., et al. (2023) · Cell

Bacterial Genetics and BiotechnologyMicrobial Community Ecology and Physiology

Cited by 108

A tissue injury sensing and repair pathway distinct from host pathogen defense

Liu, S., Hur, Y. H., Cai, X., Cong, Q., Yang, Y., Xu, C., Bilate, A. M., Gonzales, K. A. U., Parigi, S. M., Cowley, C. J., et al. (2023) · Cell

Wound Healing and TreatmentsCytokine Signaling Pathways and Interactions

Cited by 108

Predicting protein-protein interactions in the human proteome

Zhang, J., Humphreys, I. R., Pei, J., Kim, J., Choi, C., Yuan, R., Durham, J., Liu, S., Choi, H.-J., Baek, M., et al. (2025) · Science

Bioinformatics and Genomic NetworksProtein Structure and Dynamics

Cited by 87

Assessment of Nucleic Acid Structure Prediction in CASP16

Kretsch, R. C., Hummer, A. M., He, S., Yuan, R., Zhang, J., Karagianes, T., Cong, Q., Kryshtafovych, A., & Das, R. (2026) · Proteins: Structure, Function, and Bioinformatics

RNA and protein synthesis mechanismsProtein Structure and Dynamics

Cited by 51

DPAM: A Domain Parser for AlphaFold Models

Zhang, J., Schaeffer, R. D., Durham, J., Cong, Q., & Grishin, N. V. (2022) · Protein Science

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 49

Human mitochondrial protein complexes revealed by large-scale coevolution analysis and deep learning-based structure modeling

Pei, J., Zhang, J., & Cong, Q. (2022) · Bioinformatics

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 35

Human mitochondrial protein complexes revealed by large-scale coevolution analysis and deep learning-based structure modeling

Pei, J., Zhang, J., & Cong, Q. (2021) · Bioinformatics

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 35

Computed cancer interactome explains the effects of somatic mutations in cancers

Zhang, J., Pei, J., Durham, J., Bos, T., & Cong, Q. (2022) · Protein Science

Bioinformatics and Genomic NetworksProtein Structure and Dynamics

Cited by 31

Computed cancer interactome explains the effects of somatic mutations in cancers

Zhang, J., Pei, J., Durham, J., Bos, T., & Cong, Q. (2022) · Protein Science

Bioinformatics and Genomic NetworksProtein Structure and Dynamics

Cited by 31

Co-Component Signal Transduction Systems: fast-evolving virulence regulation cassettes discovered in enteric bacteria

Kinch, L. N., Cong, Q., Jaishankar, J., & Orth, K. (2022) · Proceedings of the National Academy of Sciences

Bacterial Genetics and BiotechnologyEscherichia coli research studies

Cited by 25

ECOD domain classification of 48 whole proteomes from AlphaFold Structure Database using DPAM2

Schaeffer, R. D., Zhang, J., Medvedev, K. E., Kinch, L. N., Cong, Q., & Grishin, N. V. (2024) · PLOS Computational Biology

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 22

Structure classification of the proteins from Salmonella enterica pangenome revealed novel potential pathogenicity islands

Medvedev, K. E., Zhang, J., Schaeffer, R. D., Kinch, L. N., Cong, Q., & Grishin, N. V. (2024) · Scientific Reports

Salmonella and Campylobacter epidemiologyBacterial Genetics and Biotechnology

Cited by 11

ECOD: Classification of domains in AFDB Swiss-Prot structure predictions

Schaeffer, R. D., Zhang, J., Cong, Q., & Grishin, N. V. (2026) · PLOS Computational Biology

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 2

ECOD: Classification of domains in AFDB Swiss-Prot structure predictions

Schaeffer, R., Zhang, J., Cong, Q., & Grishin, N. (2025) · PLoS Computational Biology

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 2