Osteosarcoma neutrophil extracellular trap network-associated gene recurrence and metastasis model
Open accessAbstract
Osteosarcoma (OS) is the most common malignancy in children and adolescents and has a high probability of recurrence and metastasis. A growing number of studies have shown that neutrophil extracellular traps (NETs) are strongly associated with cancer metastasis, but in osteosarcoma, genes associated with NETs that promote osteosarcoma recurrence and metastasis remain to be explored. We systematically investigated the gene expression patterns of NETs in OS samples from the GEO database. NETs molecular typing was evaluated based on NETs expression profiles, and the association between NETs molecular subtypes and immune microenvironment and metastatic features were explored. Ultimately, we constructed a signature model and column line graph associated with metastasis prediction and screened possible potential drugs for metastatic osteosarcoma. We established two different molecular subtypes of NETs, which showed significant differences in metastatic status, metastasis time, tumor immune microenvironment, and biological effects. We also constructed a NETs-related gene metastasis signature(NRGMS) to assess the expression pattern of NETs in patients to predict metastatic recurrence in osteosarcoma patients. We screened for TOMM40 and FH associated with metastatic recurrence in osteosarcoma patients. Overall, this study constructs a predictive model for osteosarcoma metastasis of NETs-related genes, which is expected to provide new insights into the metastasis of osteosarcoma.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In osteosarcoma, a signature derived from NETs is associated with tumor recurrence and metastasis, and can predict patient prognosis.
“In osteosarcoma, a signature derived from NETs is associated with tumor recurrence and metastasis, and can predict patient prognosis [41, 42].”
From Advances on immunotherapy for osteosarcoma (2024) · cites this paper as [42]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Robust enumeration of cell subsets from tissue expression profiles
Newman, A. M., Liu, C. L., Green, M. R., Gentles, A. J., Feng, W., Xu, Y., Hoang, C. D., Diehn, M., & Alizadeh, A. A. (2015) · Nature Methods · doi:10.1038/nmeth.3337 · Cited by 12,116 · see citing works
Neutrophil Extracellular Traps Kill Bacteria
Brinkmann, V., Reichard, U., Goosmann, C., Fauler, B., Uhlemann, Y., Weiss, D. S., Weinrauch, Y., & Zychlinsky, A. (2004) · Science · doi:10.1126/science.1092385 · Cited by 10,268 · see citing works
Inferring tumour purity and stromal and immune cell admixture from expression data
Yoshihara, K., Shahmoradgoli, M., Martínez, E., Vegesna, R., Kim, H., Torres-Garcia, W., Treviño, V., Shen, H., Laird, P. W., Levine, D. A., et al. (2013) · Nature Communications · doi:10.1038/ncomms3612 · Cited by 9,778 · see citing works
Leek, J. T., Johnson, W. E., Parker, H. S., Jaffe, A. E., & Storey, J. D. (2012) · Bioinformatics · doi:10.1093/bioinformatics/bts034 · Cited by 6,231 · see citing works
limma: Linear Models for Microarray Data
Smyth, G. K. (2005) · Statistics for Biology and Health · doi:10.1007/0-387-29362-0_23 · Cited by 5,796 · see citing works
ConsensusClusterPlus: a class discovery tool with confidence assessments and item tracking
Wilkerson, M. D., & Hayes, D. N. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btq170 · Cited by 5,719 · see citing works
How To Build and Interpret a Nomogram for Cancer Prognosis
Iasonos, A. E., Schrag, D., Raj, G. V., & Panageas, K. S. (2008) · Journal of Clinical Oncology · doi:10.1200/jco.2007.12.9791 · Cited by 3,238 · see citing works
Geeleher, P., Cox, N. J., & Huang, R. S. (2014) · PLoS ONE · doi:10.1371/journal.pone.0107468 · Cited by 2,444 · see citing works
What is principal component analysis?
