Chemical primer extension: efficiently determining single nucleotides in DNA
Abstract
Rapid replication: Non-enzymatic primer extension has previously been studied in the context of prebiotic chemistry, but not for practical applications. Reactions with primers featuring a 3′-amino-2′,3′-dideoxynucleotide can be rapid and selective for all four templating nucleobases (see scheme). On a chip with immobilized capture strands, 500 fmol of template suffice for single-nucleotide determinations within 2.7 h.
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Richert and co-workers recognized the potential of enzyme-free primer extension for genotyping and sequencing with reversible termination.
“In addition, Richert and co-workers also recognized the potential of enzyme-free primer extension for genotyping15 and sequencing with reversible termination.16,17”
From Sequencing of <scp>d</scp>/<scp>l</scp>-DNA and XNA by Templated-Synthesis (2025) · cites this paper as [15]
Imidazolides as monomers and RNA as template produced faster reaction rates than oxyazabenzotriazolides on DNA templates.
“Interestingly, imidazolides as nucleotide monomers and RNA as template gave faster reaction rates than oxyazabenzotriazolides reacting on DNA templates, a system previously described as particularly fast-reacting.24”
From Cascade of reduced speed and accuracy after errors in enzyme-free copying of nucleic acid sequences (2013) · cites this paper as [24]
Mutation rates during early life with primitive replication mechanisms would have been quite high and would substantially limit the information content of the system.
“The constraint on information is also a serious consideration for the early stages of life that were characterized by primitive replication mechanisms; mutation rates would have been quite high and would substantially limit the information content of the system (17–19).”
From The prebiotic evolutionary advantage of transferring genetic information from RNA to DNA (2011) · cites this paper as [19]
Cites
DNA sequencing with chain-terminating inhibitors
Sanger, F., Nicklen, S., & Coulson, A. R. (1977) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.74.12.5463 · Cited by 68,572 · see citing works
Epigenetics in human disease and prospects for epigenetic therapy
Egger, G., Liang, G., Aparicio, A., & Jones, P. A. (2004) · Nature · doi:10.1038/nature02625 · Cited by 3,232 · see citing works
1-Hydroxy-7-azabenzotriazole. An efficient peptide coupling additive
Carpino, L. A. (1993) · Journal of the American Chemical Society · doi:10.1021/ja00063a082 · Cited by 1,494 · see citing works
Prebiotic chemistry and the origin of the RNA world.
Leslie E., O. (2004) · Critical Reviews in Biochemistry and Molecular Biology · doi:10.1080/10409230490460765 · Cited by 1,124 · see citing works
Chip-based genotyping by mass spectrometry.
Tang, K., Fu, D.-J., Julien, D., Braun, A., Cantor, C., & Köster, H. (1999) · Proceedings of the National Academy of Sciences of the United States of America · doi:10.1073/pnas.96.18.10016 · Cited by 263 · see citing works
Prebiotic chemistry and nucleic acid replication
Orgel, L. E., & Lohrmann, R. (1974) · Accounts of Chemical Research · doi:10.1021/ar50083a002 · Cited by 247 · see citing works
Surface-promoted replication and exponential amplification of DNA analogues
Luther, A., Brandsch, R., & von Kiedrowski, G. (1998) · Nature · doi:10.1038/24343 · Cited by 246 · see citing works
Nonenzymatic synthesis of oligoadenylates on a polyuridylic acid template.
