Data, disease and diplomacy: GISAID's innovative contribution to global health

Cited by (1,006)

Items 801–900 of 1,006

1. Unsupervised cluster analysis of SARS‐CoV‐2 genomes reflects its geographic progression and identifies distinct genetic subgroups of SARS‐CoV‐2 virus
   Georg Hahn, Sanghun Lee, Scott T. Weiss, Christoph Lange · 2021 · Genetic Epidemiology
2. The first SARS-CoV-2 genetic variants of concern (VOC) in Poland: The concept of a comprehensive approach to monitoring and surveillance of emerging variants
   Radosław Charkiewicz, Jacek Nikliński, Przemysław Biecek, Joanna Kiśluk, Sławomir Andrzej Pancewicz, Anna M. Moniuszko-Malinowska, Robert Flisiak, Adam Jacek Kretowski, Janusz Bogdan Dzięcioł, Marcin Moniuszko et al. · 2021 · Advances in Medical Sciences
3. COVID-19 in Women's health: Epidemiology
   Jennifer Elizabeth Jardine, Edward Morris · 2021 · Best Practice & Research Clinical Obstetrics & Gynaecology
4. Arthropod Ectoparasites Have Potential to Bind SARS-CoV-2 via ACE
   Su Datt Lam, Paul Ashford, Sandra Diaz Sanchez, Margarita Villar, Christian Gortázar, José de la Fuente, Christine Anne Orengo · 2021 · Viruses
5. Mutational Asymmetries in the SARS-CoV-2 Genome May Lead to Increased Hydrophobicity of Virus Proteins
   Roman Matyášek, Kateřina Řehůřková, Kristýna Marošiová, Aleš Kovařı́k · 2021 · Genes
6. Survey of SARS-CoV-2 genetic diversity in two major Brazilian cities using a fast and affordable Sanger sequencing strategy
   Erick Gustavo Dorlass, Karine Lima Lourenço, Rubens Daniel Miserani Magalhães, Hugo Itaru Sato, Alex Fiorini, Renata Barbosa Peixoto, Helena Perez Coelho, Bruna Larotonda Telezynski, Guilherme Pereira Scagion, Tatiana Ometto et al. · 2021 · Genomics
7. Insights Into the Changing Landscape of Coronavirus Disease 2019
   Ruby A. Escobedo, Deepak Kaushal, Dhiraj Kumar Singh · 2022 · Frontiers in Cellular and Infection Microbiology
8. Immunoinformatics approach of epitope prediction for SARS-CoV-2
   Nourelislam Awad, Rania Hassan Mohamed, Nehal I. Ghoneim, Ahmed Osama Elmehrath, Nagwa El‐Badri · 2022 · Journal of Genetic Engineering and Biotechnology
9. Conservation and Evolution of Antigenic Determinants of SARS-CoV-2: An Insight for Immune Escape and Vaccine Design
   Varun K. Jaiswal, Hae‐Jeung Lee · 2022 · Frontiers in Immunology
10. Immuno-informatics analysis predicts B and T cell consensus epitopes for designing peptide vaccine against SARS-CoV-2 with 99.82% global population coverage.