Ringnér, M. (2008) · Nature Biotechnology · doi:10.1038/nbt0308-303 · Cited by 2,407 · see citing works
Transforming p21 Mutants and c-Ets-2 Activate the Cyclin D1 Promoter through Distinguishable Regions
Albanese, C., Johnson, J., Watanabe, G., Eklund, N., Vu, D., Arnold, A., & Pestell, R. G. (1995) · Journal of Biological Chemistry · doi:10.1074/jbc.270.40.23589 · Cited by 802 · see citing works
Teijeira, Á., Garasa, S., Gato, M., Alfaro, C., Miguéliz, I., Cirella, A., de Andrea, C., Ochoa, M. C., Otano, I., Etxeberría, I., et al. (2020) · Immunity · doi:10.1016/j.immuni.2020.03.001 · Cited by 799 · see citing works
Current and future therapeutic approaches for osteosarcoma
Harrison, D. J., Geller, D. S., Gill, J. B., Lewis, V. O., & Gorlick, R. G. (2017) · Expert Review of Anticancer Therapy · doi:10.1080/14737140.2018.1413939 · Cited by 688 · see citing works
The Emerging Role of Neutrophil Extracellular Traps (NETs) in Tumor Progression and Metastasis
Masucci, M. T., Minopoli, M., Vecchio, S. D., & Carriero, M. V. (2020) · Frontiers in Immunology · doi:10.3389/fimmu.2020.01749 · Cited by 532 · see citing works
Osteosarcoma, Chondrosarcoma, and Chordoma
Whelan, J. S., & Davis, L. E. (2017) · Journal of Clinical Oncology · doi:10.1200/jco.2017.75.1743 · Cited by 477 · see citing works
The Myc oncoprotein: a critical evaluation of transactivation and target gene regulation
Cole, M. D., & McMahon, S. B. (1999) · Oncogene · doi:10.1038/sj.onc.1202748 · Cited by 314 · see citing works
Neutrophil Extracellular Traps Drive Mitochondrial Homeostasis in Tumors to Augment Growth
Yazdani, H. O., Roy, E., Comerci, A. J., van der Windt, D. J., Zhang, H., Huang, H., Loughran, P., Shiva, S., Geller, D. A., Bartlett, D. L., et al. (2019) · Cancer Research · doi:10.1158/0008-5472.can-19-0800 · Cited by 277 · see citing works
Neutrophil Extracellular Traps (NETs) in Cancer Invasion, Evasion and Metastasis
Demkow, U. A. (2021) · Cancers · doi:10.3390/cancers13174495 · Cited by 261 · see citing works
The E2F transcription factors: key regulators of cell proliferation
Müller, H., & Helin, K. (2000) · Biochimica et Biophysica Acta (BBA) - Reviews on Cancer · doi:10.1016/s0304-419x(99)00030-x · Cited by 259 · see citing works
Huang, K., Chen, Y., Zhang, R., Wu, Y., Ma, Y., Fang, X., & Shen, S. (2018) · Cell Death and Disease · doi:10.1038/s41419-017-0166-5 · Cited by 234 · see citing works
Best Subset, Forward Stepwise or Lasso? Analysis and Recommendations Based on Extensive Comparisons
Hastie, T. J., Tibshirani, R. J., & Tibshirani, R. J. (2020) · Statistical Science · doi:10.1214/19-sts733 · Cited by 198 · see citing works
Tumor-Induced NETosis as a Risk Factor for Metastasis and Organ Failure
Cedervall, J., Zhang, Y., & Olsson, A.-K. (2016) · Cancer Research · doi:10.1158/0008-5472.can-15-3051 · Cited by 146 · see citing works
Pourebrahim, R., Zhang, Y., Liu, B., Gao, R., Xiong, S., Lin, P. P., McArthur, M. J., Ostrowski, M. C., & Lozano, G. (2017) · Genes & Development · doi:10.1101/gad.304972.117 · Cited by 62 · see citing works
Zhang, W., Mendoza, M. C., Pei, X., Ilter, D., Mahoney, S. J., Zhang, Y., Ma, D., Blenis, J., & Wang, Y. (2012) · Journal of Biological Chemistry · doi:10.1074/jbc.m111.258236 · Cited by 57 · see citing works
Neutrophils Create an ImpeNETrable Shield between Tumor and Cytotoxic Immune Cells
Ireland, A. S., & Oliver, T. G. (2020) · Immunity · doi:10.1016/j.immuni.2020.04.009 · Cited by 56 · see citing works
The biological foundation of the genetic association of TOMM40 with late-onset Alzheimer's disease
