Data, disease and diplomacy: GISAID's innovative contribution to global health
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- The Rise and Fall of SARS-CoV-2 Variants and Ongoing Diversification of OmicronTanner Wiegand, Artem A. Nemudryi, Anna Nemudraia, Aidan McVey, Agusta Little, David N. Taylor, Seth T. Walk, Blake Wiedenheft · 2022 · Viruses
- The emergence and ongoing convergent evolution of the N501Y lineages coincides with a major global shift in the SARS-CoV-2 selective landscapeDarren P Martin, Steven Weaver, Houryiah Tegally, Emmanuel James San, Stephen D. Shank, Eduan Wilkinson, Alexander G. Lucaci, Jennifer Giandhari, Sureshnee Naidoo, Yeshnee Pillay et al. · 2021 · PubMed
- SARS-CoV-2 evolution during prolonged infection in immunocompromised patientsAndrew D. Marques, Jevon Graham-Wooten, Ayannah S. Fitzgerald, Ashley Sobel Leonard, Emma J. Cook, J.K. Everett, Kyle G. Rodino, Louise H. Moncla, Brendan J. Kelly, Ronald G. Collman et al. · 2024 · mBio
- A review on viral data sources and search systems for perspective mitigation of COVID-19Anna Bernasconi, Arif Canakoglu, Marco Masseroli, Pietro Pinoli, Stefano Ceri · 2020 · Briefings in Bioinformatics
- Evolutionary analysis and lineage designation of SARS-CoV-2 genomesXiaolu Tang, Ruochen Ying, Xinmin Yao, Guanghao Li, Changcheng Wu, Yiyuli Tang, Zhida Li, Bishan Kuang, Feng Ying Wu, Changsheng Chi et al. · 2021 · 中国科学通报:英文版
- Use of Genomics to Track Coronavirus Disease Outbreaks, New ZealandJemma L. Geoghegan, Jordan Douglas, Xiaoyun Ren, Matthew Storey, James Hadfield, Olin Silander, Nikki E. Freed, Lauren Jelley, Sarah Jefferies, Jillian Sherwood et al. · 2021 · Emerging infectious diseases
- Increase of SARS-CoV-2 RNA load in faecal samples prompts for rethinking of SARS-CoV-2 biology and COVID-19 epidemiologyMauro Petrillo, Carlo Brogna, Simone Cristoni, Maddalena Querci, Ornella Piazza, Guy Van den Eede · 2021 · F1000Research
- Emerging mutations in envelope protein of SARS-CoV-2 and their effect on thermodynamic propertiesKejie Mou, Mohnad Abdalla, Dong Qing Wei, Muhammad Tahir Khan, Madeeha Shahzad Lodhi, Doaa Bahaa Eldin Darwish, Mohamed Sharaf, Xudong Tu · 2021 · Informatics in Medicine Unlocked
- HD5 and LL-37 Inhibit SARS-CoV and SARS-CoV-2 Binding to Human ACE2 by Molecular SimulationDaixi Li, Peiqin Chen, Ting Shi, Aamir Mehmood, Jingfei Qiu · 2021 · Interdisciplinary Sciences Computational Life Sciences
- VLP-Based COVID-19 Vaccines: An Adaptable Technology against the Threat of New VariantsWasim Aluísio Prates-Syed, Lorena C. S. Chaves, Karin P. Crema, Larissa Vuitika, Aline Aparecida de Lima Lira, Nelson Côrtes, Victor Kersten, Francisco Eduardo Gontijo Guimarães, Mohammad Sadraeian, Fernando Luís Barroso da Silva et al. · 2021 · Vaccines
- Initial analysis of viral dynamics and circulating viral variants during the mRNA-1273 Phase 3 COVE trialRolando Pajón, Yamuna Devi Paila, Bethany Girard, Groves Dixon, Katherine A. Kacena, Lindsey Robert Baden, Hana M. El Sahly, Brandon J. Essink, Kathleen M. Mullane, Ian Frank et al. · 2022 · Nature Medicine
- Rapid evolution of SARS-CoV-2 challenges human defensesCarlos Manuel Duarte, David I. Ketcheson, Victor M. Eguı́luz, Susana Agustı́, Juan Fernández-Gracia, Tahira Jamil, Elisa Laiolo, Takashi Gojobori, Intikhab S. Alam · 2022 · Scientific Reports