    Priyank Shukla, Preeti Pandey, Bodhayan Prasad, Tony Robinson, Rituraj Purohit, Leon Gerard D'Cruz, Murtaza M. Tambuwala, Ankur Mutreja, Jim Harkin, Taranjit Singh et al. · 2022 · Apollo (University of Cambridge)
11. Evolutionary Traits and Genomic Surveillance of SARS-CoV-2 in South America
    Pablo A. Ortíz-Pineda, Carlos Hernán Sierra-Torres · 2022 · Global Health
12. Global estimates of the fitness advantage of SARS-CoV-2 variant Omicron
    Christiaan Hendrik van Dorp, Emma E. Goldberg, Ruian Ke, Nicolas Hengartner, Ethan Obie Romero-Severson · 2022 · Virus Evolution
13. Sentinel Surveillance System Implementation and Evaluation for SARS-CoV-2 Genomic Data, Washington, USA, 2020–2021
    Hanna N. Oltean, Krisandra J. Allen, Lauren A. Frisbie, Stephanie M. Lunn, Laura Marcela Torres, Lillian M. Manahan, Ian S Painter, Denny Russell, Avi Singh, JohnAric MoonDance Peterson et al. · 2023 · Emerging infectious diseases
14. Environmental surveillance for COVID-19 using SARS-CoV-2 RNA concentration in wastewater – a study in District East, Karachi, Pakistan
    Nadia Ansari, Furqan Kabir, Waqasuddin Khan, Farah Khalid, Amyn A. Malik, Joshua L. Warren, Usma Mehmood, Abdul Momin Kazi, Inci B. Yildirim, Windy D. Tanner et al. · 2023 · The Lancet Regional Health - Southeast Asia
15. Phylodynamic analysis in the understanding of the current COVID-19 pandemic and its utility in vaccine and antiviral design and assessment
    J. Cardona-Ospina, Diana M. Rojas-Gallardo, S. Garzón-Castaño, E. Jiménez-Posada, A. Rodriguez-Morales · 2021 · Human Vaccines & Immunotherapeutics
16. Sequencing Using a Two-Step Strategy Reveals High Genetic Diversity in the S Gene of SARS-CoV-2 after a High-Transmission Period in Tunis, Tunisia
    Wasfi Farès, Kais Ghedira, Mariem Gdoura, Anissa Chouikha, S Boubaker, Marwa Khedhiri, Kaouthar Ayouni, Asma Lamari, Henda Touzi, Walid Hammemi et al. · 2021 · Microbiology Spectrum
17. SARS-CoV-2 Variant Tracking and Mitigation During In-Person Learning at a Midwestern University in the 2020-2021 School Year
    Carolina Avendaño, Aaron Lilienfeld, Liz Rulli, Melissa Stephens, Wendy Alvarez Barrios, Joseph Sarro, Michael E. Pfrender, Marie Lynn Miranda · 2022 · JAMA Network Open
18. The newly introduced SARS-CoV-2 variant A222V is rapidly spreading in Lazio region, Italy
    Barbara Bartolini, Martina Rueca, Cesare Ernesto Maria Gruber, Francesco Messina, Emanuela Giombini, Giuseppe Ippolito, Maria Rosaria Capobianchi, Antonino Di · 2020 · medRxiv
19. Effectiveness of Primary and Booster COVID-19 mRNA Vaccination against Omicron Variant SARS-CoV-2 Infection in People with a Prior SARS-CoV-2 Infection
    Margaret L. Lind, Alexander James Robertson, Júlio Dos Santos Silva, Frederick J. Warner, Andreas C. Coppi, Nathan D. Price, Chelsea Duckwall, Peri Sosensky, Eréndira C. Di Giuseppe, Ryan Borg et al. · 2022 · medRxiv
20. Delineating antibody escape from Omicron sublineages
    Henning Gruell, Kanika Vanshylla, Michael Korenkov, Pinkus Tober‐Lau, Matthias Zehner, Friederike Münn, Hanna Janicki, Max Augustin, Philipp Schommers, Leif Erik Sander et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
21. Compensatory epistasis maintains ACE2 affinity in SARS-CoV-2 Omicron BA.1
    Alief Moulana, Thomas Dupic, Angela M. Phillips, Jeffrey Chang, Serafina Nieves, Anne A. Roffler, Allison J. Greaney, Tyler N. Starr, Jesse D. Bloom, Michael M. Desai · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
22. Artificial Intelligence and Machine Learning Applications in Vaccine Development
    Ali Sarmadi, Majid Hassanzadeganroudsari, Mohsen Beikali Soltani · 2023
23. Correlates of SARS-CoV-2 Variants on Deaths, Case Incidence and Case Fatality Ratio among the Continents for the Period of 1 December 2020 to 15 March 2021
    Wajdy Al‐Awaida, Baker Jawabrah Al‐Hourani, Samer Fuad Swedan, Refat M. Nimer, Foad Alzoughool, Hamzeh J. Al‐Ameer, Sara E. Al Tamam, Raghad Alashqar, Omar Al bawareed, Yulia Sh. Gushchina et al. · 2021 · Genes
24. LAPIS is a fast web API for massive open virus sequencing data
    Chaoran Chen, Alexander Taepper, Fabian Engelniederhammer, Jonas Kellerer, Cornelius Roemer, Tanja Stadler · 2023 · BMC Bioinformatics
