Quantitative proteomics to study the response of potato to contrasting fertilisation regimes
Open accessAbstract
There is concern over the sustainability and environmental impact of mineral fertilisers and crop protection inputs used in intensive arable crop production systems. However, replacing mineral with organic fertilisers (animal and green manures) and restricting the use of chemosynthetic crop protection may significantly reduce crop yields. The effects of (a) replacing mineral with composted cattle manure fertiliser input and (b) omitting pesticide-based crop protection on potato (Solanum tuberosum) tuber yield, leaf and tuber mineral nutrient content and leaf protein profiles were investigated. Switching to organic fertiliser had a greater effect on yield and protein profiles than the omission of chemosynthetic crop protection. Leaf N and P composition were significant drivers of protein expression, particularly proteins involved in photosynthesis such as the large subunit of RuBisCO, RuBisCO activase and the photosystem I reaction centre, which were at higher abundances in potato leaves grown under mineral fertiliser regimes. Proteins known to be induced in response to stress, such as dehydroascorbate reductase and Glutathione S-transferases, were also shown to be up-regulated under mineral fertilisation, possibly associated with higher Cd composition, whereas two proteins known to be involved in biotic stress (1,3-β-D-glucan glucanohydrolase; putative Kunitz-type tuber invertase inhibitor) were more abundant under compost fertilisation. Results showed that switching from mineral to organic fertilisers led to reduced N availability, a significant change in leaf protein expression and lower tuber yield. In contrast, omission of chemosynthetic crop protection inputs had limited effects on protein expression and no significant effect on tuber yield. This study provides information on the effects of changes in nutrient supply on protein expression patterns. It is a prerequisite for the development of functional molecular markers for a directed strategy to inform breeding programmes to improve potato nutrient use efficiency.
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There are statistically significant interactions between fertilisation and crop protection protocols with respect to gene and protein expression patterns.
“there were some statistically significant interactions between fertilisation and crop protection protocols with respect to gene and protein expression pattern”
A switch from pesticide-based conventional to organic crop protection protocols has a significant but more limited effect than fertilisation regimens on gene and protein expression patterns.
“Also, a switch from pesticide-based conventional to organic crop protection protocols has been shown to have a significant, but more limited effect than fertilisation regimens”
The switch from mineral to organic fertilisers results in significant differences in gene and protein expression patterns and, as a result, in secondary metabolite profiles; approximately 10% of proteins have been found to be either up- or down-regulated in response to contrasting fertiliser inputs in potato and wheat.
“Recent studies have shown that the switch from mineral to organic fertilisers results in significant differences in gene and protein expression patterns and, as a result, in secondary metabolite profiles; for example, approximately 10 % of proteins have been found to be either up- or down-regulated in response to contrasting fertiliser inputs in potato and wheat( 10 – 15 ).”
Organic and conventional crop production may differ significantly in crop rotation designs and fertilisation and crop protection protocols as well as in the type of crop varieties used.
“As a result, organic and conventional crop production may differ significantly in crop rotation designs and fertilisation and crop protection protocols as well as in the type of crop varieties used( 6 – 10 ).”
Both genetic and environmental/agronomic factors are known to affect the concentrations of N, [nitrate/nitrite], proteins, sugars, antioxidants/(poly)phenolics, Cd and pesticides in crops.
“This is not surprising as both genetic and environmental/agronomic factors are known to affect the concentrations of N, , , proteins, sugars, antioxidants/(poly)phenolics, Cd and pesticides in crops( 7 , 9 – 12 , 20 , 47 – 52 , 62 ).”
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Barański, M., Średnicka-Tober, D., Volakakis, N., Seal, C., Sanderson, R., Stewart, G. B., Benbrook, C., Biavati, B., Markellou, E., Giotis, C., et al. (2014) · British Journal of Nutrition · doi:10.1017/s0007114514001366 · Cited by 684 · see citing works
Self-citationTétard-Jones, C., Edwards, M., Rempelos, L., Gatehouse, A., Eyre, M., Wilcockson, S., & Leifert, C. (2013) · Agronomy · doi:10.3390/agronomy3010059 · Cited by 14 · see citing works
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- Authors
- Rempelos, L., Cooper, J., Wilcockson, S., Eyre, M., Shotton, P., Volakakis, N., Orr, C. H., Leifert, C., Gatehouse, A. M. R., & Tétard-Jones, C.
- Affiliations
- Newcastle University (GB)
- Northumbria University (GB)
- Corresponding author
- Gatehouse, A. M. R.
- Venue
- Molecular Breeding
- Published
- 2012-11-03
- Volume
- 31
- Issue
- 2
- Pages
- 363-378
- ISSN
- 1380-3743 (ISSN-L)
- 1572-9788
- OpenAlex
- W4235001379
- Cited by
- 24
- References
- 72
- Citations by year
- 2024: 3 · 2023: 4 · 2022: 2 · 2021: 1 · 2020: 4 · 2018: 1 · 2017: 2 · 2016: 2 · 2014: 4 · 2013: 1
- FWCI
- 2.44
- Type
- journal article
- Language
- en
- Open access
- green
- doi.org
- Licence
- cc-by-nc
- www.springer.com/tdm (tdm)
- Locations
- Molecular Breeding (publishedVersion)
- Teesside University Research Portal (Teesside University) (submittedVersion)
- TeesRep (Teesside University) (submittedVersion)
- Northumbria Research Link (Northumbria University) (submittedVersion)
- Newcastle University ePrints (Newcastle Univesity) (cc-by-nc)
- Topics
- Life Sciences › Agricultural and Biological Sciences › Soil Science › Agricultural Science and Fertilization
- Life Sciences › Agricultural and Biological Sciences › Soil Science › Plant Growth and Agriculture Techniques
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Growth Enhancement Techniques
- Keywords
- potato, organic fertilization, composted cattle manure, mineral fertilizers, tuber yield, photosynthesis proteins, Rubisco, stress proteins, cadmium, biotic stress, nutrient use efficiency, molecular markers
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