- Reverse-zoonotic transmission of SARS-CoV-2 lineage alpha (B.1.1.7) to great apes and exotic felids in a zoo in the Czech RepublicAlexander Nagy, Martina Stará, Roman Vodička, Lenka Černíková, Helena Jiřincová, Vlastimil Křivda, Kamil Sedlák · 2022 · Archives of Virology
- Mutations in SARS-CoV-2 are on the increase against the acquired immunityTomokazu Konishi · 2022 · PLoS ONE
- Influenza A(H5N1) detection in two asymptomatic poultry farm workers in Spain, September to October 2022: suspected environmental contaminationEsteban Aznar, Inmaculada Casas, Alejandro González Praetorius, María José Ruano Ramos, Francisco Pozo, María José Sierra Moros, María Victoria García Rivera, Azucena Sánchez Sánchez, Elena García-Villacieros, Gabriela Saravia et al. · 2023 · Eurosurveillance
- SARS-CoV-2 is well adapted for humans. What does this mean for re-emergence?Shing H. Zhan, Benjamin E. Deverman, Yujia A. Chan · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- Biothermodynamics of Viruses from Absolute Zero (1950) to Virothermodynamics (2022)Marko E. Popovic · 2022 · Vaccines
- Quantifying within-host diversity of H5N1 influenza viruses in humans and poultry in CambodiaLouise H. Moncla, Trevor Bedford, Philippe Dussart, Srey Viseth Horm, Sareth Rith, Philippe Buchy, Erik A. Karlsson, Lifeng Li, Yongmei Liu, Huachen Zhu et al. · 2020 · PLoS Pathogens
- Prediction and Evolution of the Molecular Fitness of SARS-CoV-2 Variants: Introducing SpikeProFabrizio Pucci, Marianne J. Rooman · 2021 · Viruses
- Variants in SARS-CoV-2 associated with mild or severe outcomeJameson D. Voss, Martin Skarzynski, Erin M. McAuley, Ezekiel J. Maier, Thomas F. Gibbons, Anthony C Fries, Richard R. Chapleau · 2021 · Evolution Medicine and Public Health
- The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutationTiziana Ginex, Clara Marco‐Marín, Miłosz Wieczór, Carlos P. Mata, James Krieger, Paula Ruiz-Rodríguez, Maria Lopez-Redondo, Clara Francés‐Gómez, Roberto Melero, Carlos Óscar S. Sorzano et al. · 2022 · PLoS Pathogens
- Evolution of ACE2-independent SARS-CoV-2 infection and mouse adaption after passage in cells expressing human and mouse ACE2Kexin Yan, Troy D. Dumenil, Bing Tang, Thuy T. Le, Cameron Bishop, Andreas Suhrbier, Daniel J. Rawle · 2022 · Virus Evolution
- Molecular Basis of Mink ACE2 Binding to SARS-CoV-2 and Its Mink-Derived VariantsChao Su, Juanhua He, Pengcheng Han, Bin Bai, Dedong Li, Jian Xin Cao, Mingxiong Tian, Yu Hu, Anqi Zheng, Sheng Niu et al. · 2022 · Journal of Virology
- SARS-CoV-2 variants: Impact on biological and clinical outcomeShakuntala Mahilkar, Sachee R Agrawal, Sakshi Chaudhary, Swapneil Parikh, Subash Chandra Sonkar, Dileep Kumar Verma, Vidushi Chitalia, Divya Mehta, Bidhan Chandra Koner, Neetu Vijay et al. · 2022 · Frontiers in Medicine
- Early Genomic, Epidemiological, and Clinical Description of the SARS-CoV-2 Omicron Variant in Mexico CityAlberto Cedro‐Tanda, Laura Gómez-Romero, Guillermo de Anda‐Jáuregui, Dora Garnica-López, Yair Alfaro‐Mora, Sonia Sánchez-Xochipa, Eulices F. García-García, Alfredo Mendoza-Vargas, Emmanuel Frías-Jiménez, Bernardo Moreno et al. · 2022 · Viruses
