Tomer, Raju

Advanced CLARITY for rapid and high-resolution imaging of intact tissues

Tomer, R., Ye, L., Hsueh, B., & Deisseroth, K. (2014) · Nature Protocols

Advanced Fluorescence Microscopy TechniquesCell Image Analysis Techniques

Cited by 842

Intact-brain analyses reveal distinct information carried by SNc dopamine subcircuits

Lerner, T. N., Shilyansky, C., Davidson, T. J., Evans, K. E., Beier, K. T., Zalocusky, K. A., Crow, A. K., Malenka, R. C., Luo, L., Tomer, R., et al. (2015) · Cell

Neurotransmitter Receptor Influence on BehaviorNeuroscience and Neuropharmacology Research

Cited by 794

Molecular interrogation of hypothalamic organization reveals distinct dopamine neuronal subtypes

Romanov, R. A., Zeisel, A., Bakker, J., Girach, F., Hellysaz, A., Tomer, R., Alpár, A., Mulder, J., Clotman, F., Keimpema, E., et al. (2017) · Nature Neuroscience

Single-cell and spatial transcriptomicsCircadian rhythm and melatonin

Cited by 502

Profiling by image registration reveals common origin of annelid mushroom bodies and vertebrate pallium.

Tomer, R., Denes, A. S., Tessmar-Raible, K., & Arendt, D. (2010) · Cell

Neurobiology and Insect Physiology ResearchDevelopmental Biology and Gene Regulation

Cited by 317

An interactive framework for whole-brain maps at cellular resolution

Fürth, D., Vaissière, T., Tzortzi, O., Xuan, Y., Märtin, A., Lazaridis, I., Spigolon, G., Fisone, G., Tomer, R., Deisseroth, K., et al. (2018) · Nature Neuroscience

Cell Image Analysis TechniquesSingle-cell and spatial transcriptomics

Cited by 215

Development of the annelid axochord: Insights into notochord evolution

Lauri, A., Brunet, T., Handberg-Thorsager, M., Fischer, A. H. L., Simakov, O., Steinmetz, P. R. H., Tomer, R., Keller, P. J., & Arendt, D. (2014) · Science

Developmental Biology and Gene RegulationMarine Invertebrate Physiology and Ecology

Cited by 104

Squidiff: predicting cellular development and responses to perturbations using a diffusion model

He, S., Zhu, Y., Tavakol, D. N., Ye, H., Lao, Y.-H., Zhu, Z., Xu, C., Chauhan, S., Garty, G., Tomer, R., et al. (2026) · Nature Methods

Single-cell and spatial transcriptomicsGene Regulatory Network Analysis

Cited by 38

Identifying Cell Types from Spatially Referenced Single-Cell Expression Datasets

Pettit, J.-B., Tomer, R., Achim, K., Richardson, S., Azizi, L., & Marioni, J. (2014) · PLoS Computational Biology

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 23