Metcalf, Jessica L.

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Bolyen, E., Rideout, J. R., Dillon, M. R., Bokulich, N. A., Abnet, C. C., Al-Ghalith, G. A., Alexander, H., Alm, E. J., Arumugam, M., Asnicar, F., et al. (2019) · Nature Biotechnology

Scientific Computing and Data ManagementGut microbiota and health

Cited by 23,742

A communal catalogue reveals Earth's multiscale microbial diversity

Thompson, L. R., Sanders, J. G., McDonald, D., Amir, A., Ladau, J., Locey, K. J., Prill, R. J., Tripathi, A., Gibbons, S. M., Ackermann, G., et al. (2017) · Nature

Microbial Community Ecology and PhysiologyGenomics and Phylogenetic Studies

Cited by 2,684

Defining the human microbiome

Ursell, L. K., Metcalf, J. L., Parfrey, L. W., & Knight, R. (2012) · Nutrition Reviews

Gut microbiota and healthMicrobial Community Ecology and Physiology

Cited by 1,255

RETRACTED ARTICLE: Microbiome analyses of blood and tissues suggest cancer diagnostic approach

Poore, G. D., Kopylova, E., Zhu, Q., Carpenter, C., Fraraccio, S., Wandro, S., Kosciolek, T., Janssen, S., Metcalf, J., Song, S. J., et al. (2020) · Nature

Cancer Genomics and DiagnosticsGut microbiota and health

Cited by 989

American Gut: an Open Platform for Citizen-Science Microbiome Research

McDonalda, D., Hyde, E., Debelius, J. W., Morton, J. T., Gonzalez, A., Ackermann, G., Aksenov, A. A., Behsaz, B., Brennan, C., Chen, Y., et al. (2018) · mSystems

Gut microbiota and healthResearch Data Management Practices

Cited by 878

The microbiome of uncontacted Amerindians

Clemente, J. C., Pehrsson, E. C., Blaser, M. J., Sandhu, K., Gao, Z., Wang, B., Magris, M., Hidalgo, G., Contreras, M., Noya-Alarcón, Ó., et al. (2015) · Science Advances

Gut microbiota and healthAntibiotic Resistance in Bacteria

Cited by 851

Subsistence strategies in traditional societies distinguish gut microbiomes

Obregon-Tito, A. J., Tito, R. Y., Metcalf, J., Sankaranarayanan, K., Clemente, J. C., Ursell, L. K., Zech Xu, Z., Van Treuren, W., Knight, R., Gaffney, P. M., et al. (2015) · Nature Communications

Gut microbiota and healthOral microbiology and periodontitis research

Cited by 587

Microbiota succession throughout life from the cradle to the grave

Martino, C., Dilmore, A. H., Burcham, Z. M., Metcalf, J. L., Jeste, D., & Knight, R. (2022) · Nature Reviews Microbiology

Gut microbiota and healthMicrobial Community Ecology and Physiology

Cited by 275

Balance Trees Reveal Microbial Niche Differentiation

Morton, J. T., Sanders, J., Quinn, R. A., McDonald, D., Gonzalez, A., Vázquez-Baeza, Y., Navas-Molina, J. A., Song, S. J., Metcalf, J. L., Hyde, E. R., et al. (2017) · mSystems

Microbial Community Ecology and PhysiologyGenomics and Phylogenetic Studies

Cited by 254

Patterns of Oral Microbiota Diversity in Adults and Children: A Crowdsourced Population Study

Burcham, Z. M., Garneau, N. L., Comstock, S. S., Tucker, R. M., Knight, R., Metcalf, J. L., Scientists, G. O. T. L. C., Miranda, A., Reinhart, B., Meyers, D., et al. (2020) · Scientific Reports

Oral microbiology and periodontitis researchGut microbiota and health

Cited by 183