Data, disease and diplomacy: GISAID's innovative contribution to global health
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Items 201–300 of 1,005
- Genetic diversity and evolutionary convergence of cryptic SARS- CoV-2 lineages detected via wastewater sequencingDevon A. Gregory, Mónica Trujillo, Clayton Rushford, Anna G. Flury, Sherin Kannoly, Kaung Myat San, Dustin T. Lyfoung, Roger W. Wiseman, Karen H. Bromert, Ming-Yi Zhou et al. · 2022 · PLoS Pathogens
- Science Diplomacy: Introduction to a Boundary ProblemCarolin Kaltofen, Michele Acuto · 2018 · Global Policy
- The Emergence of the Spike Furin Cleavage Site in SARS-CoV-2Yujia A. Chan, Shing H. Zhan · 2021 · Molecular Biology and Evolution
- A novel SARS-CoV-2 related coronavirus in bats from CambodiaVibol Hul, Déborah Delaune, Erik A. Karlsson, Alexandre Hassanin, Tey Putita Ou, Artem Baidaliuk, Fabiana Gámbaro, Vương Tân Tú, Lucy Keatts, Jonna A. K. Mazet et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- Next-Generation Sequencing for Confronting Virus PandemicsJosep Quer, Sergi Colomer‐Castell, Carolina Filardi de Campos, Cristina Andrés, María Piñana, María Francesca Cortese, Alejandra Gónzalez‐Sánchez, Damir García‐Cehic, Marta Ibañez‐Lligoña, Tomàs Pumarola et al. · 2022 · Viruses
- An Updated Review on SARS-CoV-2 Infection in AnimalsShujuan Cui, Yimeng Liu, Jiachen Zhao, Xiaomin Peng, Guilan Lu, Weixian Shi, Yang Pan, Daitao Zhang, Peng Yang, Quanyi Wang · 2022 · Viruses
- The Recovery, Interpretation and Use of Ancient Pathogen GenomesSebastián Duchêne, Simon Y. W. Ho, Ann G. Carmichael, Edward Charles Holmes, Hendrik N. Poinar · 2020 · Current Biology
- Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington StateNicola Felix Müller, Cassia Wagner, Chris D. Frazar, Pavitra Roychoudhury, Jover Lee, Louise H. Moncla, Benjamin Pelle, Matthew A. Richardson, Erica Ryke, Hong Jian Xie et al. · 2021 · Science Translational Medicine
- Trivalent Subunit Vaccine Candidates for COVID-19 and Their Delivery DevicesOscar Antonio Ortega-Rivera, Matthew D. Shin, Angela Chen, Veronique Beiss, Miguel A. Moreno‐Gonzalez, Miguel Alejandro Lopez‐Ramirez, Maria Reynoso, Hong Wang, Brett L. Hurst, Joseph Wang et al. · 2021 · Journal of the American Chemical Society
- Characteristics of the first 1119 SARS‐CoV‐2 Omicron variant cases, in Marseille, France, November−December 2021Linda Houhamdi, Philippe Gautret, Van Thuan Hoang, Pierre‐Edouard Fournier, Philippe Colson, Didier Raoult · 2022 · Journal of Medical Virology
- Omicron (B.1.1.529) - A new heavily mutated variant: Mapped location and probable properties of its mutations with an emphasis on S-glycoproteinChiranjib Chakraborty, Manojit Bhattacharya, Ashish Ranjan Sharma, Bidyut Mallik · 2022 · International Journal of Biological Macromolecules
- Molecular epidemiology of the SARS-CoV-2 variant Omicron BA.2 sub-lineage in Denmark, 29 November 2021 to 2 January 2022Fonager, Jannik, Bennedbæk, Marc, Bager, Peter, Wohlfahrt, Jan, Ellegaard, Kirsten Maren, Ingham, Anna Cäcilia, Edslev, Sofie Marie, Stegger, Marc, Sieber, Raphael Niklaus, Lassauniere, Ria et al. · 2022 · Eurosurveillance
- Detection and Genome Sequencing of SARS-CoV-2 in a Domestic Cat with Respiratory Signs in SwitzerlandJulia Klaus, Marina Luisa Meli, Barbara Willi, Sarah Nadeau, Christian Beisel, Tanja Stadler, ETH SARS-CoV-2 Sequencing Team, Herman F. Egberink, Shan Zhao, Hans Lutz et al. · 2021 · Viruses