- Structural and functional insights into the evolution of SARS-CoV-2 KP.3.1.1 spike proteinZiqi Feng, Jiachen Huang, Sabyasachi Baboo, Jolene K. Diedrich, Sandhya Bangaru, James C. Paulson, John R. Yates, Meng Yuan, Ian A. Wilson, Andrew B. Ward · 2025 · Cell Reports
- Cancer Research: The Lessons to Learn from COVID-19Chris Bailey, James R. Black, Charles Swanton · 2020 · Cancer Discovery
- Accelerating ophthalmic artificial intelligence research: the role of an open access data repositoryAshley Kras, Leo Anthony Celi, John B. Miller · 2020 · Current Opinion in Ophthalmology
- Identification of Novel Candidate Epitopes on SARS-CoV-2 Proteins for South America: A Review of HLA Frequencies by CountryDavid Requena, Aldhair Médico, Ruy D. Chacón, Manuel Ramírez, Obert Marín-Sánchez · 2020 · Frontiers in Immunology
- Infection with different strains of SARS-COV-2 in patients with COVID-19Hayder Obayes Hashim, Mudher Mohammed, Mazin Jaafar Mousa, Hadeer H. Abdulameer, Alaa Tareq Shakir Al-Hassnawi, Safa A. Hassan, Mohammed Baqur S. Al‐Shuhaib · 2020 · Archives of Biological Sciences
- Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispeciesBilly T. Lau, Dmitri S. Pavlichin, Anna C. Hooker, Alison Figueroa Almeda, Gi Won Shin, Jiamin Chen, Malaya Kumar Sahoo, ChunHong Huang, Benjamin A. Pinsky, HoJoon Lee et al. · 2021 · Genome Medicine
- Identification of a novel SARS-CoV-2 P.1 sub-lineage in Brazil provides new insights about the mechanisms of emergence of variants of concernTiago Gräf, Gonzalo Bello, Tainá Moreira Martins Venas, Elisa Cavalcante Pereira, Anna Carolina Dias Paixão, Luciana Appolinario, Renata Serrano Lopes, Ana Carolina da Fonseca Mendonça, Alice Sampaio Barreto da Rocha, Fernando Couto Motta et al. · 2021 · Virus Evolution
- Detection of SARS‐CoV‐2 clade B.1.2 in three snow leopardsLeyi Wang, Zoltan S. Gyimesi, Mary Lea Killian, Mia Kim Torchetti, Colleen A. Olmstead, Richard L. Fredrickson, Karen A. Terio · 2022 · Transboundary and Emerging Diseases
- XBB.1.5 Kraken cracked: Gibbs energies of binding and biosynthesis of the XBB.1.5 variant of SARS-CoV-2Marko E. Popovic · 2023 · Microbiological Research
- Inferring effects of mutations on SARS-CoV-2 transmission from genomic surveillance dataBrian Lee, Ahmed Abdul Quadeer, Muhammad Saqib Sohail, Elizabeth Finney, Syed Faraz Ahmed, Matthew R. McKay, John P. Barton · 2025 · Nature Communications
- Exploring dynamics and network analysis of spike glycoprotein of SARS-COV-2Mahdi Ghorbani, Bernard R. Brooks, Jeffery B. Klauda · 2021 · Biophysical Journal
- Genomic characterization of SARS‐CoV‐2 isolates from patients in Turkey reveals the presence of novel mutations in spike and nsp12 proteinsErdem Şahin, Gülendam Bozdayı, Selin Yiğit, Hager Muftah, Murat Dizbay, Özlem Güzel Tunçcan, Işıl Fidan, Kayhan Çağlar · 2021 · Journal of Medical Virology
- Correlated sequence signatures are present within the genomic 5′UTR RNA and NSP1 protein in coronavirusesPiotr Sosnowski, Antonin Tidu, Gilbert Eriani, Éric Westhof, Franck Martin · 2022 · RNA