25. Plants Showing Anti-Viral Activity with Emphasis on Secondary Metabolites and Biological Screening
    Dilipkumar Pal, Padum Lal · 2023 · Reference series in phytochemistry
26. Data on SARS-CoV-2 events in animals: Mind the gap!
    Afra Nerpel, Annemarie Käsbohrer, Chris Walzer, Amélie Desvars-Larrive · 2023 · One Health
27. Inferring country-specific import risk of diseases from the world air transportation network
    Pascal Klamser, Adrian Zachariae, Benjamin F. Maier, Olga Baranov, Clara Jongen, Frank Schlosser, Dirk Brockmann · 2024 · PLoS Computational Biology
28. Whole-Genome Sequence of an Avian Influenza A/H9N2 Virus Isolated from an Apparently Healthy Chicken at a Live-Poultry Market in Indonesia
    Arindita Niatazya Novianti, Krisnoadi Rahardjo, Rima Ratnanggana Prasetya, Aldise Mareta Nastri, Jezzy Renova Dewantari, Adi Prijo Rahardjo, Agnes Theresia Soelih Estoepangestie, Yohko K. Shimizu, Emmanuel Djoko Poetranto, Gatot Soegiarto et al. · 2019 · Microbiology Resource Announcements
29. Quantitative phylogenomic evidence reveals a spatially structured SARS-CoV-2 diversity
    Leandro Roberto Jones, Julieta Marina Manrique · 2020 · Virology
30. Genomic investigation of the coronavirus disease-2019 outbreak in the Republic of Korea
    Jeong‐Min Kim, Sung Yong Park, Dae-Sang Lee, Jun-Sub Kim, Young-Joon Park, Jin Gwack, Mi Young Kim, Dong Hyun Song, Seong Tae Jeong, Yoon‐Seok Chung et al. · 2021 · Scientific Reports
31. SARS-CoV-2 Genomes From Oklahoma, United States
    Sai Sankara Narayanan, John C. Ritchey, Girish Patil, Teluguakula Narasaraju, Sunil More, Jerry R. Malayer, Jeremiah T. Saliki, Anil Kaul, Pratul K. Agarwal, Akhilesh Ramachandran · 2021 · Frontiers in Genetics
32. Current mutatome of SARS-CoV-2 in Turkey reveals mutations of interest
    Doğa Eskier, Evren AKALP, Özlem Dalan, Gökhan Karakülah, Yavuz Oktay · 2021 · TURKISH JOURNAL OF BIOLOGY
33. Molecular Evolution and Epidemiological Characteristics of SARS COV-2 in (Northwestern) Poland
    Karol Serwin, Andrzej Ossowski, Maria Szargut, Sandra Cytacka, Anna Urbańska, Adam Majchrzak, Anna Niedźwiedź, Ewa Czerska, Anna Pawińska-Matecka, Joanna Gołąb et al. · 2021 · Viruses
34. Hotspots for mutations in the SARS-CoV-2 spike glycoprotein: a correspondence analysis
    Mohammad Reza Rahbar, Abolfazl Jahangiri, Saeed Khalili, Mahboubeh Zarei, Kamran Mehrabani-Zeinabad, Bahman Khalesi, Navid Pourzardosht, Anahita Hessami, Navid Nezafat, Saman Sadraei et al. · 2021 · Scientific Reports