- RNA Viromics of Southern California Wastewater and Detection of SARS-CoV-2 Single-Nucleotide VariantsJason A. Rothman, Theresa B. Loveless, Joseph Kapcia, Eric D. Adams, Joshua A. Steele, Amity G. Zimmer-Faust, Kylie Langlois, David Wanless, Madison Griffith, Lucy Mao et al. · 2021 · Applied and Environmental Microbiology
- Nosocomial outbreak caused by the SARS-CoV-2 Delta variant in a highly vaccinated population, Israel, July 2021Pnina Shitrit, Neta S. Zuckerman, Orna Mor, Bat‐Sheva Gottesman, Michal Chowers · 2021 · Eurosurveillance
- Mutations in SARS-CoV-2 structural proteins: a global analysisMohammad Abavisani, Karim Rahimian, Bahar Mahdavi, Samaneh Tokhanbigli, Mahsa Mollapour Sisakht, Amin Farhadi, Mansoor Kodori, Mohammadamin Mahmanzar, Zahra Meshkat · 2022 · Virology Journal
- GESS: a database of global evaluation of SARS-CoV-2/hCoV-19 sequencesShuyi Fang, Kailing Li, Jikui Shen, Sheng Liu, Juli Liu, Lei Yang, Chang‐Deng Hu, Jun Wan · 2020 · Nucleic Acids Research
- Nucleic Acid Testing of SARS-CoV-2Hee Min Yoo, Il-Hwan Kim, Seil Kim · 2021 · International Journal of Molecular Sciences
- Potential Resistance of SARS-CoV-2 Main Protease (Mpro) against Protease Inhibitors: Lessons Learned from HIV-1 ProteaseJános András Mótyán, Mohamed Mahdi, Gyula Hoffka, József Tőzsér · 2022 · International Journal of Molecular Sciences
- Lessons from SARS-CoV-2 in India: A data-driven framework for pandemic resilienceMaxwell Salvatore, Rupam Bhattacharyya, Soumik Purkayastha, Lauren Zimmermann, Debashree Ray, Aditi Hazra, Michael Kleinsasser, Thomas A. Mellan, C Whittaker, Seth R Flaxman et al. · 2022 · Science Advances
- Genetic Spectrum and Distinct Evolution Patterns of SARS-CoV-2Sheng Liu, Jikui Shen, Shuyi Fang, Kailing Li, Juli Liu, Lei Yang, Chang‐Deng Hu, Jun Wan · 2020 · Frontiers in Microbiology
- Omicron-B.1.1.529 leads to widespread escape from neutralizing antibody responsesWanwisa Dejnirattisai, Jiandong Huo, Daming Zhou, Jiří Zahradník, Piyada Supasa, Chang Liu, Helen M. E. Duyvesteyn, Helen Mary Ginn, Alexander J. Mentzer, Aekkachai Tuekprakhon et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- Genomic Evidence of In-Flight Transmission of SARS-CoV-2 Despite Predeparture TestingTara Swadi, Jemma L. Geoghegan, Tom Devine, Caroline McElnay, Jillian Sherwood, Phil Shoemack, Xiaoyun Ren, Matt Storey, Sarah Jefferies, Erasmus Smit et al. · 2021 · Emerging infectious diseases
- Comprehensive mapping of binding hot spots of SARS-CoV-2 RBD-specific neutralizing antibodies for tracking immune escape variantsChunyan Yi, Xiaoyu Sun, Yixiao Lin, Chenjian Gu, Longfei Ding, Xiaoxia Lü, Zhuo Yang, Yaguang Zhang, Liyan Ma, Wangpeng Gu et al. · 2021 · Genome Medicine
- RT-qPCR Assays for Rapid Detection of the N501Y, 69-70del, K417N, and E484K SARS-CoV-2 Mutations: A Screening Strategy to Identify Variants With Clinical ImpactNatali Vega‐Magaña, Rocío Sánchez-Sánchez, Jorge Hernández‐Bello, Alberto Antony Venancio-Landeros, Marcela Peña Rodríguez, Rosa Alejandra Vega-Zepeda, Byron Galindo-Ornelas, Mauricio Díaz-Sánchez, Mariel García‐Chagollán, Gabriela Macedo Ojeda et al. · 2021 · Frontiers in Cellular and Infection Microbiology
