Student or educator? Sign up with your school email and get 6 months of Pro free.
Cited by 20

The DOI matches its Crossref record; 9 of the 9 references it cites were found in a registry or an index.

Genetic differentiation between upland and lowland populations shapes the Y-chromosomal landscape of West Asia

The Genographic Consortium, Balanovsky, O., Chukhryaeva, M., Zaporozhchenko, V., Urasin, V., Zhabagin, M., Hovhannisyan, A., Agdzhoyan, A., Dibirova, K., Kuznetsova, M., Koshel, S., Pocheshkhova, E., Alborova, I., Skhalyakho, R., Utevska, O., Mustafin, Kh., Yepiskoposyan, L., Tyler-Smith, C., Balanovska, E.·2017·Human Genetics

Abstract

Y-chromosomal variation in West Asian populations has so far been studied in less detail than in the neighboring Europe. Here, we analyzed 598 Y-chromosomes from two West Asian subregions-Transcaucasia and the Armenian plateau-using 40 Y-SNPs and 17 Y-STRs and combined them with previously published data from the region. The West Asian populations fell into two clusters: upland populations from the Anatolian, Armenian and Iranian plateaus, and lowland populations from the Levant, Mesopotamia and the Arabian Peninsula. This geographic subdivision corresponds with the linguistic difference between Indo-European and Turkic speakers, on the one hand, and Semitic speakers, on the other. This subdivision could be traced back to the Neolithic epoch, when upland populations from the Anatolian and Iranian plateaus carried similar haplogroup spectra but did not overlap with lowland populations from the Levant. We also found that the initial gene pool of the Armenian motherland population has been well preserved in most groups of the Armenian Diaspora. In view of the contribution of West Asians to the autosomal gene pool of the steppe Yamnaya archaeological culture, we sequenced a large portion of the Y-chromosome in haplogroup R1b samples from present-day East European steppe populations. The ancient Yamnaya samples are located on the "eastern" R-GG400 branch of haplogroup R1b-L23, showing that the paternal descendants of the Yamnaya still live in the Pontic steppe and that the ancient…

Overview

Integrity signals

Registry

Crossref · 10.1007/s00439-017-1770-2

Cites

9 of 9 references verified0 citation errors · 0 not checkable

Statistics

Recomputing p-values needs the paper’s full text.

Verification

Claims the paper makes

This paper’s full text isn’t openly available, so its claims and self-check weren’t run. The registry and citation checks still apply.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Citations