Zeitlow, K., Charlambous, L., Ng, I., Gagrani, S., Mihovilovic, M., Luo, S., Rock, D. L., Saunders, A. M., Roses, A. D., & Gottschalk, W. K. (2017) · Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease · doi:10.1016/j.bbadis.2017.07.031 · Cited by 54 · see citing works
Aberrant expression of ETS1 and ETS2 proteins in cancer
Fry, E. A., & Inoue, K. (2018) · Cancer Reports and Reviews · doi:10.15761/crr.1000151 · Cited by 52 · see citing works
PET CT in the diagnosis and prognosis of osteosarcoma
Guan, Z. (2018) · Frontiers in bioscience · doi:10.2741/4696 · Cited by 47 · see citing works
Lee, E.-G., Chen, S., Leong, L., Tulloch, J., & Yu, C. (2021) · Genes · doi:10.3390/genes12060871 · Cited by 41 · see citing works
Liu, Y., Qiu, G., Luo, Y., Li, S., Xu, Y., Zhang, Y., Hu, J., Li, P., Pan, H., & Wang, Y. (2022) · Experimental & Molecular Medicine · doi:10.1038/s12276-022-00806-z · Cited by 41 · see citing works
Combining preclinical tools and models to unravel tumor complexity: Jump into the next dimension
Miserocchi, G., Bocchini, M., Cortesi, M., Arienti, C., Vita, A. D., Liverani, C., Mercatali, L., Bravaccini, S., Ulivi, P., & Zanoni, M. (2023) · Frontiers in Immunology · doi:10.3389/fimmu.2023.1171141 · Cited by 35 · see citing works
TOMM40 genetic variants associated with healthy aging and longevity: a systematic review
Chen, S., Sarasua, S. M., Davis, N. J., DeLuca, J. M., Boccuto, L., Thielke, S. M., & Yu, C. (2022) · BMC Geriatrics · doi:10.1186/s12877-022-03337-4 · Cited by 33 · see citing works
Tippett, V. L., Tattersall, L., Latif, N. A., Shah, K. M., Lawson, M. A., & Gartland, A. (2022) · Oncogene · doi:10.1038/s41388-022-02529-x · Cited by 33 · see citing works
Jia, Y., Liu, Y., Han, Z., & Tian, R. (2021) · PeerJ · doi:10.7717/peerj.11496 · Cited by 28 · see citing works
The novel circ_0028171/miR-218-5p/IKBKB axis promotes osteosarcoma cancer progression
Pan, F., Zhang, J., Tang, B., Li, J., Qiu, B. Q., & Zha, Z. (2020) · Cancer Cell International · doi:10.1186/s12935-020-01562-8 · Cited by 26 · see citing works
Xu, F., Yan, J., Peng, Z., Liu, J., & Li, Z. (2022) · Frontiers in Immunology · doi:10.3389/fimmu.2022.1096009 · Cited by 22 · see citing works
Somarelli, J. A., Rupprecht, G., Altunel, E., Flamant, E. M., Rao, S. R., Sivaraj, D., Lazarides, A. L., Hoskinson, S. M., Sheth, M. U., Cheng, S., et al. (2020) · Cancers · doi:10.3390/cancers12113335 · Cited by 19 · see citing works
Downregulated CMTM2 Poses Potential Clinical Significance in Hepatocellular Carcinoma
Guo, X., Zhang, S., Tan, S., Bei, C., Zhang, H., Zhu, X., & Qiu, X. (2020) · DNA and Cell Biology · doi:10.1089/dna.2019.5237 · Cited by 19 · see citing works
Han, Y. J., Zhang, J., Hardeman, A., Liu, M., Karginova, O. A., Romero, R., Khramtsova, G. F., Zheng, Y., Huo, D., & Olopade, O. I. (2022) · Human Molecular Genetics · doi:10.1093/hmg/ddac168 · Cited by 15 · see citing works
Long, H., Lei, P., & Hu, Y. (2022) · Scientific Reports · doi:10.1038/s41598-022-20217-4 · Cited by 11 · see citing works
Alandejani, S. A., Malaczynska, J., Bluth, M. J., Das, B., & Norin, A. J. (2022) · Human Immunology · doi:10.1016/j.humimm.2022.03.003 · Cited by 4 · see citing works
Human CMTM2/CKLFSF2 enhances the ligand-induced transactivation of the androgen receptor
Liu, D., Yin, C., Zhang, Y., Tian, L., Li, T., Li, D., Ma, D., Guo, Y., & Wang, Y. (2009) · 中国科学通报:英文版 · doi:10.1007/s11434-009-0092-8 · Cited by 3 · see citing works
Flagged first, then by citations
Research works printed but not linked: 1
- Kamihara J, Schultz KA, Rana HQJG: FH tumor predisposition syndrome. 2020. 20301430
Cited by
Sorted by citations
Advances on immunotherapy for osteosarcoma
Yu, S., & Yao, X. (2024) · Molecular Cancer · doi:10.1186/s12943-024-02105-9 · Cited by 270 · see citing works
