Effects of Previous Crop Management, Fertilization Regime and Water Supply on Potato Tuber Proteome and Yield
Open accessAbstract
There is increasing concern about the sustainability and environmental impacts of mineral fertilizer use in agriculture. Increased recycling of nutrients via the use of animal and green manures and fertilizers made from domestic organic waste may reduce reliance on mineral fertilizers. However, the relative availability of nutrients (especially nitrogen) is lower in organic compared to mineral fertilizers, which can result in significantly lower yields in nutrient demanding crops such as potato. It is therefore important to gain a better understanding of the factors affecting nutrient use efficiency (yield per unit fertilizer input) from organic fertilizers. Here we show that (a) previous crop management (organic vs. conventional fertilization and crop protection regimes), (b) organic fertilizer type and rate (composted cattle manure vs. composted chicken manure pellets) and (c) watering regimes (optimized and restricted) significantly affected leaf chlorophyll content, potato tuber N-concentration, proteome and yield. Protein inference by gel matching indicated several functional groups significantly affected by previous crop management and organic fertilizer type and rate, including stress/defense response, glycolysis and protein destination and storage. These results indicate genomic pathways controlling crop responses (nutrient use efficiency and yield) according to contrasting types and rates of organic fertilizers that can be linked to the respective encoding genes.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Organic and conventional crop production may differ significantly in crop rotation designs and fertilisation and crop protection protocols as well as in the type of crop varieties used.
“As a result, organic and conventional crop production may differ significantly in crop rotation designs and fertilisation and crop protection protocols as well as in the type of crop varieties used( 6 – 10 ).”
Both genetic and environmental/agronomic factors are known to affect the concentrations of N, [nitrate/nitrite], proteins, sugars, antioxidants/(poly)phenolics, Cd and pesticides in crops.
“This is not surprising as both genetic and environmental/agronomic factors are known to affect the concentrations of N, , , proteins, sugars, antioxidants/(poly)phenolics, Cd and pesticides in crops( 7 , 9 – 12 , 20 , 47 – 52 , 62 ).”
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
R: A Language and Environment for Statistical Computing
R Core Team (2000) · doi:10.32614/r.manuals · Cited by 355,706 · see citing works
Mixed-Effects Models in Sand S-PLUS
Pinheiro, J. C., & Bates, D. M. (2000) · Statistics and Computing · doi:10.1007/978-1-4419-0318-1 · Cited by 11,187 · see citing works
ter Braak, C. J. F., & Šmilauer, P. (2002) · Cited by 9,308 · see citing works
Mixed-Effects Models in S and S-PLUS
(2001) · Technometrics · doi:10.1198/tech.2001.s574 · Cited by 9,278 · see citing works
Agricultural sustainability and intensive production practices
Tilman, D., Cassman, K. G., Matson, P. A., Naylor, R., & Polasky, S. (2002) · Nature · doi:10.1038/nature01014 · Cited by 7,957 · see citing works
Crawley, M. J. (2007) · Medical Entomology and Zoology · Cited by 5,431 · see citing works
The story of phosphorus: Global food security and food for thought
Cordell, D., Drangert, J.-O., & White, S. B. (2009) · Global Environmental Change · doi:10.1016/j.gloenvcha.2008.10.009 · Cited by 5,200 · see citing works