Cites

Research works printed but not linked: 56

  1. Abu-Amero KK, Hellani A, González AM, Larruga JM, Cabrera VM, Underhill PA (2009) Saudi Arabian Y-Chromosome diversity and its relationship with nearby regions. BMC Genet 10:59. doi: 10.1186/1471-2156-10-59 · DOI · Paper page
  2. Balanovskaia EV, Nurbaev SD, Balanovskiĭ OP, Pocheshkhova EA, Borovinskikh AA, Ginter EK (1999) Genogeographic analysis of subdivided population. The Adyge gene pool in the Caucasian gene pool system. Russian J Genet 35(6):818–830
  3. Balanovsky O, Rootsi S, Pshenichnov A et al (2008) Two sources of the Russian patrilineal heritage in their Eurasian context. Am J Hum Genet 82(1):236–250. doi: 10.1016/j.ajhg.2007.09.019 · DOI
  4. Balanovsky O, Dibirova K, Dybo A et al (2011) Parallel evolution of genes and languages in the caucasus region. Mol Biol Evol 28(10):2905–2920. doi: 10.1093/molbev/msr126 · DOI
  5. Balanovsky O, Zhabagin M, Agdzhoyan A et al (2015) Deep phylogenetic analysis of haplogroup G1 provides estimates of SNP and STR mutation rates on the human Y-chromosome and reveals migrations of iranic speakers. PLoS One 10(4):e0122968. doi: 10.1371/journal.pone.0122968 · DOI · Paper page
  6. Balaresque P, Bowden GR, Adams SM, Leung HY, King TE, Rosser ZH, Goodwin J, Moisan JP, Richard C, Millward A, Demaine AG, Barbujani G, Previderè C, Wilson IJ, Tyler-Smith C, Jobling MA (2010) A predominantly neolithic origin for European paternal lineages. PLoS Biol 19 8(1):e1000285. doi: 10.1371/journal.pbio.1000285 · DOI · Paper page
  7. Batini C, Hallast P, Zadik D et al (2015) Large-scale recent expansion of European patrilineages shown by population resequencing. Nature Commun 6:7152. doi: 10.1038/ncomms8152 · DOI · Paper page
  8. Bergstrӧm et al (2016) Deep roots for aboriginal australian Y chromosomes. Current Biology. http://dx.doi.org/ 10.1016/j.cub.2016.01.028 · DOI
  9. Battaglia V, Fornarino S, Al-Zahery N et al (2009) Y-chromosomal evidence of the cultural diffusion of agriculture in southeast Europe. Eur J Hum Genet 17(6):820–830. doi: 10.1038/ejhg.2008.249 · DOI
  10. Bouckaert R, Lemey P, Dunn M et al (2012) Mapping the origins and expansion of the Indo-European language family. Science (New York, NY) 337(6097):957–960. doi: 10.1126/science.1219669 · DOI
  11. Cadenas AM, Zhivotovsky LA, Cavalli-Sforza LL, Underhill PA, Herrera RJ (2008) Y-chromosome diversity characterizes the Gulf of Oman. Eur j hum genet 16(3):374–386. doi: 10.1038/sj.ejhg.5201934 · DOI
  12. Cavalli-Sforza LL, Piazza A, Menozzi P, Mountain J (1988) Reconstruction of human evolution: bringing together genetic, archaeological, and linguistic data. Proc Natl Acad Sci USA 85(16):6002–6006 · DOI
  13. Cinnioglu C, King R, Kivisild T, Kalfoglu E, Atasoy S, Cavalleri GL et al (2004) Excavating Y-chromosome haplotype strata in Anatolia. Hum Genet 114(2):127–148 · DOI · Paper page
  14. Devoto G (1962) Origini indeuropee. Sansoni, Florence, p 250
  15. Di Cristofaro J, Pennarun E, Mazières S et al (2013) Afghan Hindu Kush: where Eurasian sub-continent gene flows converge. PLoS One 8(10):e76748. doi: 10.1371/journal.pone.0076748 · DOI · Paper page
  16. El-Sibai M, Platt DE, Haber M et al (2009) Geographical structure of the Y-chromosomal genetic landscape of the Levant: a coastal-inland contrast. Ann Hum Genet 73(Pt 6):568–581. doi: 10.1111/j.1469-1809.2009.00538.x · DOI
  17. Flores C, Maca-Meyer N, Larruga JM, Cabrera VM, Karadsheh N, Gonzalez AM (2005) Isolates in a corridor of migrations: a high-resolution analysis of Y-chromosome variation in Jordan. J Hum Genet 50(9):435–441. doi: 10.1038/sj.ejhg.5201225 · DOI
  18. Forster P, Harding R, Torroni A, Bandelt HJ (1996) Origin and evolution of native American mtDNA variation: a reappraisal. Am J Hum Genet 59(4):935–945
  19. Gamkrelidze TM, Ivanov VVS (1995) Indo-European and the Indo-Europeans: a reconstruction and historical analysis of a proto-language and a proto-culture, 2nd edn. In: Trends in linguistics: studies and monographs, vol 80 · DOI