- Free Energy Landscapes from SARS-CoV-2 Spike Glycoprotein Simulations Suggest that RBD Opening Can Be Modulated via Interactions in an Allosteric PocketLucy Fallon, Kellon A. A. Belfon, Lauren E. Raguette, Yuzhang Wang, Darya Stepanenko, Abbigayle E. Cuomo, Jose Guerra, Stephanie Budhan, Sarah Varghese, Christopher P. Corbo et al. · 2021 · Journal of the American Chemical Society
- Targeting genomic SARS-CoV-2 RNA with siRNAs allows efficient inhibition of viral replication and spreadShubhankar S. Ambike, Cho‐Chin Cheng, Martin Feuerherd, Stoyan Velkov, Domizia Baldassi, Suliman Qadir Afridi, Diana Porras-Gonzalez, Xin Chuan Wei, Philipp Hagen, Nikolaus Kneidinger et al. · 2021 · Nucleic Acids Research
- Structural Analysis of Neutralizing Epitopes of the SARS-CoV-2 Spike to Guide Therapy and Vaccine Design StrategiesMaxwell T. Finkelstein, Adam G. Mermelstein, Emma Parker Miller, Paul C. Seth, Erik-Stephane D. Stancofski, Daniela Fera · 2021 · Viruses
- Genomic Perspectives on the Emerging SARS-CoV-2 Omicron VariantWentai Ma, Jing Yang, Haoyi Fu, Chao Su, Caixia Yu, Qihui Wang, Ana Tereza Ribeiro de Vasconcelos, Georgii A. Bazykin, Yīmíng Bào, Mingkun Li · 2022 · Genomics Proteomics & Bioinformatics
- Short linear motif candidates in the cell entry system used by SARS-CoV-2 and their potential therapeutic implicationsBálint Mészáros, Hugo Sámano‐Sánchez, Jesús Alvarado-Valverde, Jelena Čalyševa, Elizabeth Martínez‐Pérez, Renato Alves, Denis C. Shields, Manjeet Kumar, Friedrich Rippmann, Lucia Beatriz Chemes et al. · 2021 · Science Signaling
- An updated analysis of variations in SARS-CoV-2 genomeOsman Mutluhan Uğurel, Oğuz Ata, Dilek Turgut‐Balik · 2020 · TURKISH JOURNAL OF BIOLOGY
- Landscape and selection of vaccine epitopes in SARS-CoV-2Christof C. Smith, Kelly Shea Olsen, Kaylee M. Gentry, Maria J. Sambade, Wolfgang A. Beck, Jason A. Garness, Sarah Entwistle, Caryn Willis, Steven P. Vensko II, Allison Woods et al. · 2021 · Genome Medicine
- Artificial Intelligence in Global HealthSara E. Davies · 2019 · Ethics & International Affairs
- Retrieval and Investigation of Data on SARS-CoV-2 and COVID-19 Using Bioinformatics ApproachMuhamad Fahmi, Viol Dhea Kharisma, Arif Nur Muhammad Ansori, Masahiro Ito · 2021 · Advances in experimental medicine and biology
- Monitoring Emergence of the SARS-CoV-2 B.1.1.7 Variant through the Spanish National SARS-CoV-2 Wastewater Surveillance System (VATar COVID-19)Albert Carcereny, Adán Martínez-Velázquez, Albert Bosch, Ana Allende, Pilar Truchado, Jenifer Cascales, Jesús L. Romalde, Marta Lois, David Polo, Glòria Sánchez et al. · 2021 · Environmental Science & Technology
- SARS-CoV-2 Delta (B.1.617.2) Variant: A Unique T478K Mutation in Receptor Binding Motif (RBM) of Spike GeneHyunjhung Jhun, Ho‐Young Park, Yasmin Hisham, Chang‐Seon Song, Soohyun Kim · 2021 · Immune Network
- Emergency SARS-CoV-2 Variants of Concern: Novel Multiplex Real-Time RT-PCR Assay for Rapid Detection and SurveillanceHsing‐Yi Chung, Ming‐Jr Jian, Chih-Kai Chang, Jung‐Chung Lin, Kuo‐Ming Yeh, Chien‐Wen Chen, Shan‐Shan Hsieh, Kuo‐Sheng Hung, Shenghui W. Tang, Cherng‐Lih Perng et al. · 2022 · Microbiology Spectrum
- A SARS-CoV-2 variant elicits an antibody response with a shifted immunodominance hierarchyAllison J. Greaney, Tyler N. Starr, Rachel T. Eguia, Andrea N. Loes, Khadija Khan, Farina Karim, Sandile Cele, John E. Bowen, Jennifer K. Logue, Davide Corti et al. · 2022 · PLoS Pathogens
