Sandberg, Rickard

Alternative isoform regulation in human tissue transcriptomes

Wang, E. T., Sandberg, R., Luo, S., Khrebtukova, I., Zhang, L., Mayr, C., Kingsmore, S. F., Schroth, G. P., & Burge, C. B. (2008) · Nature

RNA Research and SplicingRNA regulation and disease

Cited by 5,181

Full-length RNA-seq from single cells using Smart-seq2

Picelli, S., Faridani, O. R., Björklund, Å. K., Winberg, G., Sagasser, S., & Sandberg, R. (2014) · Nature Protocols

Single-cell and spatial transcriptomicsGenomics and Phylogenetic Studies

Cited by 4,137

Smart-seq2 for sensitive full-length transcriptome profiling in single cells

Picelli, S., Björklund, Å. K., Faridani, O. R., Sagasser, S., Winberg, G., & Sandberg, R. (2013) · Nature Methods

Single-cell and spatial transcriptomicsGenomics and Phylogenetic Studies

Cited by 2,358

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

Ramsköld, D., Luo, S., Wang, Y.-C., Li, R., Deng, Q., Faridani, O. R., Daniels, G. A., Khrebtukova, I., Loring, J. F., Laurent, L. C., et al. (2012) · Nature Biotechnology

Single-cell and spatial transcriptomicsGenomics and Phylogenetic Studies

Cited by 1,609

Single-Cell Transcriptome Profiling of Human Pancreatic Islets in Health and Type 2 Diabetes

Segerstolpe, Å., Palasantza, A., Eliasson, P., Andersson, E.-M., Andréasson, A.-C., Sun, X., Picelli, S., Sabirsh, A., Clausen, M., Bjursell, M. K., et al. (2016) · Cell Metabolism

Pancreatic function and diabetesSingle-cell and spatial transcriptomics

Cited by 1,550

Proliferating Cells Express mRNAs with Shortened 3' Untranslated Regions and Fewer MicroRNA Target Sites

Sandberg, R., Neilson, J. R., Sarma, A., Sharp, P. A., & Burge, C. B. (2008) · Science

RNA Research and SplicingRNA and protein synthesis mechanisms

Cited by 1,349

Single-Cell RNA-Seq Reveals Dynamic, Random Monoallelic Gene Expression in Mammalian Cells

Deng, Q., Ramsköld, D., Reinius, B., & Sandberg, R. (2014) · Science

Genetic Syndromes and ImprintingGenomics and Chromatin Dynamics

Cited by 1,345

Single-Cell RNA-Seq Reveals Lineage and X Chromosome Dynamics in Human Preimplantation Embryos

Petropoulos, S., Edsgärd, D., Reinius, B., Deng, Q., Panula, S. P., Codeluppi, S., Plaza Reyes, A., Linnarsson, S., Sandberg, R., & Lanner, F. (2016) · Cell

Developmental Biology and Gene RegulationSingle-cell and spatial transcriptomics

Cited by 1,063

CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing

Shukla, S., Kavak, E., Gregory, M., Imashimizu, M., Shutinoski, B., Kashlev, M., Oberdoerffer, P., Sandberg, R., & Oberdoerffer, S. (2011) · Nature

RNA Research and SplicingGenomics and Chromatin Dynamics

Cited by 973

Notch signaling: simplicity in design, versatility in function

Andersson, E. R., Sandberg, R., & Lendahl, U. (2011) · Development

Developmental Biology and Gene RegulationWnt/β-catenin signaling in development and cancer

Cited by 950

An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data

Ramsköld, D., Wang, E. T., Burge, C. B., & Sandberg, R. (2009) · PLoS Computational Biology

Genomics and Phylogenetic StudiesGene expression and cancer classification

Cited by 820

Single-cell RNA counting at allele and isoform resolution using Smart-seq3

Hagemann-Jensen, M., Ziegenhain, C., Chen, P., Ramsköld, D., Hendriks, G.-J., Larsson, A. J. M., Faridani, O. R., & Sandberg, R. (2020) · Nature Biotechnology

Single-cell and spatial transcriptomicsGenomics and Phylogenetic Studies

Cited by 700

Gene expression perturbation in vitro—A growing case for three-dimensional (3D) culture systems

Birgersdotter, A., Sandberg, R., & Ernberg, I. (2005) · Seminars in Cancer Biology

Gene expression and cancer classificationCancer Cells and Metastasis

Cited by 591

Electrophysiological, transcriptomic and morphologic profiling of single neurons using Patch-seq

