Lenhard, Boris

The accessible chromatin landscape of the human genome

Thurman, R. E., Rynes, E., Humbert, R., Vierstra, J., Maurano, M. T., Haugen, E., Sheffield, N. C., Stergachis, A. B., Wang, H., Vernot, B., et al. (2012) · Nature

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 2,679

JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles

Castro-Mondragon, J. A., Riudavets-Puig, R., Rauluseviciute, I., Berhanu Lemma, R., Turchi, L., Blanc-Mathieu, R., Lucas, J., Boddie, P., Khan, A., Manosalva Pérez, N., et al. (2022) · Nucleic Acids Research

Genomics and Chromatin DynamicsGenomics and Phylogenetic Studies

Cited by 1,935

JASPAR 2020: update of the open-access database of transcription factor binding profiles

Fornes, O., Castro-Mondragon, J. A., Khan, A., van der Lee, R., Zhang, X., Richmond, P. A., Modi, B. P., Correard, S., Gheorghe, M., Baranašić, D., et al. (2019) · Nucleic Acids Research

Genomics and Chromatin DynamicsGenomics and Phylogenetic Studies

Cited by 1,763

Genome-wide analysis of mammalian promoter architecture and evolution

Carninci, P., Sandelin, A., Lenhard, B., Katayama, S., Shimokawa, K., Ponjavic, J., Semple, C. A. M., Taylor, M. S., Engström, P. G., Frith, M. C., et al. (2006) · Nature Genetics

Genomics and Chromatin DynamicsGenomics and Phylogenetic Studies

Cited by 1,350

JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles

Mathelier, A., Fornes, O., Arenillas, D. J., Chen, C.-Y., Denay, G., Lee, J., Shi, W., Shyr, C., Tan, G., Worsley-Hunt, R., et al. (2016) · Nucleic Acids Research

Genomics and Chromatin DynamicsGenomics and Phylogenetic Studies

Cited by 937

An atlas of combinatorial transcriptional regulation in mouse and man

Ravasi, T., Suzuki, H., Cannistraci, C. V., Katayama, S., Bajic, V. B., Tan, K., Akalin, A., Schmeier, S., Kanamori-Katayama, M., Bertin, N., et al. (2010) · Cell

Genomics and Chromatin DynamicsGene Regulatory Network Analysis

Cited by 715

Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments

Seitan, V. C., Faure, A. J., Zhan, Y., McCord, R. P., Lajoie, B. R., Ing-Simmons, E., Lenhard, B., Giorgetti, L., Heard, E., Fisher, A. G., et al. (2013) · Genome Research

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 318

Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate

Denoeud, F., Henriet, S., Mungpakdee, S., Aury, J.-M., Da Silva, C., Brinkmann, H., Mikhaleva, J., Olsen, L. C., Jubin, C., Cañestro, C., et al. (2010) · Science

Chromosomal and Genetic VariationsGenomics and Phylogenetic Studies

Cited by 285

Epigenetic reprogramming enables the transition from primordial germ cell to gonocyte

Hill, P. W. S., Leitch, H. G., Requena, C. E., Sun, Z., Amouroux, R., Roman-Trufero, M., Borkowska, M., Terragni, J., Vaisvila, R., Linnett, S., et al. (2018) · Nature

Epigenetics and DNA MethylationGenetic Syndromes and Imprinting

Cited by 272

Sox2 cooperates with Chd7 to regulate genes that are mutated in human syndromes

Engelen, E., Akinci, U., Bryne, J. C., Hou, J., Gontan, C., Moen, M., Szumska, D., Kockx, C., van IJcken, W., Dekkers, D. H. W., et al. (2011) · Nature Genetics

Congenital Ear and Nasal AnomaliesDevelopmental Biology and Gene Regulation

Cited by 255

The genome-wide dynamics of the binding of Ldb1 complexes during erythroid differentiation

Soler, E., Andrieu-Soler, C., de Boer, E., Bryne, J. C., Thongjuea, S., Stadhouders, R., Palstra, R.-J., Stevens, M., Kockx, C., van IJcken, W., et al. (2010) · Genes & Development