35. SARS-CoV-2 Virology
    Yijia Li, Jonathan Z. Li · 2022 · Infectious Disease Clinics of North America
36. Modeling the Transmission of the SARS-CoV-2 Delta Variant in a Partially Vaccinated Population
    Ugo Avila-Ponce de León, Eric José Avila-Vales, Kuan‐lin Huang · 2022 · Viruses
37. Evidence for Recombination as an Evolutionary Mechanism in Coronaviruses: Is SARS-CoV-2 an Exception?
    Zisis Kozlakidis · 2022 · Frontiers in Public Health
38. Viral RNA Load in Symptomatic and Asymptomatic COVID-19 Omicron Variant-Positive Patients
    Qian Wu, Lixia Shi, Haomin Li, Shu-ping Huang, Hongwei Li, Li Li, Jin Han, Qi Wu, Zhengcun Pei · 2022 · Canadian Respiratory Journal
39. Bioinformatics analysis of the s2m mutations within the SARS‐CoV‐2 Omicron lineages
    Caleb James Frye, Morgan Shine, Joseph A. Makowski, Adam H. Kensinger, Caylee L. Cunningham, Ella J. Milback, Jeffrey D. Evanseck, Patrick E. Lackey, Mihaela‐Rita Mihailescu · 2022 · Journal of Medical Virology
40. Use of Whole-Genome Sequencing to Estimate the Contribution of Immune Evasion and Waning Immunity on Decreasing COVID-19 Vaccine Effectiveness
    Margaret L. Lind, Richard Copin, Shane McCarthy, Andreas C. Coppi, Fred Warner, David J. P. Ferguson, Chelsea Duckwall, Ryan Borg, M. Catherine Muenker, John D. Overton et al. · 2022 · The Journal of Infectious Diseases
41. Ginger ring compounds as an inhibitor of spike binding protein of alpha, beta, gamma and delta variants of SARS-CoV-2: An in-silico study
    Tarique Noorul Hasan, S Sajjad Naqvi, Mati Ur Rehman, Rooh Ullah, Muhammad Ammad, Narmeen Arshad, Qurat Ul Ain, Shabana Perween, Arif Hussain · 2023 · Narra J
42. Variation in synonymous evolutionary rates in the SARS-CoV-2 genome
    Qianru Sun, Jinfeng Zeng, Kang Lai Tang, Haoyu Long, Chi Zhang, Jie Zhang, Jing Yan Tang, Yuting Xin, Jialu Zheng, Litao Sun et al. · 2023 · Frontiers in Microbiology
43. SARS2Mutant: SARS-CoV-2 amino-acid mutation atlas database
    Karim Rahimian, Ehsan Arefian, Bahar Mahdavi, Mohammadamin Mahmanzar, Donna Lee Kuehu, Youping Deng · 2023 · NAR Genomics and Bioinformatics
44. The importance of equally accessible genomic surveillance in the age of pandemics
    Safia Zeghbib, Gábor Kemenesi, Ferenc Jakab · 2023 · Biologia Futura
45. Sequencing of monkeypox virus from infected patients reveals viral genomes with APOBEC3‐like editing, gene inactivation, and bacterial agents of skin superinfection
    Philippe Colson, Gwilherm Penant, Jérémy Delerce, Céline Boschi, Nathalie Wurtz, Marielle Bedotto, S. Branger, Philippe Brouqui, Philippe Parola, Jean‐Christophe Lagier et al. · 2023 · Journal of Medical Virology
46. Epidemiology and phylodynamics of multiple clades of H5N1 circulating in domestic duck farms in different production systems in Bangladesh
    Ariful Islam, Mohammad Enayet Hossain, Emama Amin, Shariful Islam, Monjurul Islam, Md. Abu Sayeed, Md. Mehedi Hasan, Mojnu Miah, Mohammad Mahmudul Hassan, Mohammed Ziaur Rahman et al. · 2023 · Frontiers in Public Health
47. Genomic epidemiology and evolutionary analysis during XBB.1.16-predominant periods of SARS-CoV-2 omicron variant in Bangkok, Thailand: December 2022–August 2023
    Jiratchaya Puenpa, Jira Chansaenroj, Kamol Suwannakarn, Yong Poovorawan · 2024 · Scientific Reports