- Genomic epidemiology of Delta SARS-CoV-2 during transition from elimination to suppression in Aotearoa New ZealandLauren Jelley, Jordan Douglas, Xiaoyun Ren, David J. Winter, Andrea McNeill, Q. Sue Huang, Nigel Peter French, David Welch, James Hadfield, Joep de Ligt et al. · 2022 · Nature Communications
- Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New ZealandJemma L. Geoghegan, Xiaoyun Ren, Matthew Storey, James Hadfield, Lauren Jelley, Sarah Jefferies, Jill Sherwood, Shevaun Paine, Q. Sue Huang, Jordan Douglas et al. · 2020 · medRxiv
- Predicting the mutational drivers of future SARS-CoV-2 variants of concernM. Cyrus Maher, István Bartha, Steven Weaver, Julia di Iulio, Elena Ferri, Leah B. Soriaga, Florian A. Lempp, Brian Hie, Bryan D. Bryson, Bonnie Berger et al. · 2021 · DSpace@MIT (Massachusetts Institute of Technology)
- Genomic surveillance of SARS-CoV-2 Spike gene by sanger sequencingTiago Souza Salles, Andréa Cony Cavalcanti, Fábio Burack da Costa, Vanessa Zaquieu Dias, Leandro Magalhães de Souza, Marcelo Damião Ferreira de Meneses, José Antônio Suzano da Silva, Cinthya Domingues Amaral, Jhonatan Ramos Felix, Duleide Alves Pereira et al. · 2022 · PLoS ONE
- Gender Differences in Response to COVID-19 Infection and VaccinationKawther A. Zaher, Fatemah Salem Basingab, Jehan Alrahimi, Kholood Basahel, Alia Aldahlawi · 2023 · Biomedicines
- CoV-Seq, a New Tool for SARS-CoV-2 Genome Analysis and Visualization: Development and Usability StudyBoxiang Liu, Kaibo Liu, He Zhang, Liang Zhang, Yuchen Bian, Liang Huang · 2020 · Journal of Medical Internet Research
- Antigenic variation of SARS‐CoV‐2 in response to immune pressureDiego Forni, Rachele Cagliani, Chiara Pontremoli, Alessandra Mozzi, Uberto Pozzoli, Mario Clerici, Manuela Sironi · 2020 · Molecular Ecology
- Temporal increase in D614G mutation of SARS-CoV-2 in the Middle East and North AfricaMalik Sallam, Nidaa A. Ababneh, Deema Dababseh, Faris Ghalib Bakri, Azmi M. Mahafzah · 2021 · Heliyon
- Implementation of an in-house real-time reverse transcription-PCR assay for the rapid detection of the SARS-CoV-2 Marseille-4 variantMarielle Bedotto, Pierre‐Edouard Fournier, Linda Houhamdi, Anthony Levasseur, Jérémy Delerce, Lucile Pinault, Abdou Padane, Amanda Chamieh, Hervé Tissot‐Dupont, Philippe Brouqui et al. · 2021 · Journal of Clinical Virology
- Molecular Epidemiology of SARS-CoV-2 in Tunisia (North Africa) through Several Successive Waves of COVID-19Anissa Chouikha, Wasfi Farès, Asma Lamari, S Boubaker, Zeineb Belaiba, Kaïs Ghedira, Wafa Kammoun Rebai, Kaouther Ayouni, Marwa Khedhiri, Samar Ben Halima et al. · 2022 · Viruses
- Estimating the strength of selection for new SARS-CoV-2 variantsChristiaan Hendrik van Dorp, Emma E. Goldberg, Nicolas Hengartner, Ruian Ke, Ethan Obie Romero-Severson · 2021 · Nature Communications
- SARS-CoV-2 Membrane Protein: From Genomic Data to Structural New InsightsCatarina Marques-Pereira, Manuel Pires, Raquel P. Gouveia, Nádia N. Pereira, Ana B. Caniceiro, Nícia Rosário‐Ferreira, Irina Sousa Moreira · 2022 · International Journal of Molecular Sciences
- Alterations in SARS-CoV-2 Omicron and Delta peptides presentation by HLA moleculesStepan A. Nersisyan, Anton Zhiyanov, Maria Zakharova, Irina A. Ishina, Inna N. Kurbatskaia, Azad E. Mamedov, Alexei Vladimirovich Galatenko, M. Yu. Shkurnikov, Alexander G. Gabibov, Alexander Tonevitsky · 2022 · PeerJ