Sulston, J., Lohrmann, R., Orgel, L. E., & Miles, H. T. (1968) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.59.3.726 · Cited by 149 · see citing works
Genotyping single nucleotide polymorphisms by mass spectrometry
Tost, J., & Gut, I. G. (2002) · Mass Spectrometry Reviews · doi:10.1002/mas.1009 · Cited by 125 · see citing works
Substituent control of the poly(C)-directed oligomerization of guanosine 5'-phosphoroimidazolide
Inoue, T., & Orgel, L. E. (1981) · Journal of the American Chemical Society · doi:10.1021/ja00415a051 · Cited by 120 · see citing works
Synthesis of 35–40 mers of RNA oligomers from unblocked monomers. A simple approach to the RNA world
Huang, W., & Ferris, J. P. (2003) · Chem. Commun. · doi:10.1039/b303134a · Cited by 110 · see citing works
Nonenzymic template-directed synthesis on oligodeoxycytidylate sequences in hairpin oligonucleotides
Wu, T., & Orgel, L. E. (1992) · Journal of the American Chemical Society · doi:10.1021/ja00027a040 · Cited by 106 · see citing works
Wu, T., & Orgel, L. E. (1992) · Journal of the American Chemical Society · doi:10.1021/ja00047a001 · Cited by 103 · see citing works
Grunau, C. (2000) · Human Molecular Genetics · doi:10.1093/hmg/9.18.2651 · Cited by 90 · see citing works
The Polymerase Chain Reaction (Nobel Lecture)
Mullis, K. B. (1994) · Angewandte Chemie International Edition in English · doi:10.1002/anie.199412091 · Cited by 82 · see citing works
Quantitative MALDI-TOF MS of oligonucleotides and a nuclease assay
Sarracino, D., & Richert, C. (1996) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/0960-894x(96)00465-9 · Cited by 72 · see citing works
Self-citationPrabahar, K. J., & Ferris, J. P. (1997) · Journal of the American Chemical Society · doi:10.1021/ja9700764 · Cited by 72 · see citing works
Enzymatic Behavior by Intercalating Molecules in a Template‐Directed Ligation Reaction
Jain, S. S., Anet, F. A. L., Stahle, C. J., & Hud, N. V. (2004) · Angewandte Chemie International Edition · doi:10.1002/anie.200353155 · Cited by 60 · see citing works
Prabahar, K. J., Cole, T. D., & Ferris, J. P. (1994) · Journal of the American Chemical Society · doi:10.1021/ja00103a006 · Cited by 58 · see citing works
Rojas Stütz, J. A., & Richert, C. (2001) · Journal of the American Chemical Society · doi:10.1021/ja011448i · Cited by 30 · see citing works
Self-citationDie Polymerase‐Kettenreaktion (Nobel‐Vortrag)
Mullis, K. B. (1994) · Angewandte Chemie · doi:10.1002/ange.19941061204 · Cited by 28 · see citing works
Plutowski, U., & Richert, C. (2004) · Angewandte Chemie International Edition · doi:10.1002/anie.200461212 · Cited by 27 · see citing works
Self-citationNonenzymatic Oligomerization of Ribonucleotides: Towards in vitro Selection Experiments
Hey, M., Hartel, C., & Göbel, M. (2003) · Helvetica Chimica Acta · doi:10.1002/hlca.200390084 · Cited by 24 · see citing works
Plutowski, U., & Richert, C. (2004) · Angewandte Chemie · doi:10.1002/ange.200461212 · Cited by 18 · see citing works
Self-citationKanavarioti, A., Stronach, M. W., Ketner, R. J., & Hurley, T. B. (1995) · The Journal of Organic Chemistry · doi:10.1021/jo00108a027 · Cited by 17 · see citing works
Enzymatic Behavior by Intercalating Molecules in a Template‐Directed Ligation Reaction
Jain, S. S., Anet, F. A. L., Stahle, C. J., & Hud, N. V. (2004) · Angewandte Chemie · doi:10.1002/ange.200353155 · Cited by 10 · see citing works
Acceleration of the template-directed reactions of nucleoside 5′-phosphorimidazolides by acylation
Rodriguez, L., & Orgel, L. E. (1991) · Journal of Molecular Evolution · doi:10.1007/bf02102184 · Cited by 4 · see citing works
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Template-directed synthesis of a genetic polymer in a model protocell
