Rost, Burkhard

Engineering indel and substitution variants of diverse and ancient enzymes using Graphical Representation of Ancestral Sequence Predictions (GRASP)

Foley, G., Mora, A., Ross, C. M., Bottoms, S., Sützl, L., Lamprecht, M. L., Zaugg, J., Essebier, A., Balderson, B., Newell, R., et al. (2022) · PLOS Computational Biology

Genomics and Phylogenetic StudiesProtein Structure and Dynamics

Cited by 70

Whole-genome prediction of bacterial pathogenic capacity on novel bacteria using protein language models, with PathogenFinder2

Ferrer Florensa, A., Almagro Armenteros, J. J., Kaas, R. S., Conradsen Clausen, P. T. L., Nielsen, H., Rost, B., & Aarestrup, F. M. (2025) · Bioinformatics

Genomics and Phylogenetic StudiesMachine Learning in Bioinformatics

Cited by 50

Whole-genome prediction of bacterial pathogenic capacity on novel bacteria using protein language models with PathogenFinder2

Ferrer Florensa, A., Almagro Armenteros, J. J., Kaas, R. S., Clausen, P. T. L. C., Nielsen, H., Rost, B., & Aarestrup, F. M. (2026) · Bioinformatics

Genomics and Phylogenetic StudiesMachine Learning in Bioinformatics

Cited by 50

CATHe: detection of remote homologues for CATH superfamilies using embeddings from protein language models

Nallapareddy, V., Bordin, N., Sillitoe, I., Heinzinger, M., Littmann, M., Waman, V. P., Sen, N., Rost, B., & Orengo, C. (2023) · Bioinformatics

Machine Learning in BioinformaticsProtein Structure and Dynamics

Cited by 47

Expert-guided protein Language Models enable accurate and blazingly fast fitness prediction

Marquet, C., Schlensok, J., Abakarova, M., Rost, B., & Laine, E. (2024) · Bioinformatics

Genomics and Rare DiseasesMachine Learning in Bioinformatics

Cited by 33

Expert-guided protein language models enable accurate and blazingly fast fitness prediction

Marquet, C., Schlensok, J., Abakarova, M., Rost, B., & Laine, E. (2024) · Bioinformatics

Genomics and Rare DiseasesMachine Learning in Bioinformatics

Cited by 33

Protein Embeddings Predict Binding Residues in Disordered Regions

Jahn, L. R., Marquet, C., Heinzinger, M., & Rost, B. (2024) · Scientific Reports

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 28

LambdaPP: Fast and accessible protein-specific phenotype predictions

Olenyi, T., Marquet, C., Heinzinger, M., Kröger, B., Nikolova, T., Bernhofer, M., Sändig, P., Schütze, K., Littmann, M., Mirdita, M., et al. (2022) · Protein Science

Machine Learning in BioinformaticsProtein Structure and Dynamics

Cited by 18

Alignment-based Protein Mutational Landscape Prediction: Doing More with Less

Abakarova, M., Marquet, C., Rera, M., Rost, B., & Laine, E. (2023) · Genome Biology and Evolution

Genomics and Rare DiseasesGenomics and Phylogenetic Studies

Cited by 14

TMVisDB: Annotation and 3D-visualization of transmembrane proteins

Olenyi, T., Marquet, C., Grekova, A., Houri, L., Heinzinger, M., Dallago, C., & Rost, B. (2024) · Journal of Molecular Biology

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 4

TMVisDB: Annotation and 3D-visualization of Transmembrane Proteins

Olenyi, T., Marquet, C., Grekova, A., Houri, L., Heinzinger, M., Dallago, C., & Rost, B. (2025) · Journal of Molecular Biology

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 4

FlatProt: 2D visualization eases protein structure comparison

Olenyi, T., Carl, C., Senoner, T., Koludarov, I., & Rost, B. (2025) · BMC Bioinformatics

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 2

Structural analysis of genomic and proteomic signatures reveal dynamic expression of intrinsically disordered regions in breast cancer

Zatorski, N., Sun, Y., Elmas, A., Dallago, C., Karl, T., Stein, D., Rost, B., Huang, K.-L., Walsh, M., & Schlessinger, A. (2024) · iScience

Protein Structure and DynamicsGene expression and cancer classification

Cited by 2

Structural Analysis of Genomic and Proteomic Signatures Reveal Dynamic Expression of Intrinsically Disordered Regions in Breast Cancer and Tissue

Zatorski, N., Sun, Y., Elmas, A., Dallago, C., Karl, T., Stein, D., Rost, B., Huang, K.-L., Walsh, M., & Schlessinger, A. (2023) · iScience

Protein Structure and DynamicsGene expression and cancer classification

Cited by 2

Rendering protein mutation movies with MutAmore

Weissenow, K., & Rost, B. (2023) · BMC Bioinformatics

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 0