- Modelling COVID-19 vaccine breakthrough infections in highly vaccinated Israel—The effects of waning immunity and third vaccination doseAnyin Feng, Uri Obolski, Lewi Stone, Daihai He · 2022 · PLOS Global Public Health
- Structural basis of broad SARS-CoV-2 cross-neutralization by affinity-matured public antibodiesDaniel J. Sheward, Pradeepa Pushparaj, Hrishikesh Das, Allison J. Greaney, Changil Kim, Sungyong Kim, Leo Hanke, Erik Hyllner, Robert Dyrdak, Jimin Lee et al. · 2024 · Cell Reports Medicine
- Structural and Functional Comparison of SARS-CoV-2-Spike Receptor Binding Domain Produced in Pichia pastoris and Mammalian CellsClaudia R. Arbeitman, Gabriela Alejandra Auge, Matı́as Blaustein, Luis M. Bredeston, Enrique Corapi, Patricio O. Craig, Leandro A. Cossio, Liliana Daín, Cecilia D’Alessio, Fernanda Elias et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- Role of SARS-CoV-2 mutations in the evolution of the COVID-19 pandemicPhilippe Colson, Hervé Chaudet, Jérémy Delerce, Pierre Pontarotti, Anthony Levasseur, Jacques Fantini, Bernard La Scola, Christian Albert Devaux, Didier Raoult · 2024 · Journal of Infection
- Repurposed drugs and nutraceuticals targeting envelope protein: A possible therapeutic strategy against COVID-19Gourab Das, Troyee Das, Nilkanta Chowdhury, Durbadal Chatterjee, Angshuman Bagchi, Zhumur Ghosh · 2020 · Genomics
- Genomic Surveillance of SARS-CoV-2: Distribution of Clades in the Republic of Korea in 2020Ae Kyung Park, Il‐Hwan Kim, Junyoung Kim, Jeong‐Min Kim, Heui Man Kim, Chae Young Lee, Myung Guk Han, Gi‐eun Rhie, Donghyok Kwon, Jeong‐Gu Nam et al. · 2021 · Osong Public Health and Research Perspectives
- Exploring the Regulatory Function of the N‐terminal Domain of SARS‐CoV‐2 Spike Protein through Molecular Dynamics SimulationYao Li, Tong Wang, Juanrong Zhang, Bin Shao, Haipeng Gong, Yusong Wang, Xinheng He, Siyuan Liu, Tie‐Yan Liu · 2021 · Advanced Theory and Simulations
- The Runaway Evolution of SARS-CoV-2 Leading to the Highly Evolved Delta StrainYongsen Ruan, Mei Hou, Xiaolu Tang, Xionglei He, Xuemei Lu, Jian Lü, Chung‐I Wu, Haijun Wen · 2022 · Molecular Biology and Evolution
- Impact of antigen test target failure and testing strategies on the transmission of SARS-CoV-2 variantsClaudia Del Vecchio, Bethan Cracknell Daniels, Giuseppina Brancaccio, Alessandra Rosalba Brazzale, Enrico Lavezzo, Constanze Ciavarella, Francesco Onelia, Elisa Franchin, Laura Manuto, Federico Bianca et al. · 2022 · Nature Communications
- Never ending story? Evolution of SARS-CoV-2 monitored through Gibbs energies of biosynthesis and antigen-receptor binding of Omicron BQ.1, BQ.1.1, XBB and XBB.1 variantsMarko E. Popovic · 2023 · Microbial Risk Analysis
- Incorporating variant frequencies data into short-term forecasting for COVID-19 cases and deaths in the USA: a deep learning approachHongru Du, Ensheng Dong, Hamada S. Badr, Mary E. Petrone, Nathan D. Grubaugh, Lauren Gardner · 2023 · EBioMedicine
- Characterization of SARS-CoV-2 Omicron BA.2.75 clinical isolatesRyuta Uraki, Shun Iida, Peter Halfmann, Seiya Yamayoshi, Yuichiro Hirata, Kiyoko Iwatsuki‐Horimoto, Maki Kiso, Mutsumi Ito, Yuri Furusawa, Hiroshi Ueki et al. · 2023 · Nature Communications