48. Research Article Temporal data series and logistic models reveal the dynamics of SARS-CoV-2 spike protein D614G variant in the COVID-19 pandemic
    F. Antoneli, T.N. Furuyama, Isabel M. V. Guedes de Carvalho, Marcelo R. S. Briones, Luiz Mário Janini · 2021 · Genetics and Molecular Research
49. Mutation in a SARS-CoV-2 Haplotype from Sub-Antarctic Chile Reveals New Insights into the Spike’s Dynamics
    Jorge González-Puelma, Jacqueline Aldridge, Marco Montes de, Mónica Pinto, Roberto Uribe-Paredes, José Fernández-Goycoolea, Diego Álvarez-Saravia, Hermy Álvarez, Gonzalo Encina, Thomas Weitzel et al. · 2021 · Viruses
50. SARS-CoV-2 Portrayed against HIV: Contrary Viral Strategies in Similar Disguise
    R. Duerr, Keaton M. Crosse, Ana M. Valero-Jimenez, Meike Dittmann · 2021 · Microorganisms
51. Population Genomics Approaches for Genetic Characterization of SARS-CoV-2 Lineages
    Fatima Mostefai, Isabel Gamache, Arnaud N’Guessan, Justin Pelletier, Jessie Huang, Carmen Lía Murall, Ahmad Pesaranghader, Vanda Gaonac’h-Lovejoy, David J. Hamelin, Raphaël Poujol et al. · 2022 · Frontiers in Medicine
52. Rapid SARS-CoV-2 Intra-Host and Within-Household Emergence of Novel Haplotypes
    L. Manuto, M. Grazioli, A. Spitaleri, P. Fontana, L. Bianco, L. Bertolotti, M. Bado, G. Mazzotti, F. Bianca, F. Onelia et al. · 2022 · Viruses
53. Evolutionary history of the SARS-CoV-2 Gamma variant of concern (P.1): a perfect storm
    Yuri Yépez, Mariana Marcano-Ruiz, Rafael S Bezerra, Bibiana Fam, João PB Ximenez, Wilson A Silva Jr, María Cátira Bortolini · 2022 · Genetics and Molecular Biology
54. Inferring selection effects in SARS-CoV-2 with Bayesian Viral Allele Selection
    Martin Jankowiak, Fritz H. Obermeyer, Jacob E. Lemieux · 2022 · PLoS Genetics
55. Early warning of emerging infectious diseases based on multimodal data
    Haotian Ren, Yunchao Ling, Ruifang Cao, Zhen Wang, Yixue Li, Tao Huang · 2023 · Biosafety and Health
56. A CRISPR-based SARS-CoV-2 diagnostic assay that is robust against viral evolution and RNA editing
    Kean Hean Ooi, Douglas Jie Wen Tay, Seok Yee Teo, Mengying Mandy Liu, Pornchai Kaewsapsak, Jin Sheng-yang, Yong‐Gui Gao, Meng How Tan · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
57. SARS-CoV-2 spike D614G variant exhibits highly efficient replication and transmission in hamsters
    Bobo Wing-Yee Mok, Conor J. Cremin, Siu-Ying Lau, Shaofeng Deng, Pin Chen, Jinxia Zhang, Andrew Chak-Yiu Lee, Honglian Liu, Siwen Liu, Timothy Ting-Leung Ng et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
58. Genomic diversity and evolution of coronavirus (SARS-CoV-2) in France from 309 COVID-19-infected patients
    Anthony Levasseur, Jérémy Delerce, Aurélia Caputo, Ludivine Bréchard, Philippe Colson, Jean‐Christophe Lagier, Pierre‐Edouard Fournier, Didier Raoult · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
59. SARS-CoV-2 NSP3, NSP4 and NSP6 mutations and Epistasis during the pandemic in the world: Evolutionary Trends and Natural Selections in Six Continents
    Haniyeh Fooladinezhad, Maryam Shahidi, Mohammadamin Mahmanzar, Bahar Mahdavi, Samaneh Tokhanbigli, Mahsa Mollapour Sisakht, Bahman Moradi, Mohamad Reza Ganjalikhany, Karim Rahimian, Mazdak Ganjalıkhani-Hakemi · 2022 · medRxiv
60. Mass mortality events in the sub-Antarctic Indian Ocean caused by long-distance circumpolar spread of highly pathogenic avian influenza H5N1 clade 2.3.4.4b