- Critical Sequence Hotspots for Binding of Novel Coronavirus to Angiotensin Converter Enzyme as Evaluated by Molecular SimulationsMahdi Ghorbani, Bernard R. Brooks, Jeffery B. Klauda · 2020 · The Journal of Physical Chemistry B
- Universal Influenza Virus Neuraminidase Vaccine Elicits Protective Immune Responses against Human Seasonal and Pre-pandemic StrainsAmanda L. Skarlupka, Anne-Gaelle Bebin-Blackwell, Spencer F. Sumner, Ted M. Ross · 2021 · Journal of Virology
- A Simple Reverse Transcriptase PCR Melting-Temperature Assay To Rapidly Screen for Widely Circulating SARS-CoV-2 VariantsPadmapriya P. Banada, Raquel Green, Sukalyani Banik, Abby Chopoorian, Deanna L. Streck, Robert Jones, Soumitesh Chakravorty, David Alland · 2021 · Journal of Clinical Microbiology
- The landscape of antibody binding affinity in SARS-CoV-2 Omicron BA.1 evolutionAlief Moulana, Thomas Dupic, Angela M. Phillips, Jeffrey Chang, Anne A. Roffler, Allison J. Greaney, Tyler N. Starr, Jesse D. Bloom, Michael M. Desai · 2023 · eLife
- Discovery of a SARS-CoV-2 variant from the P.1 lineage harboring K417T/E484K/N501Y mutations in Kofu, JapanYosuke Hirotsu, Masao Omata · 2021 · Journal of Infection
- Structure-altering mutations of the SARS-CoV-2 frameshifting RNA elementTamar Schlick A, Qiyao Zhu, Swati Jain, Shuting Yan · 2020 · Biophysical Journal
- Structural basis for accommodation of emerging B.1.351 and B.1.1.7 variants by two potent SARS-CoV-2 neutralizing antibodiesGabriele Cerutti, Micah Rapp, Yicheng Guo, Fabiana A. Bahna, Jude Saber Bimela, Eswar R. Reddem, Jian Yu, Pengfei Wang, Lihong Liu, Yaoxing Huang et al. · 2021 · Structure
- Omicron SARS-CoV-2 Variant Spike Protein Shows an Increased Affinity to the Human ACE2 Receptor: An In Silico AnalysisJoseph T. Ortega, Beata Jastrzębska, Hector Rafael Rangel · 2021 · Pathogens
- Multiple COVID-19 Waves and Vaccination Effectiveness in the United StatesLixin Lin, Yanji Zhao, Boqiang Chen, Daihai He · 2022 · International Journal of Environmental Research and Public Health
- Lower respiratory tract infections in children requiring mechanical ventilation: a multicentre prospective surveillance study incorporating airway metagenomicsAlexandra Tsitsiklis, Christina M. Osborne, Jack Kamm, Kayla M. Williamson, Katrina Kalantar, Gytis Dudas, Saharai Caldera, Amy Lyden, Michelle Tan, Norma F Neff et al. · 2022 · The Lancet Microbe
- Omicron variant (B.1.1.529) of SARS-CoV-2: understanding mutations in the genome, S-glycoprotein, and antibody-binding regionsManojit Bhattacharya, Ashish Ranjan Sharma, Kuldeep Dhama, Govindasamy Agoramoorthy, Chiranjib Chakraborty · 2022 · GeroScience
- Unlocking capacities of genomics for the COVID-19 response and future pandemicsSergey Knyazev, Karishma Chhugani, Varuni Sarwal, Ram Ayyala, Harman Singh, Smruthi Karthikeyan, Dhrithi Deshpande, Pelin Icer Baykal, Zoia Comarova, Angela Lu et al. · 2022 · Nature Methods
- Impact of SARS-CoV-2 Gamma lineage introduction and COVID-19 vaccination on the epidemiological landscape of a Brazilian cityCecília Ártico Banho, Lívia Sacchetto, Guilherme Rodrigues Fernandes Campos, Cíntia Bittar, Fábio Sossai Possebon, Leila Sabrina Ullmann, Beatriz de Carvalho Marques, Gislaine Celestino Dutra da Silva, Marília Mazzi Moraes, Maisa Carla Pereira Parra et al. · 2022 · Communications Medicine