Cadwell, C. R., Palasantza, A., Jiang, X., Berens, P., Deng, Q., Yilmaz, M., Reimer, J., Shen, S., Bethge, M., Tolias, K. F., et al. (2016) · Nature Biotechnology

Single-cell and spatial transcriptomicsNeuroscience and Neuropharmacology Research

Cited by 581

Genomic encoding of transcriptional burst kinetics

Larsson, A. J. M., Johnsson, P., Hagemann-Jensen, M., Hartmanis, L., Faridani, O. R., Reinius, B., Segerstolpe, Å., Rivera, C. M., Ren, B., & Sandberg, R. (2019) · Nature

Genomics and Chromatin DynamicsGene Regulatory Network Analysis

Cited by 534

A multimodal cell census and atlas of the mammalian primary motor cortex

BRAIN Initiative Cell Census Network (BICCN), BRAIN Initiative Cell Census Network (BICCN) Corresponding authors, Callaway, E. M., Dong, H.-W., Ecker, J. R., Hawrylycz, M. J., Huang, Z. J., Lein, E. S., Ngai, J., Osten, P., et al. (2021) · Nature

Single-cell and spatial transcriptomicsGenomics and Chromatin Dynamics

Cited by 522

Benchmarking single-cell RNA-sequencing protocols for cell atlas projects

Mereu, E., Lafzi, A., Moutinho, C., Ziegenhain, C., McCarthy, D. J., Álvarez-Varela, A., Batlle, E., Sagar, Grün, D., Lau, J. K., et al. (2020) · Nature Biotechnology

Single-cell and spatial transcriptomicsGenomics and Phylogenetic Studies

Cited by 499

Single-cell transcriptomics uncovers distinct molecular signatures of stem cells in chronic myeloid leukemia

Giustacchini, A., Thongjuea, S., Barkas, N., Woll, P. S., Povinelli, B. J., Booth, C. A. G., Sopp, P., Norfo, R., Rodriguez-Meira, A., Ashley, N., et al. (2017) · Nature Medicine

Chronic Myeloid Leukemia TreatmentsSingle-cell and spatial transcriptomics

Cited by 403

Phenotypic variation of transcriptomic cell types in mouse motor cortex

Scala, F., Kobak, D., Bernabucci, M., Bernaerts, Y., Cadwell, C. R., Castro, J. R., Hartmanis, L., Jiang, X., Laturnus, S., Miranda, E., et al. (2021) · Nature

Single-cell and spatial transcriptomicsNeuroscience and Neuropharmacology Research

Cited by 398

Single-cell sequencing of the small-RNA transcriptome

Faridani, O. R., Abdullayev, I., Hagemann-Jensen, M., Schell, J. P., Lanner, F., & Sandberg, R. (2016) · Nature Biotechnology

Single-cell and spatial transcriptomicsMicroRNA in disease regulation

Cited by 212

Layer 4 of mouse neocortex differs in cell types and circuit organization between sensory areas

Scala, F., Kobak, D., Shan, S., Bernaerts, Y., Laturnus, S., Cadwell, C. R., Hartmanis, L., Froudarakis, E., Castro, J. R., Tan, Z. H., et al. (2019) · Nature Communications

Neuroscience and Neuropharmacology ResearchNeural dynamics and brain function

Cited by 193

Single-cell analysis reveals a close relationship between differentiating dopamine and subthalamic nucleus neuronal lineages

Kee, N., Volakakis, N., Kirkeby, A., Dahl, L., Storvall, H., Nolbrant, S., Lahti, L., Björklund, Å. K., Gillberg, L., Joodmardi, E., et al. (2017) · Cell stem cell

Pluripotent Stem Cells ResearchNeurogenesis and neuroplasticity mechanisms

Cited by 149

Analysis of allelic expression patterns in clonal somatic cells by single-cell RNA–seq

Reinius, B., Mold, J. E., Ramsköld, D., Deng, Q., Johnsson, P., Michaëlsson, J., Frisén, J., & Sandberg, R. (2016) · Nature Genetics

Genetic Syndromes and ImprintingSingle-cell and spatial transcriptomics

Cited by 149

Multimodal profiling of single-cell morphology, electrophysiology, and gene expression using Patch-seq

Cadwell, C. R., Scala, F., Li, S., Livrizzi, G., Shen, S., Sandberg, R., Jiang, X., & Tolias, A. S. (2017) · Nature Protocols

Single-cell and spatial transcriptomicsNeuroscience and Neuropharmacology Research

Cited by 147