Mansy, S. S., Schrum, J. P., Krishnamurthy, M., Tobé, S., Treco, D. A., & Szostak, J. W. (2008) · Nature · doi:10.1038/nature07018 · Cited by 684 · see citing works
Origins of building blocks of life: A review
Kitadai, N., & Maruyama, S. (2018) · Geoscience Frontiers · doi:10.1016/j.gsf.2017.07.007 · Cited by 464 · see citing works
Prywes, N., Blain, J. C., Del Frate, F., & Szostak, J. W. (2016) · eLife · doi:10.7554/elife.17756 · Cited by 141 · see citing works
Rajamani, S., Ichida, J. K., Antal, T., Treco, D. A., Leu, K., Nowak, M. A., Szostak, J. W., & Chen, I. A. (2010) · Journal of the American Chemical Society · doi:10.1021/ja100780p · Cited by 118 · see citing works
Schrum, J. P., Ricardo, A., Krishnamurthy, M., Blain, J. C., & Szostak, J. W. (2009) · Journal of the American Chemical Society · doi:10.1021/ja906557v · Cited by 103 · see citing works
The prebiotic evolutionary advantage of transferring genetic information from RNA to DNA
Leu, K., Obermayer, B., Rajamani, S., Gerland, U., & Chen, I. A. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkr525 · Cited by 85 · see citing works
Cascade of reduced speed and accuracy after errors in enzyme-free copying of nucleic acid sequences
Leu, K., Kervio, E., Obermayer, B., Turk-MacLeod, R. M., Yuan, C., Luevano, J.-M., Chen, E., Gerland, U., Richert, C., & Chen, I. A. (2013) · Journal of the American Chemical Society · doi:10.1021/ja3095558 · Cited by 78 · see citing works
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Kervio, E., Hochgesand, A., Steiner, U. E., & Richert, C. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0914872107 · Cited by 62 · see citing works
Self-citationEnzyme-free genetic copying of DNA and RNA sequences
Sosson, M., & Richert, C. (2018) · Beilstein Journal of Organic Chemistry · doi:10.3762/bjoc.14.47 · Cited by 33 · see citing works
Self-citationChemical primer extension: Individual steps of spontaneous replication
Stütz, J. A. R., Kervio, E., Deck, C., & Richert, C. (2007) · Chemistry & Biodiversity · doi:10.1002/cbdv.200790064 · Cited by 30 · see citing works
Self-citationAdenosine residues in the template do not block spontaneous replication steps of RNA
Vogel, S. R., & Richert, C. (2007) · Chemical Communications · doi:10.1039/b702768k · Cited by 28 · see citing works
Self-citationRojas Stütz, J. A., & Richert, C. (2006) · Chemistry – A European Journal · doi:10.1002/chem.200501008 · Cited by 9 · see citing works
Self-citationSequencing of <scp>d</scp>/<scp>l</scp>-DNA and XNA by Templated-Synthesis
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- Authors
- Hagenbuch, P., Kervio, E., Hochgesand, A., Plutowski, U., & Richert, C.
- Affiliations
- Karlsruhe Institute of Technology (DE)
- Venue
- Angewandte Chemie International Edition
- Publisher
- Wiley
- Published
- 2005-10-07
- Volume
- 44
- Issue
- 40
- Pages
- 6588-6592
- ISSN
- 1433-7851 (ISSN-L)
- 1521-3773
- OpenAlex
- W2144506606
- Cited by
- 74
- References
- 27
- Citations by year
- 2026: 1 · 2025: 2 · 2023: 1 · 2021: 3 · 2020: 2 · 2019: 4 · 2018: 5 · 2017: 5 · 2016: 4 · 2015: 6 · 2014: 4 · 2013: 2 · 2012: 8
- FWCI
- 2.01
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Angewandte Chemie International Edition (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Advanced biosensing and bioanalysis techniques
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA and Nucleic Acid Chemistry
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA and Biological Computing
- Keywords
- primer extension, DNA templating, microfluidics, prebiotic chemistry, nucleotide sequencing
- MeSH terms
- Base Sequence, DNA, Molecular Sequence Data, Nucleotides, Time Factors, DNA Primers, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Oligonucleotide Array Sequence Analysis, Nucleic Acid Amplification Techniques
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