- Rapid, Sensitive, and Specific Severe Acute Respiratory Syndrome Coronavirus 2 Detection: A Multicenter Comparison Between Standard Quantitative Reverse-Transcriptase Polymerase Chain Reaction and CRISPR-Based DETECTREelke T. Brandsma, Han J. M. P. Verhagen, Thijs J. W. van de Laar, Eric C. J. Claas, Marion T. E. Cornelissen, Emile van den Akker · 2020 · The Journal of Infectious Diseases
- Identification of SARS-CoV-2 Nucleocapsid and Spike T-Cell Epitopes for Assessing T-Cell ImmunityEunok Lee, Kerrie J. Sandgren, Gabriel Duette, Vicki V Stylianou, Rajiv Khanna, John‐Sebastian Eden, Emily Blyth, David J. Gottlieb, Anthony Lawrence Cunningham, Sarah Palmer · 2020 · Journal of Virology
- High-resolution epitope mapping and characterization of SARS-CoV-2 antibodies in large cohorts of subjects with COVID-19Winston A. Haynes, Kathy Kamath, Joel D. Bozekowski, Elisabeth Baum, Melissa Campbell, Arnau Casanovas‐Massana, Patrick S. Daugherty, Charles S. Dela Cruz, Abhilash Dhal, Shelli Farhadian et al. · 2021 · Communications Biology
- Discovery of ultrapotent broadly neutralizing antibodies from SARS-CoV-2 elite neutralizersKanika Vanshylla, Chengcheng Fan, Marie Wunsch, Nareshkumar Poopalasingam, Matthijs Meijers, Christoph Kreer, Franziska Kleipass, Denis Ruchnewitz, Meryem Seda Ercanoglu, Henning Gruell et al. · 2021 · Cell Host & Microbe
- SARS-CoV-2 Omicron (B.1.1.529) Infection of Wild White-Tailed Deer in New York CityKurt J. Vandegrift, Michele Yon, Meera Surendran Nair, Abhinay Gontu, Santhamani Ramasamy, Saranya Amirthalingam, Sabari Nath Neerukonda, Ruth Helmus Nissly, Shubhada K. Chothe, Padmaja Jakka et al. · 2022 · Viruses
- Insights on cross-species transmission of SARS-CoV-2 from structural modelingJoão Rodrigues, Susana Barrera-Vilarmau, João M. C. Teixeira, Marija Sorokina, Elizabeth Seckel, Panagiotis L. Kastritis, Michael Levitt · 2020 · PLoS Computational Biology
- Intra-Host Diversity of SARS-Cov-2 Should Not Be Neglected: Case of the State of Victoria, AustraliaAlix Augusto Armero, Nicolás Berthet, Jean‐Christophe Avarre · 2021 · Viruses
- Detecting SARS-CoV-2 variants with SNP genotypingHelen Harper, Amanda J. Burridge, Mark Winfield, Adam H.R. Finn, Andrew D. Davidson, David A. Matthews, Stephanie Hutchings, Barry B. Vipond, Nisha Jain, Keith J. Edwards et al. · 2021 · PLoS ONE
- Near real-time determination of B.1.1.7 in proportion to total SARS-CoV-2 viral load in wastewater using an allele-specific primer extension PCR strategyTyson Ernst Graber, Élisabeth Mercier, Kamya Bhatnagar, Meghan L. M. Fuzzen, Patrick M. D’Aoust, Huy‐Dung Hoang, Xin Tian, Syeda Tasneem Towhid, Julio Plaza‐Díaz, Walaa Eid et al. · 2021 · Water Research
- Transmission of SARS-CoV-2 from humans to animals and potential host adaptationCedric C.S. Tan, Su Datt Lam, Damien Richard, Christopher J. Owen, Dorothea Berchtold, Christine Anne Orengo, Meera Surendran Nair, Suresh Varma Kuchipudi, Vivek Kapur, Lucy van Dorp et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- Short linear motif candidates in the cell entry system used by SARS-CoV-2 and their potential therapeutic implicationsBálint Mészáros, Sámano Sánchez, Hugo, Alvarado Valverde, Jesús, Jelena Čalyševa, Martinez Perez, Elizabeth, Renato Alves, Denis C. Shields, Manjeet Kumar, Friedrich Rippmann, Lucia Beatriz Chemes et al. · 2021 · CONICET Digital (CONICET)