    Augustin Clessin, François‐Xavier Briand, J Tornos, Mathilde Lejeune, Camille De Pasquale, Romain Fischer, Florent Souchaud, Edouard Hirchaud, Tristan Bralet, Christophe Guinet et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
61. Avian Influenza Virus A(H5N1) Genotype D1.1 Is Better Adapted to Human Nasal and Airway Organoids Than Genotype B3.13
    Xiaojuan Zhang, Stephanie Joy-Ann Lam, Lin‐Lei Chen, Carol Ho-Yan Fong, Wan-Mui Chan, Jonathan Daniel Ip, Shaofeng Deng, Siwen Liu, Rachel Chun-Yee Tam, Pui Wang et al. · 2025 · The Journal of Infectious Diseases
62. The frequency of defective genomes in Omicron differs from that of the Alpha, Beta and Delta variants
    Carolina Filardi de Campos, Sergi Colomer‐Castell, Damir García‐Cehic, Josep Gregori, Cristina Andrés, María Piñana, Alejandra Gónzalez‐Sánchez, Blanca Borràs-Bermejo, Oleguer Parés‐Badell, Caroline Melanie Adombi et al. · 2022 · Scientific Reports
63. Implementation of California COVIDNet – a multi-sector collaboration for statewide SARS-CoV-2 genomic surveillance
    Debra A. Wadford, Nikki Baumrind, Elizabeth F. Baylis, John Bell, Ellen L. Bouchard, Megan Crumpler, Eric M. Foote, Sabrina Gilliam, Carol Ann Glaser, Jill K. Hacker et al. · 2023 · Frontiers in Public Health
64. Co-circulation of seasonal influenza A(H1N1)pdm09, A(H3N2) and B/Victoria lineage viruses with further genetic diversification, EU/EEA, 2022/23 influenza season
    Eeva Broberg, Olov Svartström, Maximilian Rieß, Annette Kraus, Maja Vukovikj, Angeliki Melidou · 2024 · Eurosurveillance
65. Emergence of highly pathogenic avian influenza viruses H5N1 and H5N5 in white-tailed eagles, 2021–2023
    Cathrine Arnason Bøe, Eve Zeyl Fiskebeck, Malin Rokseth Reiten, Johan Åkerstedt, Maryam Saghafian, Ragnhild Tønnessen, Britt Gjerset, Kjersti Sturød, Torfinn Moldal, Grim Rømo et al. · 2024 · Journal of General Virology
66. Does immune recognition of SARS-CoV2 epitopes vary between different ethnic groups?
    Tungadri Bose, Namrata Pant, Nishal Kumar Pinna, Subhrajit Bhar, Anirban Dutta, Sharmila S. Mande · 2021 · Virus Research
67. Data-driven case fatality rate estimation for the primary lineage of SARS-CoV-2 in Poland
    Krzysztof Gogolewski, Błażej Miasojedow, Małgorzata Sadkowska-Todys, Małgorzata Stępień, Urszula Anna Demkow, Agnieszka Lech, Ewa Szczurek, Daniel Rabczenko, Magdalena Rosińska, Anna Gambin · 2022 · Methods
68. Evidence of a SARS-CoV-2 double Spike mutation D614G/S939F potentially affecting immune response of infected subjects
    Sara Donzelli, Francesca Spinella, Enea Gino Di Domenico, Martina Pontone, Ilaria Cavallo, Giulia Orlandi, Stefania Iannazzo, Giulio Maria Ricciuto, ISG Virology Covid Team, Raul Pellini et al. · 2022 · Computational and Structural Biotechnology Journal
69. Conserved Pattern and Potential Role of Recurrent Deletions in SARS-CoV-2 Evolution
    Shenghui Weng, Hangyu Zhou, Chengyang Ji, Liang Li, Na Han, Rong Yang, Jingzhe Shang, Aiping Wu · 2022 · Microbiology Spectrum
70. Emergence of novel combinations of SARS-CoV-2 spike receptor binding domain variants in Senegal
    Ambroise Dioum Ahouidi, Mary A. Rodgers, Abdou Padane, Nafissatou Lèye, Ana Olivo, Moustapha Mbow, Aminata Mboup, Papa Alassane Diaw, Aminata Dia, Barbara Harris et al. · 2021 · Scientific Reports
