Cited by 61

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Targeted Transcriptional Repression in Bacteria Using CRISPR Interference (CRISPRi)

Hawkins, John S., Wong, Spencer, Peters, Jason M., Almeida, Ricardo, Qi, Lei S.·2015·Methods in Molecular Biology

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  1. Barrangou R, Fremaux C, Deveau H, Richards M, Boyaval P, Moineau S, Romero DA, Horvath P (2007) CRISPR provides acquired resistance against viruses in prokaryotes. Science 315:1709–1712 · DOI · Paper page
  2. Wiedenheft B, Lander GC, Zhou K, Jore MM, Brouns SJ, van der Oost J, Doudna JA, Nogales E (2011) Structures of the RNA-guided surveillance complex from a bacterial immune system. Nature 477:486–489 · DOI
  3. Brouns SJJ, Jore MM, Lundgren M, Westra ER, Slijkhuis RJH, Snijders APL, Dickman MJ, Makarova KS, Koonin EV, van der Oost J (2008) Small CRISPR RNAs guide antiviral defense in prokaryotes. Science 321:960–964 · DOI · Paper page
  4. Jinek M, Chylinski K, Fonfara I, Hauer M, Doudna JA, Charpentier E (2012) A programmable dual-RNA–guided DNA endonuclease in adaptive bacterial immunity. Science 337:816–821 · DOI · Paper page
  5. Mali P, Yang L, Esvelt KM, Aach J, Guell M, DiCarlo JE, Norville JE, Church GM (2013) RNA-guided human genome engineering via Cas9. Science 339:823–826 · DOI · Paper page
  6. Cong L, Ran FA, Cox D, Lin S, Barretto R, Habib N, Hsu PD, Wu X, Jiang W, Marraffini LA, Zhang F (2013) Multiplex genome engineering using CRISPR/Cas systems. Science 339:819–823 · DOI · Paper page
  7. Huang S-H (1994) Inverse polymerase chain reaction. Mol Biotechnol 2:15–22 · DOI
  8. Quan J, Tian J (2011) Circular polymerase extension cloning for high-throughput cloning of complex and combinatorial DNA libraries. Nat Protoc 6:242–251 · DOI
  9. Engler C, Gruetzner R, Kandzia R, Marillonnet S (2009) Golden Gate shuffling: a one-pot DNA Shuffling method based on type IIs restriction enzymes. PLoS One 4:e5553 · DOI
  10. Campbell RE, Tour O, Palmer AE, Steinbach PA, Baird GS, Zacharias DA, Tsien RY (2002) A monomeric red fluorescent protein. Proc Natl Acad Sci U S A 99:7877–7882 · DOI
  11. Deveau H, Barrangou R, Garneau JE, Labonté J, Fremaux C, Boyaval P, Romero DA, Horvath P, Moineau S (2008) Phage Response to CRISPR-Encoded Resistance in Streptococcus thermophilus. J Bacteriol 190:1390–1400 · DOI
  12. Garneau JE, Dupuis MÈ, Villion M, Romero DA, Barrangou R, Boyaval P, Fremaux C, Horvath P, Magadán AH, Moineau S (2010) The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA. Nature 468:67–71 · DOI
  13. Mojica FJ, Díez-Villaseñor C, García-Martínez J, Almendros C (2009) Short motif sequences determine the targets of the prokaryotic CRISPR defence system. Microbiology 155:733–740 · DOI · Paper page
  14. Shah SA, Erdmann S, Mojica FJ, Garrett RA (2013) Protospacer recognition motifs: mixed identities and functional diversity. RNA Biol 10:891–899 · DOI · Paper page
  15. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410 · DOI · Paper page
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  17. Gruber AR, Lorenz R, Bernhart SH, Neuböck R, Hofacker IL (2008) The Vienna RNA websuite. Nucleic Acids Res 36:W70–W74 · DOI
  18. Ochman H, Gerber AS, Hartl DL (1988) Genetic applications of an inverse polymerase chain reaction. Genetics 120:621–623 · DOI
  19. Rozen S, Skaletsky H (2000) Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 132:365–386
  20. Clifford AA (1973) Multivariate error analysis: a handbook of error propagation and calculation in many-parameter systems. Wiley, New York. ISBN 0470160551

Cited by

Metadata

Authors
Hawkins, J. S., Wong, S., Peters, J. M., Almeida, R., & Qi, L. S.
Venue
Methods in Molecular Biology
Published
2015
Pages
349-362
ISSN
  • 1064-3745
  • 1940-6029
Cited by
61
References
3
Language
en

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