- SARS-CoV-2 E Gene Variant Alters Analytical Sensitivity Characteristics of Viral Detection Using a Commercial Reverse Transcription-PCR AssayStephen Tahan, Bijal A. Parikh, Lindsay Droit, Meghan A. Wallace, Carey‐Ann D. Burnham, David Wang · 2021 · Journal of Clinical Microbiology
- Neutralizing monoclonal antibodies elicited by mosaic RBD nanoparticles bind conserved sarbecovirus epitopesChengcheng Fan, Alexander A. Cohen, Miso Park, Alfur Fu-Hsin Hung, Jennifer R. Keeffe, Priyanthi N.P. Gnanapragasam, Yu Erica Lee, Han Gao, Leesa M. Kakutani, Ziyan Wu et al. · 2022 · Immunity
- Widespread exposure to SARS-CoV-2 in wildlife communitiesAmanda R. Goldberg, Kate E. Langwig, Katherine L. Brown, Jeffrey M. Marano, Pallavi Rai, Kelsie M. King, Amanda K. Sharp, Alessandro Ceci, Christopher D. Kailing, Macy J. Kailing et al. · 2024 · Nature Communications
- Impact of ADAR-induced editing of minor viral RNA populations on replication and transmission of SARS-CoV-2Johan Ringlander, Joshua Fingal, Hanna Kann, Kasthuri Prakash, Gustaf E. Rydell, Maria Andersson, Anna Martner, Magnus Lindh, Peter Horal, Kristoffer Hellstrand et al. · 2022 · Proceedings of the National Academy of Sciences
- Reduction in the infection fatality rate of Omicron variant compared with previous variants in South AfricaYuan Liu, Yangyang Yu, Yanji Zhao, Daihai He · 2022 · International Journal of Infectious Diseases
- Detection of Hemagglutinin H5 Influenza A Virus Sequence in Municipal Wastewater Solids at Wastewater Treatment Plants with Increases in Influenza A in Spring, 2024Marlene K. Wolfe, Dorothea H. Duong, Bridgette Shelden, Elana M. G. Chan, Vikram Chan-Herur, Stephen Patrick Hilton, Abigail P. Paulos, Xiangru Xu, Alessandro Zulli, Bradley J. White et al. · 2024 · Environmental Science & Technology Letters
- Detection and characterization of the SARS-CoV-2 lineage B.1.526 in New YorkAnthony P. West, Joel O. Wertheim, Jade C. Wang, Tetyana I. Vasylyeva, Jennifer L. Havens, Moinuddin A. Chowdhury, Edimarlyn Gonzalez, Courtney E. Fang, Steve S. Di Lonardo, Scott Hughes et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- Transmission from vaccinated individuals in a large SARS-CoV-2 Delta variant outbreakKatherine J. Siddle, Lydia Andreyevna Krasilnikova, Gage K. Moreno, Stephen F. Schaffner, Johanna Vostok, Nicholas A. Fitzgerald, Jacob E. Lemieux, Nikolaos Barkas, Christine Loreth, Ivan Specht et al. · 2021 · Cell
- Preliminary case report on the SARS-CoV-2 cluster in the UK, France, and SpainEmma B. Hodcroft · 2020 · Swiss Medical Weekly
- Mutations of SARS-CoV-2 nsp14 exhibit strong association with increased genome-wide mutation loadDoğa Eskier, Aslı Süner, Yavuz Oktay, Gökhan Karakülah · 2020 · PeerJ
- New Pathways of Mutational Change in SARS-CoV-2 Proteomes Involve Regions of Intrinsic Disorder Important for Virus Replication and ReleaseTre Tomaszewski, Ryan S. DeVries, Mengyi Dong, Gitanshu Bhatia, Miles D. Norsworthy, Xuying Zheng, Gustavo Caetano‐Anollés · 2020 · Evolutionary Bioinformatics
- Estimating and explaining the spread of COVID-19 at the county level in the USAAnthony R. Ives, Claudio Bozzuto · 2021 · Communications Biology