Genomics and Chromatin DynamicsHemoglobinopathies and Related Disorders

Cited by 245

Long-range gene regulation links genomic type 2 diabetes and obesity risk regions to HHEX , SOX4 , and IRX3

Ragvin, A., Moro, E., Fredman, D., Navratilova, P., Drivenes, Ø., Engström, P. G., Alonso, M. E., Mustienes, E. D. L. C., Skarmeta, J. L. G., Tavares, M. J., et al. (2010) · Proceedings of the National Academy of Sciences

Genomics and Chromatin DynamicsPancreatic function and diabetes

Cited by 211

Control of inducible gene expression links cohesin to hematopoietic progenitor self-renewal and differentiation

Cuartero, S., Weiss, F. D., Dharmalingam, G., Guo, Y., Ing-Simmons, E., Masella, S., Robles-Rebollo, I., Xiao, X., Wang, Y.-F., Barozzi, I., et al. (2018) · Nature Immunology

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 210

Two independent transcription initiation codes overlap on vertebrate core promoters

Haberle, V., Li, N., Hadzhiev, Y., Plessy, C., Previti, C., Nepal, C., Gehrig, J., Dong, X., Akalin, A., Suzuki, A. M., et al. (2014) · Nature

Genomics and Chromatin DynamicsDevelopmental Biology and Gene Regulation

Cited by 180

Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin

Ing-Simmons, E., Seitan, V. C., Faure, A. J., Flicek, P., Carroll, T., Dekker, J., Fisher, A. G., Lenhard, B., & Merkenschlager, M. (2015) · Genome Research

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 167

Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis

Nepal, C., Hadzhiev, Y., Previti, C., Haberle, V., Li, N., Takahashi, H., Suzuki, A. M. M., Sheng, Y., Abdelhamid, R. F., Anand, S., et al. (2013) · Genome Research

Genomics and Chromatin DynamicsGenomics and Phylogenetic Studies

Cited by 127

Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements

Baranasic, D., Hörtenhuber, M., Balwierz, P. J., Zehnder, T., Mukarram, A. K., Nepal, C., Várnai, C., Hadzhiev, Y., Jimenez-Gonzalez, A., Li, N., et al. (2022) · Nature Genetics

Genomics and Chromatin DynamicsZebrafish Biomedical Research Applications

Cited by 101

The male germ cell gene regulator CTCFL is functionally different from CTCF and binds CTCF-like consensus sites in a nucleosome composition-dependent manner

Sleutels, F., Soochit, W., Bartkuhn, M., Heath, H., Dienstbach, S., Bergmaier, P., Franke, V., Rosa-Garrido, M., van de Nobelen, S., Caesar, L., et al. (2012) · Epigenetics & Chromatin

Sperm and Testicular FunctionGenomics and Chromatin Dynamics

Cited by 96

Dual-initiation promoters with intertwined canonical and TCT/TOP transcription start sites diversify transcript processing

Nepal, C., Hadzhiev, Y., Balwierz, P., Tarifeño-Saldivia, E., Cardenas, R., Wragg, J. W., Suzuki, A.-M., Carninci, P., Peers, B., Lenhard, B., et al. (2020) · Nature Communications

Genomics and Chromatin DynamicsRNA Research and Splicing

Cited by 52

Transcriptional, post-transcriptional and chromatin-associated regulation of pri-miRNAs, pre-miRNAs and moRNAs

Nepal, C., Coolen, M., Hadzhiev, Y., Cussigh, D., Mydel, P., Steen, V. M., Carninci, P., Andersen, J. B., Bally-Cuif, L., Müller, F., et al. (2016) · Nucleic Acids Research

MicroRNA in disease regulationGenomics and Chromatin Dynamics

Cited by 35

Predicting gene expression from histone marks using chromatin deep learning models depends on histone mark function, regulatory distance and cellular states

Murphy, A. E., Askarova, A., Lenhard, B., Skene, N. G., & Marzi, S. J. (2025) · Nucleic Acids Research

Genomics and Chromatin DynamicsEpigenetics and DNA Methylation

Cited by 10