- MicroGMT: A Mutation Tracker for SARS-CoV-2 and Other Microbial Genome SequencesYue Xing, Xiao Li, Xiang Gao, Qunfeng Dong · 2020 · Frontiers in Microbiology
- Computational Analysis of SARS-CoV-2 and SARS-Like Coronavirus Diversity in Human, Bat and Pangolin PopulationsNicholas J Dimonaco, Mazdak Salavati, Barbara Bo-Ju Shih · 2020 · Viruses
- Developing effective siRNAs to reduce the expression of key viral genes of COVID-19Renfei Wu, Kathy Qian Luo · 2021 · International Journal of Biological Sciences
- High throughput diagnostics and dynamic risk assessment of SARS-CoV-2 variants of concernAlfredo Maria Gravagnuolo, Layla Faqih, Cara Cronshaw, Jackie Wynn, Lewis Burglin, Paul E. Klapper, Mark J Wigglesworth · 2021 · EBioMedicine
- Variation at Spike position 142 in SARS-CoV-2 Delta genomes is a technical artifact caused by dropout of a sequencing ampliconTheo Sanderson, Jeffrey C. Barrett · 2021 · Wellcome Open Research
- SCoV2-MD: a database for the dynamics of the SARS-CoV-2 proteome and variant impact predictionsMariona Torrens‐Fontanals, Alejandro Peralta-García, Carmine Talarico, Ramón Guixà-González, Toni Giorgino A, Jana Selent · 2021 · Nucleic Acids Research
- Novel dynamic residue network analysis approaches to study allosteric modulation: SARS-CoV-2 M pro and its evolutionary mutations as a case studyOlivier Sheik Amamuddy, Rita Afriyie Boateng, Victor Barozi, Dorothy Wavinya Nyamai, Özlem Taştan Bishop · 2021 · Computational and Structural Biotechnology Journal
- Rescuing low frequency variants within intra-host viral populations directly from Oxford Nanopore sequencing dataYunxi Liu, Joshua Kearney, Medhat Mahmoud, Bryce L. Kille, Fritz Joachim Sedlazeck, Todd J. Treangen · 2022 · Nature Communications
- Three-Dimensional Visualization of Viral Structure, Entry, and Replication Underlying the Spread of SARS-CoV-2James W. Saville, Alison Berezuk, Shanti Swaroop Srivastava, Sriram Subramaniam · 2022 · Chemical Reviews
- Genomic evidence for divergent co-infections of co-circulating SARS-CoV-2 lineagesHangyu Zhou, Ye‐Xiao Cheng, Lin Sen Xu, Jia-Ying Li, Chenyue Tao, Chengyang Ji, Na Han, Rong Yang, Hui Ming Wu, Yaling Li et al. · 2022 · Computational and Structural Biotechnology Journal
- Phylodynamics of SARS-CoV-2 transmission in SpainFrancisco Díez‐Fuertes, María Iglesias‐Caballero, Sara Monzón, Pilar Jiménez, Sarai Varona, Isabel Cuesta, Ángel Zaballos, Michael M. Thomson, Mercedes Jiménez, Javier García‐Pérez et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- Neutralizing activity of Sputnik V vaccine sera against SARS-CoV-2 variantsSatoshi Ikegame, Mohammed Nure Alam Siddiquey, Chuan-Tien Hung, Griffin D. Haas, Luca Brambilla, Kasopefoluwa Y. Oguntuyo, Shreyas Kowdle, Ariel Esteban Vilardo, Alexis Edelstein, Claudia Perandones et al. · 2021 · medRxiv
- Rapid characterization of a Delta-Omicron SARS-CoV-2 recombinant detected in EuropeEtienne Simon‐Lorière, Xavier Montagutelli, Frederic Lemoine, Flora Donati, Franck Touret, Jérôme Bourret, Matthieu Prot, Sandie Munier, Mikaël Attia, Laurine Conquet et al. · 2022 · Research Square
- The Case for Genomic Surveillance in AfricaRachel Ochola · 2025 · Tropical Medicine and Infectious Disease