- Dynamics of a Dual SARS-CoV-2 Lineage Co-Infection on a Prolonged Viral Shedding COVID-19 Case: Insights into Clinical Severity and Disease DurationNicole Pedro, Cláudio Silva, Ana C. Magalhães, Bruno Cavadas, Ana Mafalda Rocha, Ana C. Moreira, Maria Salomé Gomes, Diogo Silva, Joana Sobrinho‐Simões, Angélica Ramos et al. · 2021 · Microorganisms
- Potential G-quadruplexes and i-Motifs in the SARS-CoV-2E. Belmonte-Reche, I. Serrano-Chacón, C. González, Juan Gallo, M. Bañobre-López · 2021 · PLoS ONE
- Rapid Increase of SARS-CoV-2 Variant B.1.1.7 Detected in Sewage Samples from England between October 2020 and January 2021Thomas Wilton, Erika Bujáki, Dimitra Klapsa, Manasi Majumdar, Maria Cristina Fleischmann Alves Zambon, Martin Fritzsche, Ryan Mate, Javier Escalada-San Martín · 2021 · mSystems
- Substitutions near the HA receptor binding site explain the origin and major antigenic change of the B/Victoria and B/Yamagata lineagesMiruna E. Rosu, Pascal Lexmond, Theo M. Bestebroer, Blake Marie Hauser, Derek J. Smith, Sander Herfst, Ron A. M. Fouchier · 2022 · Proceedings of the National Academy of Sciences
- A conserved oligomerization domain in the disordered linker of coronavirus nucleocapsid proteinsHuaying Zhao, Di Wu, Sergio A. Hassan, Ai Nguyen, Jiji Chen, Grzegorz Piszczek, Peter Schuck · 2023 · Science Advances
- In vitro selection and analysis of SARS-CoV-2 nirmatrelvir resistance mutations contributing to clinical virus resistance surveillanceYuao Zhu, Irina Yurgelonis, Stephen Noell, Qingyi Yang, Shunjie Guan, Zheng-Hui Li, Hao Li, Hussin A. Rothan, Devendra K. Rai, Patricia McMonagle et al. · 2024 · Science Advances
- Reduced antibody cross-reactivity following infection with B.1.1.7 than with parental SARS-CoV-2 strainsFaulkner, Nikhil, Ng, Kevin W, Wu, Mary Y, Harvey, Ruth, Margaritis, Marios, Paraskevopoulou, Stavroula, Houlihan, Catherine, Hussain, Saira, Greco, Maria, Bolland, William et al. · 2021 · eLife
- Emerging variants of concern in SARS-CoV-2 membrane protein: a highly conserved target with potential pathological and therapeutic implicationsLi Shen, Jennifer Dien Bard, Timothy Junius Triche, Alexander Russell Judkins, Jaclyn A. Biegel, Xiaowu Gai · 2021 · Emerging Microbes & Infections
- MDM-TASK-web: MD-TASK and MODE-TASK web server for analyzing protein dynamicsOlivier Sheik Amamuddy, Michael Glenister, Thulani Tshabalala, Özlem Taştan Bishop · 2021 · Computational and Structural Biotechnology Journal
- Rare, convergent antibodies targeting the stem helix broadly neutralize diverse betacoronavirusesCherrelle Dacon, Linghang Peng, Ting-Hui Lin, Courtney Tucker, Chang-Chun David Lee, Yu Cong, Lingshu Wang, Lauren Purser, Andrew J. R. Cooper, Jazmean K. Williams et al. · 2022 · Cell Host & Microbe
- Synchrony of Bird Migration with Global Dispersal of Avian Influenza Reveals Exposed Bird OrdersQiqi Yang, Ben Wang, Philippe Lemey, Lü Dong, Tong Mu, R. Alex Wiebe, Fengyi Guo, Nídia Sequeira Trovão, Sang Woo Park, Nicola S. Lewis et al. · 2024 · Nature Communications
- Need for effective detection and early warnings for epidemic and pandemic preparedness planning in the context of multi-hazards: Lessons from the COVID-19 pandemicThushara Kamalrathne, Dilanthi Amaratunga, Richard Haigh, Lahiru Kodituwakku · 2023 · International Journal of Disaster Risk Reduction