71. Recent trends in next generation immunoinformatics harnessed for universal coronavirus vaccine design
    Chin Peng Lim, Boon Hui Kok, Hui Ting Lim, Candy Chuah, Badarulhisam Abdul‐Rahman, Abu Bakar Abdul Majeed, Michelle Wykes, Chiuan Yee Leow, Chiuan Yee Leow · 2022 · Pathogens and Global Health
72. A simple model to estimate the transmissibility of the Beta, Delta, and Omicron variants of SARS-COV-2 in South Africa
    Yangyang Yu, Yuan Liu, Shi Zhao, Daihai He · 2022 · Mathematical Biosciences & Engineering
73. Impact of SARS-CoV-2 Spike Mutations on Its Activation by TMPRSS2 and the Alternative TMPRSS13 Protease
    A. Stevaert, R. Van Berwaer, C. Mestdagh, J. Vandeput, E. Vanstreels, V. Raeymaekers, M. Laporte, L. Naesens · 2022 · mBio
74. Predicting Epitope Candidates for SARS-CoV-2
    Akshay Agarwal, Kristen L. Beck, Sara Capponi, Mark Kunitomi, Gowri Nayar, Ed Seabolt, Gandhar K. Mahadeshwar, Simone Bianco, Vandana V. Mukherjee, James H. Kaufman · 2022 · Viruses
75. Deconvoluting complex correlates of COVID-19 severity with a multi-omic pandemic tracking strategy
    Victoria Nicole Parikh, Alexander G. Ioannidis, David Jimenez‐Morales, John E. Gorzynski, Hannah N. De Jong, Xiran Liu, Jonasel Roque, Victoria P. Cepeda-Espinoza, Kazutoyo Osoegawa, Chris Hughes et al. · 2022 · Nature Communications
76. Bayesian Molecular Dating Analyses Combined with Mutational Profiling Suggest an Independent Origin and Evolution of SARS-CoV-2 Omicron BA.1 and BA.2 Sub-Lineages
    Naveen Kumar, Rahul Kaushik, Ashutosh Singh, Vladimir Nikolaevich Uversky, Kam Y. J. Zhang, Upasana Sahu, Sandeep Bhatia, Aniket Sanyal · 2022 · Viruses
77. Rapid Detection of SARS-CoV-2 RNA Using Reverse Transcription Recombinase Polymerase Amplification (RT-RPA) with Lateral Flow for N-Protein Gene and Variant-Specific Deletion–Insertion Mutation in S-Protein Gene
    Jose L. Malaga, Mónica J. Pajuelo, Michiko Okamoto, Emmanuel Kagning Tsinda, Kanako Otani, Pablo Tsukayama, Lucero Mascaro, Diego Cuicapuza, Masamichi Katsumi, Kazuhisa Kawamura et al. · 2023 · Viruses
78. Causal discovery using compression-complexity measures
    Pranay Sy, Nithin Nagaraj · 2021 · Journal of Biomedical Informatics
79. First Report on the Latvian SARS-CoV-2 Isolate Genetic Diversity
    Ņikita Zrelovs, Monta Ustinova, Ivars Silamiķelis, Līga Birzniece, Kaspars Megnis, Vita Rovīte, Lauma Freimane, Laila Silamiķele, Laura Ansone, Jānis Pjalkovskis et al. · 2021 · Frontiers in Medicine
80. Genomic Epidemiology and Transmission Dynamics of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) in Congregate Healthcare Facilities in Santa Clara County, California
    Tara MacCannell, Joshua Batson, Brandon J. Bonin, K C Astha, Rebecca Quenelle, Betsy Strong, Wen Lin, Sarah L. Rudman, David Dynerman, Patrick Ayscue et al. · 2021 · Clinical Infectious Diseases
81. Verification of the accuracy of the SIR model in forecasting based on the improved SIR model with a constant ratio of recovery to infection rate by comparing with monitored second wave data
    Martin Kröger, Reinhard Schlickeiser · 2021 · Royal Society Open Science
82. Generator based approach to analyze mutations in genomic datasets
    Siddharth Jain, Xiongye Xiao, Paul Bogdan, Jehoshua Bruck · 2021 · Scientific Reports