- PACIFIC: a lightweight deep-learning classifier of SARS-CoV-2 and co-infecting RNA virusesPablo Acera Mateos, Renzo F. Balboa, Simon Easteal, Eduardo Eyras, Hardip R. Patel · 2021 · Scientific Reports
- Genomic surveillance activities unveil the introduction of the SARS‐CoV‐2 B.1.525 variant of interest in Brazil: Case reportFelicidade Mota Pereira, Stephane Fraga de Oliveira Tosta, Maricélia Maia de Lima, Luciana Reboredo de Oliveira da Silva, Vanessa Brandão Nardy, Marcela Gómez, Jaqueline Gomes Lima, Vagner Fonseca, Túlio de Oliveira, José Lourenço et al. · 2021 · Journal of Medical Virology
- Resistance of SARS-CoV-2 variants to neutralization by antibodies induced in convalescent patients with COVID-19Yu Kaku, Takeo Kuwata, Hasan Md Zahid, Takao Hashiguchi, Takeshi Noda, Noriko Kuramoto, Shashwata Biswas, Kaho Matsumoto, Mikiko Shimizu, Yoko Kawanami et al. · 2021 · Cell Reports
- Monitoring the SARS-CoV-2 pandemic: screening algorithm with single nucleotide polymorphism detection for the rapid identification of established and emerging variantsJoachim C. Mertens, Jasmine Coppens, Katherine Loens, Marie Le Mercier, Basil Britto Xavier, Christine Lammens, Sarah Vandamme, Hilde Jansens, Herman Goossens, Veerle Matheeussen · 2021 · Clinical Microbiology and Infection
- Emerging Mutations in Nsp1 of SARS-CoV-2 and Their Effect on the Structural StabilityKejie Mou, Farwa Mukhtar, Muhammad Tahir Khan, Doaa Bahaa Eldin Darwish, Shaoliang Peng, Shabbir Muhammad, Abdullah Godran Al-Sehemi, Dong‐Qing Wei · 2021 · Pathogens
- Interaction Analysis of the Spike Protein of Delta and Omicron Variants of SARS-CoV-2 with hACE2 and Eight Monoclonal Antibodies Using the Fragment Molecular Orbital MethodSungbo Hwang, Seung‐Hwa Baek, Daeui Park · 2022 · Journal of Chemical Information and Modeling
- Genomic Epidemiology of SARS-CoV-2 Divulge B.1, B.1.36, and B.1.1.7 as the Most Dominant Lineages in First, Second, and Third Wave of SARS-CoV-2 Infections in PakistanAtia Basheer, Imran Zahoor · 2021 · Microorganisms
- Genomic surveillance of SARS-CoV-2 Omicron variants on a university campusAna A. Weil, Kyle G Luiten, Amanda M. Casto, Julia Catherine Bennett, Jessica O’Hanlon, Peter D. Han, Luis S. Gamboa, Evan McDermot, Melissa Truong, Geoffrey S. Gottlieb et al. · 2022 · Nature Communications
- Evolutionary rate of SARS-CoV-2 increases during zoonotic infection of farmed minkAshleigh F. Porter, Damian F. J. Purcell, Benjamin P. Howden, Sebastián Duchêne · 2023 · Virus Evolution
- Emergence and spread of two SARS-CoV-2 variants of interest in NigeriaIdowu B. Olawoye, Paul E. Oluniyi, Judith Uche Oguzie, Jessica N. Uwanibe, Adeyemi T. Kayode, Testimony Jesupamilerin Olumade, Fehintola Victoria Ajogbasile, Edyth Parker, Philomena Eromon, Priscilla Abechi et al. · 2023 · Nature Communications
- The SARS-CoV-2 protein ORF3c is a mitochondrial modulator of innate immunityHazel Stewart, Yongxu Lu, Sarah M. O’Keefe, Anusha Valpadashi, Luis Daniel Cruz‐Zaragoza, Hendrik A. Michel, Samantha K. Nguyen, George Carnell, Nina I. Lukhovitskaya, Rachel Milligan et al. · 2023 · iScience
