Khakzad, Hamed

Macromolecular modeling and design in Rosetta: recent methods and frameworks

Leman, J. K., Weitzner, B. D., Lewis, S. M., Adolf-Bryfogle, J., Alam, N., Alford, R. F., Aprahamian, M., Baker, D., Barlow, K. A., Barth, P., et al. (2020) · Nature Methods

Protein Structure and DynamicsComputational Drug Discovery Methods

Cited by 888

De novo protein design by inversion of the AlphaFold structure prediction network

Goverde, C., Wolf, B., Khakzad, H., Rosset, S., & Correia, B. E. (2022) · Protein Science

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 103

De novo protein design by inversion of the AlphaFold structure prediction network

Goverde, C. A., Wolf, B., Khakzad, H., Rosset, S., & Correia, B. E. (2023) · Protein Science

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 103

Multienzyme deep learning models improve peptide de novo sequencing by mass spectrometry proteomics

Gueto-Tettay, C., Tang, D., Happonen, L., Heusel, M., Khakzad, H., Malmström, J., & Malmström, L. (2023) · PLOS Computational Biology

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 12

Multienzyme deep learning models improve peptide de novo sequencing by mass spectrometry proteomics

Gueto-Tettay, C., Tang, D., Happonen, L., Heusel, M., Khakzad, H., Malmström, J., & Malmström, L. (2022) · PLoS Computational Biology

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 12

Mapping targetable sites on the human surfaceome for the design of novel binders

Balbi, P. E. M., Sadek, A., Marchand, A., Yu, T.-Y., Damjanovic, J., Georgeon, S., Schmidt, J., Fulle, S., Yang, C., Khakzad, H., et al. (2024) · Proceedings of the National Academy of Sciences

Protein Structure and DynamicsChemical Synthesis and Analysis

Cited by 6

Mapping targetable sites on the human surfaceome for the design of novel binders

Balbi, P. E. M., Sadek, A., Marchand, A., Yu, T.-Y., Damjanovic, J., Georgeon, S., Schmidt, J., Fulle, S., Yang, C., Khakzad, H., et al. (2026) · Proceedings of the National Academy of Sciences

Protein Structure and DynamicsChemical Synthesis and Analysis

Cited by 6