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New Approach to Oligonucleotide Microarrays Using Zirconium Phosphonate-Modified Surfaces

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Immobilized Metal Affinity Chromatography Revisited: pH/Acid Control toward High Selectivity in Phosphoproteomics

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NetPhosYeast: prediction of protein phosphorylation sites in yeast

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Quantitative Analysis of the Human Spindle Phosphoproteome at Distinct Mitotic Stages

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PhosphoPOINT: a comprehensive human kinase interactome and phospho-protein database

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Niobium(V) Oxide (Nb2O5): Application to Phosphoproteomics

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Effect of Peptide-to-TiO2 Beads Ratio on Phosphopeptide Enrichment Selectivity

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P3DB: a plant protein phosphorylation database

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Optimized IMAC−IMAC Protocol for Phosphopeptide Recovery from Complex Biological Samples

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TiO2-Based Phosphoproteomic Analysis of the Plasma Membrane and the Effects of Phosphatase Inhibitor Treatment

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Chemo-affinity of Titania for the Column-switching HPLC Analysis of Phosphopeptides

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PhosphoGRID: a database of experimentally verified in vivo protein phosphorylation sites from the budding yeast Saccharomyces cerevisiae

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Global Profiling of Phosphopeptides by Titania Affinity Enrichment

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SLoMo: Automated Site Localization of Modifications from ETD/ECD Mass Spectra

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Citrate boosts the performance of phosphopeptide analysis by UPLC-ESI-MS/MS.

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Exploring the Human Leukocyte Phosphoproteome Using a Microfluidic Reversed-Phase−TiO2−Reversed-Phase High-Performance Liquid Chromatography Phosphochip Coupled to a Quadrupole Time-of-Flight Mass Spectrometer

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Comparison of MS2-Only, MSA, and MS2/MS3 Methodologies for Phosphopeptide Identification

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Baseline Resolution of Isobaric Phosphorylated and Sulfated Peptides and Nucleotides by Electrospray Ionization FTICR MS: Another Step toward Mass Spectrometry-Based Proteomics

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Probing the Phosphoproteome of HeLa Cells Using Nanocast Metal Oxide Microspheres for Phosphopeptide Enrichment

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Hydroxyapatite affinity chromatography for the highly selective enrichment of mono‐ and multi‐phosphorylated peptides in phosphoproteome analysis

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Chip-Based Enrichment and NanoLC−MS/MS Analysis of Phosphopeptides from Whole Lysates

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Phosphoproteome analysis of mouse liver using immobilized metal affinity purification and linear ion trap mass spectrometry

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Comparative Phosphoproteomics of Zebrafish Fyn/Yes Morpholino Knockdown Embryos

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Quantification of Gel-separated Proteins and Their Phosphorylation Sites by LC-MS Using Unlabeled Internal Standards

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Open Tubular Immobilized Metal Ion Affinity Chromatography Combined with MALDI MS and MS/MS for Identification of Protein Phosphorylation Sites

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Label-Free Quantitation of Phosphopeptide Changes During Rat Sperm Capacitation

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Gas-Phase Rearrangements Do Not Affect Site Localization Reliability in Phosphoproteomics Data Sets

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Comparative Assessment of Site Assignments in CID and Electron Transfer Dissociation Spectra of Phosphopeptides Discloses Limited Relocation of Phosphate Groups

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A Strategy for the Rapid Identification of Phosphorylation Sites in the Phosphoproteome

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Quantitative Phosphoproteomic Analysis of T Cell Receptor Signaling in Diabetes Prone and Resistant Mice

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Phosphorus-Based Absolutely Quantified Standard Peptides for Quantitative Proteomics

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Recombinant Isotope Labeled and Selenium Quantified Proteins for Absolute Protein Quantification

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A new acid mix enhances phosphopeptide enrichment on titanium- and zirconium dioxide for mapping of phosphorylation sites on protein complexes

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Isolation of Phosphopeptides by pI-Difference-Based Electrophoresis

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Phosphopeptide enrichment by IEF

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Ethylenediaminetetraacetic Acid Increases Identification Rate of Phosphoproteomics in Real Biological Samples

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Quantitative Phosphoproteome Analysis of Lysophosphatidic Acid Induced Chemotaxis Applying Dual-Step 18O Labeling Coupled with Immobilized Metal-Ion Affinity Chromatography

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Universal and Confident Phosphorylation Site Localization Using phosphoRS

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The next level of complexity: Crosstalk of posttranslational modifications

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Unambiguous Phosphosite Localization using Electron-Transfer/Higher-Energy Collision Dissociation (EThcD)

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Evaluation and Optimization of Mass Spectrometric Settings during Data-dependent Acquisition Mode: Focus on LTQ-Orbitrap Mass Analyzers

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Fluxomics – connecting ‘omics analysis and phenotypes

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Phosphorylation

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Recent developments in mass spectrometry-based quantitative phosphoproteomicsThis paper is one of a selection of papers published in this Special Issue, entitled CSBMCB — Systems and Chemical Biology, and has undergone the Journal's usual peer review process.

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