- Efficient and robust search of microbial genomes via phylogenetic compressionKarel Břinda, Leandro Lima, Simone Pignotti, Natalia Quinones‐Olvera, Kamil Salikhov, Rayan Chikhi, Grégory Kucherov, Zamin Iqbal, Michael Baym · 2025 · Nature Methods
- Interim Analysis of Pandemic Coronavirus Disease 2019 (COVID-19) and the SARS-CoV-2 virus in Latin America and the Caribbean: Morbidity, Mortality and Molecular Testing Trends in the RegionKatherine Simbaña‐Rivera, Lenin Gómez‐Barreno, Jhon Guerrero, Fernanda Simbaña-Guaycha, Raúl Fernández, Andrés López‐Cortés, Alex J. J. Lister, Esteban Ortiz‐Prado · 2020 · medRxiv
- Analysis of SARS-CoV-2 genome evolutionary patternsShubhangi Gupta, Deepanshu Gupta, Sonika Bhatnagar · 2024 · Microbiology Spectrum
- Circumpolar spread of avian influenza H5N1 to southern Indian Ocean islandsAugustin Clessin, François‐Xavier Briand, J Tornos, Mathilde Lejeune, Camille De Pasquale, Romain Fischer, Florent Souchaud, Edouard Hirchaud, Samuel Leandro Hong, Tristan Bralet et al. · 2025 · Nature Communications
- SARS‐CoV‐2 worldwide replication drives rapid rise and selection of mutations across the viral genome: a time‐course study – potential challenge for vaccines and therapiesStefanie Weber, Christina M. Ramirez, Barbara Weiser, Harold Burger, Walter Doerfler · 2021 · EMBO Molecular Medicine
- Genomic epidemiology of a densely sampled COVID-19 outbreak in ChinaLily Geidelberg, Olivia Boyd, David Jorgensen, Igor A. Siveroni, Fabrícia Ferreira do Nascimento, Robert Johnson, Manon Ragonnet‐Cronin, Han Jing Fu, Haowei Wang, Xiaoyue Xi et al. · 2020 · Virus Evolution
- Mutations in the SARS-CoV-2 spike protein modulate the virus affinity to the human ACE2 receptor, an in silico analysisJoseph T. Ortega, Flor Helene Pujol, Beata Jastrzębska, Hector Rafael Rangel · 2021 · EXCLI journal
- In-Silico analysis reveals lower transcription efficiency of C241T variant of SARS-CoV-2 with host replication factors MADP1 and hnRNP-1Armi M Chaudhari, Minal Chaudhari, Sapna Mahera, Zuber Saiyed, Neelam Mustakali Nathani, Shantanu P. Shukla, Dhaval Patel, Chirag Patel, Madhvi N. Joshi, Chaitanya G. Joshi · 2021 · Informatics in Medicine Unlocked
- Evolution of viral variants in remdesivir‐treated and untreated SARS‐CoV‐2‐infected pediatrics patientsFlorencia A. T. Boshier, Juanita Pang, Justin Penner, Joseph Hughes, Matthew D. Parker, James Shepherd, Nele Alders, Alasdair Bamford, Louis Grandjean, Stephanie Grünewald et al. · 2021 · Journal of Medical Virology
- Decomposing the sources of SARS-CoV-2 fitness variation in the United StatesLenora M. Kepler, Marco Hamins-Puértolas, David A. Rasmussen · 2021 · Virus Evolution
- Reduced subgenomic RNA expression is a molecular indicator of asymptomatic SARS-CoV-2 infectionChee‐Hong Wong, Chew Yee Ngan, Rachel L. Goldfeder, Jennifer Idol, Chris Kuhlberg, Rahul Maurya, Kevin Kelly, Gregory Omerza, Nicholas Renzette, Francine De Abreu et al. · 2021 · Communications Medicine
- Multistate Outbreak of SARS-CoV-2 Infections, Including Vaccine Breakthrough Infections, Associated with Large Public Gatherings, United StatesRadhika V. Gharpure, Samira Sami, Johanna Vostok, Hillary Johnson, Noemi Borsay Hall, Anne Foreman, Rebecca T. Sabo, Petra L. Schubert, Hanna M. Shephard, Vance R. Brown et al. · 2021 · Emerging infectious diseases