83. Molecular dynamic simulation analysis of SARS-CoV-2 spike mutations and evaluation of ACE2 from pets and wild animals for infection risk
    Ping Chen, Jingfang Wang, Xintian Xu, Yuping Li, Yan Zhu, Xuan Li, Ming Li, Pei Hao · 2021 · Computational Biology and Chemistry
84. Geographical Landscape and Transmission Dynamics of SARS-CoV-2 Variants Across India: A Longitudinal Perspective
    Neha Jha, Dwight Hall, Akshay Kanakan, Priyanka Mehta, Ranjeet Maurya, Quoseena Mir, Hunter Mathias Gill, Sarath Chandra Janga, Rajesh Pandey · 2021 · Frontiers in Genetics
85. The Easy-to-Use SARS-CoV-2 Assembler for Genome Sequencing: Development Study
    Martina Rueca, Emanuela Giombini, Francesco Messina, Barbara Bartolini, Antonino Di, Maria Rosaria Capobianchi, Cesare Ernesto Maria Gruber · 2022 · JMIR Bioinformatics and Biotechnology
86. Evolutionary history of the SARS-CoV-2 Gamma variant of concern (P.1): a perfect storm
    Mora, Yuri Belisario Yépez, Mariana Marcano-Ruiz, Rafael dos Santos Bezerra, Bibiana Sampaio de Oliveira Fam, João Paulo Bianchi Ximenez, Wilson A. Silva, María Cátira Bortolini · 2022 · LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Científicas)
87. Detection of SARS-CoV-2 Variants of Concern with Tiling Amplicon Sequencing from Wastewater
    Yu Wang, Gaofeng Ni, Wei Tian, Lin Yang, Ian Hosegood, Rhys Newell, Ben J. Woodcroft, Bicheng Yang, Shihu Hu, Jianhua Guo · 2022 · ACS ES&T Water
88. Molecular Analysis of SARS-CoV-2 Lineages in Armenia
    Diana Avetyan, Siras Hakobyan, Maria Nikogհosyan, Lilit Ghukasyan, Gisane Khachatryan, Tamara Sirunyan, Nelli Muradyan, Roksana Zakharyan, Andranik Chavushyan, Varduhi Hayrapetyan et al. · 2022 · Viruses
89. VirPool: model-based estimation of SARS-CoV-2 variant proportions in wastewater samples
    Askar Gafurov, Andrej Baláž, Fabian Amman, Kristína Boršová, Viktória Čabanová, Boris Klempa, Andreas Bergthaler, Tomáš Vinař, Broňa Brejová · 2022 · BMC Bioinformatics
90. Evaluation of WHO listed COVID-19 qPCR primers and probe in silico with 375 SERS-CoV-2 full genome sequences
    Derek Toms, Julang Li, Hugh Y. Cai · 2020 · medRxiv
91. SARS-CoV-2 spike protein predicted to form complexes with host receptor protein orthologues from a broad range of mammals
    Su Datt Lam, Nicola Bordin, Vaishali Waman, Harry M. Scholes, Paul Ashford, Neeladri Sen, Lucy van Dorp, Clemens Rauer, Natalie L. Dawson, Camilla Pang et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
92. Identification of a polymorphism in the N gene of SARS-CoV-2 that adversely impacts detection by a widely-used RT-PCR assay
    Manu Vanaerschot, Sabrina A Mann, James T. Webber, Jack Kamm, Sidney M. Bell, John Bell, Si Noon Hong, Minh Phuong Nguyen, Lienna Y. Chan, Karan D. Bhatt et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
93. Human organoid systems reveal in vitro correlates of fitness for SARS-CoV-2 B.1.1.7
    Mart Matthias Lamers, Tim I. Breugem, Anna Z. Mykytyn, Yiquan Wang, Nathalie Gröen, Kèvin Knoops, Debby Schipper, Jelte van der Vaart, Charlotte D. Koopman, Jingshu Zhang et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
94. SARS-CoV-2 lineage dynamics in England from January to March 2021 inferred from representative community samples
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