Osteosarcoma immune microenvironment: cellular struggle and novel therapeutic insights
Zhang, Y., Jiang, S., Lv, J., Feng, W., Yu, Y., & Zhao, H. (2025) · Frontiers in Immunology · doi:10.3389/fimmu.2025.1584450 · Cited by 22 · see citing works
Identification of the shared gene signatures in retinoblastoma and osteosarcoma by machine learning
Ye, R., Yuan, Q., You, W., Huang, Y., Lin, Z., Tang, H., & Zeng, R. (2024) · Scientific Reports · doi:10.1038/s41598-024-82789-7 · Cited by 16 · see citing works
Self-citationThe role of neutrophils in osteosarcoma: insights from laboratory to clinic
Xia, M. X., Han, Y., Sun, L., Li, D., Zhu, C., & Li, D. (2024) · Frontiers in Immunology · doi:10.3389/fimmu.2024.1490712 · Cited by 9 · see citing works
Zhang, S., Xing, Z., & Ke, J. (2024) · Journal of bone oncology · doi:10.1016/j.jbo.2024.100655 · Cited by 7 · see citing works
Xu, J., Shi, Q., Zeng, F., Ren, T., Wei, R., & Tang, X. (2025) · Frontiers in Immunology · doi:10.3389/fimmu.2025.1647913 · Cited by 3 · see citing works
Li, H., Liu, C., Zhang, B., Zhang, Y., & Liu, Y. (2026) · Journal of Cancer Research and Clinical Oncology · doi:10.1007/s00432-026-06471-3 · Cited by 2 · see citing works
Chu, D., Huang, R., Shi, J., Xu, R., & Wei, D. (2025) · Frontiers in Oncology · doi:10.3389/fonc.2025.1551074 · Cited by 2 · see citing works
Gao, Q., Ma, Y., Shao, T., Tao, X., Yang, X., Li, S., Gu, J., & Yu, Z. (2024) · Journal of Inflammation Research · doi:10.2147/jir.s472118 · Cited by 1 · see citing works
A comprehensive analysis of ferroptosis-related metastasis genes in osteosarcoma
Da, L., Chen, X., Zhao, P., Yang, Y., & Gao, S. (2026) · Discover Oncology · doi:10.1007/s12672-026-05003-2
Feng, W., Xu, Z., Yan, Z., Wu, H., Guo, H., Luo, Y., & Liu, W. T. (2026) · Journal of bone oncology · doi:10.1016/j.jbo.2026.100764
Xu, C., Huo, C., & Wang, L. (2026) · Frontiers in Oncology · doi:10.3389/fonc.2026.1787445
Metabolic–immune crosstalk in osteosarcoma: mechanisms and therapeutic opportunities
Wan, X., He, W., He, B., & Chen, L. (2026) · Frontiers in Immunology · doi:10.3389/fimmu.2026.1818745
Yan, M., Chen, C., Xu, J., & Cui, X. (2026) · Letters in Drug Design & Discovery · doi:10.1016/j.lddd.2026.100582
- Authors
- Tang, H., Xie, J., Du, Y.-X., Tan, Z.-J., & Liang, Z.-T.
- Affiliations
- Central South University (CN)
- Corresponding author
- Liang, Zhuo-Tao
- ORCID
- Venue
- Journal of Cancer Research and Clinical Oncology
- Published
- 2024-01-29
- Volume
- 150
- Issue
- 2
- Pages
- 48-48
- ISSN
- 0084-5353 (ISSN-L)
- 1432-1335
- PMC
- PMC10824883
- OpenAlex
- W4391305176
- Cited by
- 14
- References
- 41
- Citations by year
- 2026: 6 · 2025: 3 · 2024: 5
- FWCI
- 4.07
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- Journal of Cancer Research and Clinical Oncology (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Funders
- Fundamental Research Funds for the Central Universities of Central South University.
- Topics
- Health Sciences › Medicine › Pulmonary and Respiratory Medicine › Sarcoma Diagnosis and Treatment
- Life Sciences › Immunology and Microbiology › Immunology › Neutrophil, Myeloperoxidase and Oxidative Mechanisms
- Health Sciences › Medicine › Oncology › Cancer Immunotherapy and Biomarkers
- Keywords
- osteosarcoma, neutrophil extracellular traps, tumor recurrence, metastasis prediction, tumor immune microenvironment, molecular subtypes, TOMM40, familial hypercholesterolemia, drug screening, pediatric bone cancer
- MeSH terms
- Adolescent, Bone Neoplasms, Child, Humans, Osteosarcoma, Databases, Factual, Neoplasms, Second Primary, Tumor Microenvironment, Extracellular Traps
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review