  20. Ge J, Budowle B, Aranda XG, Planz JV, Eisenberg AJ, Chakraborty R (2009) Mutation rates at Y chromosome short tandem repeats in Texas populations. Forensic sci int Genet 3(3):179–184. doi: 10.1016/j.fsigen.2009.01.007 · DOI
  21. Goedbloed M, Vermeulen M, Fang RN et al (2009) Comprehensive mutation analysis of 17 Y-chromosomal short tandem repeat polymorphisms included in the AmpFlSTR® Yfiler® PCR amplification kit. Int J Legal Med 123(6):471–482. doi: 10.1007/s00414-009-0342-y · DOI
  22. Grugni V, Battaglia V, Hooshiar Kashani B et al (2012) Ancient migratory events in the middle East: new clues from the Y-chromosome variation of modern Iranians. PLoS One 7(7):e41252. doi: 10.1371/journal.pone.0041252 · DOI
  23. Gusmao L, Sanchez-Diz P, Calafell F, Martin P, Alonso CA, Alvarez-Fernandez F et al (2005) Mutation rates at Y chromosome specific microsatellites. Hum Mutat 26(6):520–528. doi: 10.1002/humu.20254 · DOI
  24. Haber M, Platt DE, Badro DA et al (2011) Influences of history, geography, and religion on genetic structure: the Maronites in Lebanon. Eur J Hum Genet 19(3):334–340. doi: 10.1038/ejhg.2010.177 · DOI · Paper page
  25. Haber M, Mezzavilla M, Xue Y, Comas D et al (2016) Genetic evidence for an origin of the Armenians from Bronze Age mixing of multiple populations. Eur J Hum Genet 24:931–936. doi: 10.1038/ejhg.2015.206 · DOI
  26. Hallast P, Batini C, Zadik D et al (2015) The Y-Chromosome tree bursts into leaf: 13,000 high-confidence SNPs covering the majority of known clades. Mol Biol Evol 32(3):661–673. doi: 10.1093/molbev/msu327 · DOI
  27. Herrera KJ, Lowery RK, Hadden L et al (2012) Neolithic patrilineal signals indicate that the Armenian plateau was repopulated by agriculturalists. Eur J Hum Genet 20(3):313–320. doi: 10.1038/ejhg.2011.192 · DOI
  28. Hovannisian RG (ed) (1997) The Armenian people. St Martin’s, New York
  29. Hovhannisyan A, Khachatryan Z, Haber M et al (2014) Different waves and directions of Neolithic migrations in the Armenian Highland. Investiga Genet 5:15. doi: 10.1186/s13323-014-0015-6 · DOI
  30. Karafet TM, Bulayeva KB, Nichols J, Bulayev OA, Gurgenova F, Omarova J, Yepiskoposyan L, Savina OV, Rodrigue BH, Hammer MF (2016) Coevolution of genes and languages and high levels of population structure among the highland populations of Daghestan. J Hum Genet 61(3):181–191 · DOI
  31. Kitchen A, Ehret C, Assefa S, Mulligan CJ (2009) Bayesian phylogenetic analysis of semitic languages identifies an early Bronze Age origin of semitic in the near East. Proc Royal Soc B 276(1668):2703–2710. doi: 10.1098/rspb.2009.0408 · DOI
  32. Koshel SM (2012) Geoinformation technologies in genogeography. In: Lure IK, Kravtsova VI (eds) Modern geographic cartography. Data + p, Moscow, pp 158–166 (In Russian)
  33. Lowery R, Herrera K, Uribe G, Reguiero M, Herrera RJ (2013) Sub-population structure evident in forensic Y-STR profiles from Armenian geographical groups. Leg Med (Tokyo) 15(2):85–90. doi: 10.1016/j.legalmed.2012.10.003 · DOI
  34. Myres NM, Rootsi S, Lin AA et al (2011) A major Y-chromosome haplogroup R1b holocene era founder effect in central and Western Europe. Eur J Hum Genet 19(1):95–101. doi: 10.1038/ejhg.2010.146 · DOI · Paper page
  35. Nasidze I, Sarkisian T, Kerimov A, Stoneking M (2003) Testing hypotheses of language replacement in the Caucasus: evidence from the Y-chromosome. Hum Genet 112(3):255–261 · DOI
  36. Nei M (1975) Molecular population genetics and evolution. North-Holland Pub. Co, Amsterdam
  37. Quintana-Murci L, Veitia R, Fellous M, Semino O, Poloni ES (2003) Genetic structure of Mediterranean populations revealed by Y-chromosome haplotype analysis. Am J Phys Anthropol 121(2):157–171. doi: 10.1002/ajpa.10187 · DOI
  38. Ravid-Amir O, Rosset S (2010) Maximum likelihood estimation of locus-specific mutation rates in Y-chromosome short tandem repeats. Bioinformatics 26(18):i440–i445. doi: 10.1093/bioinformatics/btq367 · DOI
  39. Renfrew C (1987) Archaeology and language: the puzzle of the Indo-European Origins. Jonathan Cape, London
