Tauriello, Gerardo

Embedding-based alignment: combining protein language models with dynamic programming alignment to detect structural similarities in the twilight-zone

Pantolini, L., Studer, G., Pereira, J., Durairaj, J., Tauriello, G., & Schwede, T. (2024) · Bioinformatics

Machine Learning in BioinformaticsGenomics and Phylogenetic Studies

Cited by 55

3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources

Varadi, M., Nair, S., Sillitoe, I., Tauriello, G., Anyango, S., Bienert, S., Borges, C., Deshpande, M., Green, T., Hassabis, D., et al. (2022) · GigaScience

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 32

ModelCIF: An Extension of PDBx/mmCIF Data Representation for Computed Structure Models

Vallat, B., Tauriello, G., Bienert, S., Haas, J., Webb, B. M., Žídek, A., Zheng, W., Peisach, E., Piehl, D. W., Anischanka, I., et al. (2023) · Journal of Molecular Biology

Enzyme Structure and FunctionProtein Structure and Dynamics

Cited by 26

Evaluating generalization in protein–ligand cofolding methods

Škrinjar, P., Eberhardt, J., Studer, G., Tauriello, G., Schwede, T., & Durairaj, J. (2026) · Nature Structural & Molecular Biology

Protein Structure and DynamicsComputational Drug Discovery Methods

Cited by 22

AlphaPulldown2—a general pipeline for high-throughput structural modeling

Molodenskiy, D., Maurer, V. J., Yu, D., Chojnowski, G., Bienert, S., Tauriello, G., Gilep, K., Schwede, T., & Kosinski, J. (2025) · Bioinformatics

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 15

A fully automated benchmarking suite to compare macromolecular complexes

Studer, G., Robin, X., Bienert, S., Durairaj, J., Škrinjar, P., Tauriello, G., Waterhouse, A. M., & Schwede, T. (2026) · Nature Methods

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 10

3D-Beacons: Decreasing the gap between protein sequences and structures through a federated network of protein structure data resources

Varadi, M., Nair, S., Sillitoe, I., Tauriello, G., Anyango, S., Bienert, S., Borges, C., Deshpande, M., Green, T., Hassabis, D., et al. (2022) · bioRxiv (Cold Spring Harbor Laboratory)

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 2

AlphaPulldown2 – A General Pipeline for High-Throughput Structural Modeling

Molodenskiy, D., Maurer, V. J., Yu, D., Chojnowski, G., Bienert, S., Tauriello, G., Gilep, K., Schwede, T., & Kosinski, J. (2024) · bioRxiv (Cold Spring Harbor Laboratory)

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 0