Simakov, Oleg

Genome evolution in the allotetraploid frog Xenopus laevis

Session, A. M., Uno, Y., Kwon, T., Chapman, J. A., Toyoda, A., Takahashi, S., Fukui, A., Hikosaka, A., Suzuki, A., Kondo, M., et al. (2016) · Nature

Chromosomal and Genetic VariationsGenomics and Phylogenetic Studies

Cited by 949

The dynamic genome of Hydra

Chapman, J. A., Kirkness, E. F., Simakov, O., Hampson, S. E., Mitros, T., Weinmaier, T., Rattei, T., Balasubramanian, P. G., Borman, J., Busam, D., et al. (2010) · Nature

Marine Invertebrate Physiology and EcologyDevelopmental Biology and Gene Regulation

Cited by 810

Insights into bilaterian evolution from three spiralian genomes

Simakov, O., Marletaz, F., Cho, S.-J., Edsinger-Gonzales, E., Havlak, P., Hellsten, U., Kuo, D.-H., Larsson, T., Lv, J., Arendt, D., et al. (2013) · Nature

Genomics and Phylogenetic StudiesMarine Invertebrate Physiology and Ecology

Cited by 656

Deeply conserved synteny resolves early events in vertebrate evolution

Simakov, O., Marlétaz, F., Yue, J.-X., O’Connell, B., Jenkins, J., Brandt, A., Calef, R., Tung, C.-H., Huang, T.-K., Schmutz, J., et al. (2020) · Nature Ecology & Evolution

Chromosomal and Genetic VariationsGenome Rearrangement Algorithms

Cited by 363

Ancient gene linkages support ctenophores as sister to other animals

Schultz, D. T., Haddock, S. H. D., Bredeson, J. V., Green, R. E., Simakov, O., & Rokhsar, D. S. (2023) · Nature

Marine Invertebrate Physiology and EcologyProtist diversity and phylogeny

Cited by 362

Expression of secreted Wnt pathway components reveals unexpected complexity of the planarian amputation response

Gurley, K. A., Elliott, S. A., Simakov, O., Schmidt, H. A., Holstein, T. W., & Alvarado, A. S. (2010) · Developmental Biology

Planarian Biology and ElectrostimulationWnt/β-catenin signaling in development and cancer

Cited by 212

Giant lungfish genome elucidates the conquest of land by vertebrates

Meyer, A., Schloissnig, S., Franchini, P., Du, K., Woltering, J. M., Irisarri, I., Wong, W. Y., Nowoshilow, S., Kneitz, S., Kawaguchi, A., et al. (2021) · Nature

Chromosomal and Genetic VariationsGenomics and Phylogenetic Studies

Cited by 211

Deeply conserved synteny and the evolution of metazoan chromosomes

Simakov, O., Bredeson, J., Berkoff, K., Marletaz, F., Mitros, T., Schultz, D. T., O’Connell, B. L., Dear, P., Martinez, D. E., Steele, R. E., et al. (2022) · Science Advances

Chromosomal and Genetic VariationsGenome Rearrangement Algorithms

Cited by 197

Microchromosomes are building blocks of bird, reptile, and mammal chromosomes

Waters, P. D., Patel, H. R., Ruiz-Herrera, A., Álvarez-González, L., Lister, N. C., Simakov, O., Ezaz, T., Kaur, P., Frere, C., Grützner, F., et al. (2021) · Proceedings of the National Academy of Sciences

Chromosomal and Genetic VariationsGenome Rearrangement Algorithms

Cited by 153

Topological structures and syntenic conservation in sea anemone genomes

Zimmermann, B., Montenegro, J. D., Robb, S. M. C., Fropf, W. J., Weilguny, L., He, S., Chen, S., Lovegrove-Walsh, J., Hill, E. M., Chen, C.-Y., et al. (2023) · Nature Communications

Chromosomal and Genetic VariationsMarine Invertebrate Physiology and Ecology

Cited by 106

Development of the annelid axochord: Insights into notochord evolution

Lauri, A., Brunet, T., Handberg-Thorsager, M., Fischer, A. H. L., Simakov, O., Steinmetz, P. R. H., Tomer, R., Keller, P. J., & Arendt, D. (2014) · Science

Developmental Biology and Gene RegulationMarine Invertebrate Physiology and Ecology

Cited by 104

Emergence of novel cephalopod gene regulation and expression through large-scale genome reorganization

Schmidbaur, H., Kawaguchi, A., Clarence, T., Fu, X., Hoang, O. P., Zimmermann, B., Ritschard, E. A., Weissenbacher, A., Foster, J. S., Nyholm, S. V., et al. (2022) · Nature Communications

Cephalopods and Marine BiologyChromosomal and Genetic Variations

Cited by 66

A chromosome-scale epigenetic map of the Hydra genome reveals conserved regulators of cell state

Cazet, J. F., Siebert, S., Little, H. M., Bertemes, P., Primack, A. S., Ladurner, P., Achrainer, M., Fredriksen, M. T., Moreland, R. T., Singh, S., et al. (2023) · Genome Research

Marine Invertebrate Physiology and EcologyGenomics and Chromatin Dynamics

Cited by 66

The mole genome reveals regulatory rearrangements associated with adaptive intersexuality

M. Real, F., Haas, S. A., Franchini, P., Xiong, P., Simakov, O., Kuhl, H., Schöpflin, R., Heller, D., Moeinzadeh, M.-H., Heinrich, V., et al. (2020) · Science

Genetic and Clinical Aspects of Sex Determination and Chromosomal AbnormalitiesSexual Differentiation and Disorders

Cited by 66

The Aquatic Symbiosis Genomics Project: probing the evolution of symbiosis across the tree of life

McKenna, V., Archibald, J. M., Beinart, R., Dawson, M. N., Hentschel, U., Keeling, P. J., Lopez, J. V., Martín-Durán, J. M., Petersen, J. M., Sigwart, J. D., et al. (2021) · Wellcome Open Research

Protist diversity and phylogenyGenomics and Phylogenetic Studies

Cited by 62

A chromosome-level reference genome for the common octopus, Octopus vulgaris (Cuvier, 1797)

Destanović, D., Schultz, D. T., Styfhals, R., Cruz, F., Gómez-Garrido, J., Gut, M., Gut, I., Fiorito, G., Simakov, O., Alioto, T. S., et al. (2023) · G3: Genes, Genomes, Genetics

Cephalopods and Marine BiologyGenomics and Phylogenetic Studies

Cited by 36

Topological Approaches in Animal Comparative Genomics

Schultz, D. T., & Simakov, O. (2026) · Annual Review of Animal Biosciences

Chromosomal and Genetic VariationsGenomics and Phylogenetic Studies

Cited by 1