Li, Yingrui

A metagenome-wide association study of gut microbiota in type 2 diabetes

Qin, J., Li, Y., Cai, Z., Li, S., Zhu, J., Zhang, F., Liang, S., Zhang, W., Guan, Y., Shen, D., et al. (2012) · Nature

Gut microbiota and healthOral microbiology and periodontitis research

Cited by 6,762

SOAP: Short oligonucleotide alignment program

Li, R., Li, Y., Kristiansen, K., & Wang, J. (2008) · Bioinformatics

Genomics and Phylogenetic StudiesAlgorithms and Data Compression

Cited by 3,597

De novo assembly of human genomes with massively parallel short read sequencing

Li, R., Zhu, H., Ruan, J., Qian, W., Fang, X., Shi, Z., Li, Y., Li, S., Shan, G., Kristiansen, K., et al. (2010) · Genome Research

Genomics and Phylogenetic StudiesAlgorithms and Data Compression

Cited by 2,926

The oral and gut microbiomes are perturbed in rheumatoid arthritis and partly normalized after treatment

Zhang, X., Zhang, D., Jia, H., Feng, Q., Wang, D., Liang, D., Wu, X., Li, J., Tang, L., Li, Y., et al. (2015) · Nature Medicine

Gut microbiota and healthRheumatoid Arthritis Research and Therapies

Cited by 1,690

Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude

Yi, X., Liang, Y., Huerta-Sanchez, E., Jin, X., Cuo, Z. X. P., Pool, J. E., Xu, X., Jiang, H., Vinckenbosch, N., Korneliussen, T. S., et al. (2010) · Science

High Altitude and HypoxiaForensic and Genetic Research

Cited by 1,611

A Systematic Survey of Loss-of-Function Variants in Human Protein-Coding Genes

MacArthur, D. G., Balasubramanian, S., Frankish, A., Huang, N., Morris, J., Walter, K., Jostins, L., Habegger, L., Pickrell, J. K., Montgomery, S. B., et al. (2012) · Science

Genomics and Rare DiseasesGenetic Associations and Epidemiology

Cited by 1,272

Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA

Huerta-Sánchez, E., Jin, X., Asan, Bianba, Z., Peter, B. M., Vinckenbosch, N., Liang, Y., Yi, X., He, M., Somel, M., et al. (2014) · Nature

High Altitude and HypoxiaForensic and Genetic Research

Cited by 1,208

The sequence and de novo assembly of the giant panda genome

Li, R., Fan, W., Tian, G., Zhu, H., He, L., Cai, J., Huang, Q., Cai, Q., Li, B., Bai, Y., et al. (2010) · Nature

Genomics and Phylogenetic StudiesChromosomal and Genetic Variations

Cited by 1,180

Mapping copy number variation by population-scale genome sequencing

1000 Genomes Project, Mills, R. E., Walter, K., Stewart, C., Handsaker, R. E., Chen, K., Alkan, C., Abyzov, A., Yoon, S. C., Ye, K., et al. (2011) · Nature

Genomic variations and chromosomal abnormalitiesGenome Rearrangement Algorithms

Cited by 1,140

SNP detection for massively parallel whole-genome resequencing

Li, R., Li, Y., Fang, X., Yang, H., Wang, J., Kristiansen, K., & Wang, J. (2009) · Genome Research

Genomics and Phylogenetic StudiesGenomics and Rare Diseases

Cited by 944

The diploid genome sequence of an Asian individual

Wang, J., Wang, W., Li, R., Li, Y., Tian, G., Goodman, L., Fan, W., Zhang, J., Li, J., Zhang, J., et al. (2008) · Nature

Genomics and Phylogenetic StudiesForensic and Genetic Research

Cited by 924

Sparse whole-genome sequencing identifies two loci for major depressive disorder

CONVERGE consortium, Cai, N., Bigdeli, T. B., Kretzschmar, W., Li, Y., Liang, J., Song, L., Hu, J., Li, Q., Jin, W., et al. (2015) · Nature

Genetic Associations and EpidemiologyTreatment of Major Depression

Cited by 864

Ancient human genome sequence of an extinct Palaeo-Eskimo

Rasmussen, M., Li, Y., Lindgreen, S., Pedersen, J. S., Albrechtsen, A., Moltke, I., Metspalu, M., Metspalu, E., Kivisild, T., Gupta, R., et al. (2010) · Nature

Forensic and Genetic ResearchPleistocene-Era Hominins and Archaeology

Cited by 849

Whole-Genome Sequencing in Autism Identifies Hot Spots for De Novo Germline Mutation

Michaelson, J. J., Shi, Y., Gujral, M., Zheng, H., Malhotra, D., Jin, X., Jian, M., Liu, G., Greer, D., Bhandari, A., et al. (2012) · Cell

Autism Spectrum Disorder ResearchGenomic variations and chromosomal abnormalities

Cited by 544

Single-Cell Exome Sequencing and Monoclonal Evolution of a JAK2-Negative Myeloproliferative Neoplasm

Hou, Y., Song, L., Zhu, P., Zhang, B., Tao, Y., Xu, X., Li, F., Wu, K., Liang, J., Shao, D., et al. (2012) · Cell

Cancer Genomics and DiagnosticsMyeloproliferative Neoplasms: Diagnosis and Treatment

Cited by 541

Detection of Clinically Relevant Genetic Variants in Autism Spectrum Disorder by Whole-Genome Sequencing

Jiang, Y.-H., Yuen, R. K. C., Jin, X., Wang, M., Chen, N., Wu, X., Ju, J., Mei, J., Shi, Y., He, M., et al. (2013) · The American Journal of Human Genetics

Autism Spectrum Disorder ResearchGenetics and Neurodevelopmental Disorders

Cited by 474

SNP Calling, Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data

Nielsen, R., Korneliussen, T., Albrechtsen, A., Li, Y., & Wang, J. (2012) · PLoS ONE

Genomics and Phylogenetic StudiesGenetic Associations and Epidemiology

Cited by 424

Genome-wide characteristics of de novo mutations in autism

Yuen, R. K., Merico, D., Cao, H., Pellecchia, G., Alipanahi, B., Thiruvahindrapuram, B., Tong, X., Sun, Y., Cao, D., Zhang, T., et al. (2016) · npj Genomic Medicine

Autism Spectrum Disorder ResearchGenetics and Neurodevelopmental Disorders

Cited by 216

Targeted Gene Correction Minimally Impacts Whole-Genome Mutational Load in Human-Disease-Specific Induced Pluripotent Stem Cell Clones

Suzuki, K., Yu, C., Qu, J., Li, M., Yao, X., Yuan, T., Goebl, A., Tang, S., Ren, R., Aizawa, E., et al. (2014) · Cell Stem Cell

CRISPR and Genetic EngineeringVirus-based gene therapy research

Cited by 169

COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly

Liu, B., Yuan, J., Yiu, S.-M., Li, Z., Xie, Y., Chen, Y., Shi, Y., Zhang, H., Li, Y., Lam, T.-W., et al. (2012) · Bioinformatics

Genomics and Phylogenetic StudiesAlgorithms and Data Compression

Cited by 138