- Continental synchronicity of human influenza virus epidemics despite climactic variationJemma L. Geoghegan, Aldo F. Saavedra, Sebastián Duchêne, Sheena G. Sullivan, Ian Barr, Edward Charles Holmes · 2018 · PLoS Pathogens
- Rapid characterization of spike variants via mammalian cell surface displayKamyab Javanmardi, Chia‐Wei Chou, Cynthia I. Terrace, Ankur Annapareddy, Tamer Saad Kaoud, Qingqing Guo, Josh Lutgens, Hayley Zorkic, Andrew P. Horton, Elizabeth C. Gardner et al. · 2021 · Molecular Cell
- Compartmentalized Replication of SARS-Cov-2 in Upper vs. Lower Respiratory Tract Assessed by Whole Genome Quasispecies AnalysisMartina Rueca, Barbara Bartolini, Cesare Ernesto Maria Gruber, Antonio Piralla, Fausto Baldanti, Emanuela Giombini, Francesco Messina, Luisa Marchioni, Giuseppe Ippolito, Antonino Di et al. · 2020 · Microorganisms
- EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data SetsKalen Cantrell, Marcus W. Fedarko, Gibraan Rahman, Daniel T. McDonald, Yimeng Yang, Thant Zaw, Antonio González, Stefan Janssen, Mehrbod Estaki, Niina Haiminen et al. · 2021 · mSystems
- T-CoV: a comprehensive portal of HLA-peptide interactions affected by SARS-CoV-2 mutationsStepan A. Nersisyan, Anton Zhiyanov, M. Yu. Shkurnikov, Alexander Tonevitsky · 2021 · Nucleic Acids Research
- Escape of SARS-CoV-2 Variants KP.1.1, LB.1, and KP.3.3 From Approved Monoclonal AntibodiesDelphine Planas, Isabelle Staropoli, Cyril Planchais, Emilie Yab, Banujaa Jeyarajah, Yannis Rahou, Matthieu Prot, Florence Guivel‐Benhassine, Frederic Lemoine, Vincent Enouf et al. · 2024 · Pathogens and Immunity
- Why All the Fury over Furin?Essam Eldin A. Osman, Alnawaz Rehemtulla, Nouri Neamati · 2021 · Journal of Medicinal Chemistry
- Pre-existing T cell-mediated cross-reactivity to SARS-CoV-2 cannot solely be explained by prior exposure to endemic human coronavirusesCedric C.S. Tan, Christopher J. Owen, Christine Y. L. Tham, Antonio Bertoletti, Lucy van Dorp, François Balloux · 2021 · Infection Genetics and Evolution
- Ongoing Recombination in SARS-CoV-2 Revealed through Genealogical ReconstructionAnastasia Ignatieva, Jotun Hein, Paul A. Jenkins · 2022 · Molecular Biology and Evolution
- SARS-CoV-2 spike protein: structure, viral entry and variantsBing Chen, Michael Farzan, Hyeryun Choe · 2025 · Nature Reviews Microbiology
- Understanding mutation hotspots for the SARS-CoV-2 spike protein using Shannon Entropy and K-means clusteringBaishali Mullick, Rishikesh Magar, Aastha Jhunjhunwala, Amir Barati Farimani · 2021 · Computers in Biology and Medicine
- LamPORE: rapid, accurate and highly scalable molecular screening for SARS-CoV-2 infection, based on nanopore sequencingPhillip L. James, David Stoddart, Eoghan Donal Harrington, John Beaulaurier, Lynn Ly, Stuart W Reid, Daniel J. Turner, Sissel Juul · 2020 · medRxiv
- Spike Protein NTD mutation G142D in SARS-CoV-2 Delta VOC lineages is associated with frequent back mutations, increased viral loads, and immune evasionLi Shen, Timothy Junius Triche, Jennifer Dien Bard, Jaclyn A. Biegel, Alexander Russell Judkins, Xiaowu Gai · 2021 · medRxiv
- Anti-Frameshifting Ligand Active against SARS Coronavirus-2 Is Resistant to Natural Mutations of the Frameshift-Stimulatory PseudoknotKrishna Neupane, Sneha Munshi, Meng Qi Zhao, Dustin B. Ritchie, Sandaru M. Ileperuma, Michael T. Woodside · 2020 · Journal of Molecular Biology