  40. Rootsi S, Behar DM, Järve M et al (2013) Phylogenetic applications of whole Y-chromosome sequences and the Near Eastern origin of Ashkenazi Levites. Nature Commun 4:2928. doi: 10.1038/ncomms3928 · DOI
  41. Rosser ZH, Zerjal T, Hurles ME et al (2000) Y-Chromosomal diversity in Europe is clinal and influenced primarily by geography, rather than by language. Am J Hum Genet 67(6):1526–1543 · DOI · Paper page
  42. Ruhlen M (1987) A guide to the world’s languages. vol I: classification. Stanford University Press, Stanford, p 463 · DOI
  43. Saillard J, Forster P, Lynnerup N, Bandelt H-J, Nørby S (2000) mtDNA variation among Greenland Eskimos: the edge of the Beringian expansion. Am J Hum Genet 67(3):718–726 · DOI · Paper page
  44. Sanchez JJ, Hallenberg C, Borsting C, Hernandez A, Morling N (2005) High frequencies of Y chromosome lineages characterized by E3b1, DYS19-11, DYS392-12 in Somali males. Eur J Hum Genet 13(7):856–866. doi: 10.1038/sj.ejhg.5201390 · DOI
  45. Sanchez-Diz P, Alves C, Carvalho E, Carvalho M, Espinheira R, Garcia O et al (2008) Population and segregation data on 17 Y-STRs: results of a GEP-ISFG collaborative study. Int J Legal Med 122(6):529–533. doi: 10.1007/s00414-008-0265-z · DOI
  46. Semino O, Passarino G, Oefner PJ et al (2000) The genetic legacy of Paleolithic Homo sapiens sapiens in extant Europeans: a Y chromosome perspective. Science 290:1155–1159. doi: 10.1126/science.290.5494.1155 · DOI
  47. Simonian H (ed) (2007) The Hemshin. History, society and identity in the Highlands of Northeast Turkey, New York: Routledge, p 472
  48. Tarkhnishvili D, Gavashelishvili A, Murtskhvaladze M, Gabelaia M, Tevzadze G (2014) Human paternal lineages, languages, and environment in the Caucasus. Hum Biol 86(2):113–130. doi: 10.3378/027.086.0205 · DOI
  49. Tololyan K (2001) Armenian diaspora. Diaspora 9(1):107–136 · DOI
  50. Torlakian BG (1981) Ethnography of Hamshen Armenians. Ethnography and Folklore. vol. 13. Yerevan. pp. 24–111 (In Armenian)
  51. Underhill PA, Myres NM, Rootsi S et al (2010) Separating the post-glacial coancestry of European and Asian Y chromosomes within haplogroup R1a. Eur J Hum Genet 18(4):479–484. doi: 10.1038/ejhg.2009.194 · DOI · Paper page
  52. Voskarides K, Mazières S, Hadjipanagi D et al (2016) Y-chromosome phylogeographic analysis of the Greek-Cypriot population reveals elements consistent with Neolithic and Bronze Age settlements. Investig Genet 7:1. doi: 10.1186/s13323-016-0032-8 · DOI
  53. Weale ME, Yepiskoposyan L, Jager RF, Hovhannisyan N, Khudoyan A, Burbage-Hall O (2001) Armenian Y chromosome haplotypes reveal strong regional structure within a single ethno-national group. Hum Genet 109(6):659–674. doi: 10.1007/s00439-001-0627-9 · DOI
  54. Yunusbayev B, Metspalu M, Jarve M, Kutuev I, Rootsi S, Metspalu E et al (2012) The Caucasus as an asymmetric semipermeable barrier to ancient human migrations. Mol Biol Evol 29(1):359–365. doi: 10.1093/molbev/msr221 · DOI
  55. Zalloua PA, Xue Y, Khalife J et al (2008a) Y-Chromosomal diversity in lebanon is structured by recent historical events. Am J Hum Genet 82(4):873–882. doi: 10.1016/j.ajhg.2008.01.020 · DOI
  56. Zalloua PA, Platt DE, El Sibai M et al (2008b) Identifying genetic traces of historical expansions: phoenician footprints in the Mediterranean. Am J Hum Genet 83(5):633–642. doi: 10.1016/j.ajhg.2008.10.012 · DOI

Cited by

See all 20

Metadata

Authors
The Genographic Consortium, Balanovsky, O., Chukhryaeva, M., Zaporozhchenko, V., Urasin, V., Zhabagin, M., Hovhannisyan, A., Agdzhoyan, A., Dibirova, K., Kuznetsova, M., Koshel, S., Pocheshkhova, E., Alborova, I., Skhalyakho, R., Utevska, O., Mustafin, K., Yepiskoposyan, L., Tyler-Smith, C., & Balanovska, E.
Venue
Human Genetics
Published
2017-03-09
Volume
136
Issue
4
Pages
437-450
ISSN
  • 0340-6717
  • 1432-1203
Cited by
20
References
9
Language
en
Funders
  • Russian Science Foundation (14-14-00827)
  • Russian Foundation for Basic Research (16-36-00122, 16-06-00364)
  • The Wellcome Trust (098051)

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review