Crawley, M. J. (2007) · Wiley eBooks · doi:10.1002/9780470515075 · Cited by 3,939 · see citing works
Soil Fertility and Biodiversity in Organic Farming
Maeder, P., Fließbach, A., Dubois, D., Gunst, L., Fried, P. M., & Niggli, U. A. (2002) · Science · doi:10.1126/science.1071148 · Cited by 2,946 · see citing works
Nitrogen in agriculture: balancing the cost of an essential resource
Robertson, G. P., & Vitousek, P. M. (2009) · Annual Review of Environment and Resources · doi:10.1146/annurev.environ.032108.105046 · Cited by 1,177 · see citing works
Solubilization of Plant Membrane Proteins for Analysis by Two-Dimensional Gel Electrophoresis
Hurkman, W. J., & Tanaka, C. K. (1986) · PLANT PHYSIOLOGY · doi:10.1104/pp.81.3.802 · Cited by 923 · see citing works
Genomics-assisted breeding for crop improvement
Varshney, R. K., Graner, A., & Sorrells, M. E. (2005) · Trends in Plant Science · doi:10.1016/j.tplants.2005.10.004 · Cited by 745 · see citing works
Bulluck, L. R., Brosius, M. R., Evanylo, G. K., & Ristaino, J. B. (2002) · Applied Soil Ecology · doi:10.1016/s0929-1393(01)00187-1 · Cited by 695 · see citing works
Dynamics of soil microbial biomass and activity in conventional and organic farming systems
Gunapala, N., & Scow, K. M. (1998) · Soil Biology and Biochemistry · doi:10.1016/s0038-0717(97)00162-4 · Cited by 280 · see citing works
Comparison of Tuber Proteomes of Potato Varieties, Landraces, and Genetically Modified Lines
Lehesranta, S. J., Davies, H. V., Shepherd, L. V. T., Nunan, N., McNicol, J., Auriola, S. O. K., Koistinen, K. M., Suomalainen, S., Kokko, H. I., & Kärenlampi, S. O. (2005) · PLANT PHYSIOLOGY · doi:10.1104/pp.105.060152 · Cited by 213 · see citing works
Hepperly, P. R., Lotter, D., Ziegler-Ulsh, C., Seidel, R., & Reider, C. (2009) · Compost Science & Utilization · doi:10.1080/1065657x.2009.10702410 · Cited by 204 · see citing works
Proteomic Analysis of Seed Dormancy in Arabidopsis
Chibani, K., Ali-Rachedi, S., Job, C., Job, D., Jullien, M., & Grappin, P. (2006) · PLANT PHYSIOLOGY · doi:10.1104/pp.106.087452 · Cited by 188 · see citing works
Herencia, J. F., Porras, J. C. R., Melero, S., García-Galavís, P. A., Morillo, E., & Maqueda, C. (2007) · Agronomy Journal · doi:10.2134/agronj2006.0168 · Cited by 180 · see citing works
Songsri, P., Jogloy, S., Holbrook, C. C., Kesmala, T., Vorasoot, N., Akkasaeng, C., & Patanothai, A. (2008) · Agricultural Water Management · doi:10.1016/j.agwat.2008.10.009 · Cited by 167 · see citing works
A comparative study of the microbiology of soils managed under organic and conventional regimes
Shannon, D., Sen, A. M., & Johnson, D. B. (2002) · Soil Use and Management · doi:10.1111/j.1475-2743.2002.tb00269.x · Cited by 137 · see citing works
Proteomic analysis of the potato tuber life cycle
Lehesranta, S. J., Davies, H. V., Shepherd, L. V. T., Koistinen, K. M., Massat, N. J., Nunan, N., McNicol, J. W., & Kärenlampi, S. O. (2006) · PROTEOMICS · doi:10.1002/pmic.200600383 · Cited by 86 · see citing works
Nematodes as indicators of enhanced microbiological activity in a Scottish organic farming system
Griffiths, B. S., Ritz, K., & Wheatley, R. (1994) · Soil Use and Management · doi:10.1111/j.1475-2743.1994.tb00452.x · Cited by 83 · see citing works
Effects of agricultural production systems and their components on protein profiles of potato tubers
Lehesranta, S. J., Koistinen, K. M., Massat, N., Davies, H. V., Shepherd, L. V. T., McNicol, J. W., Cakmak, I., Cooper, J., Lück, L., Kärenlampi, S. O., et al. (2007) · PROTEOMICS · doi:10.1002/pmic.200600889 · Cited by 83 · see citing works
Self-citationHack, H. R. B., Gali, H., Klemke, T., Klose, R., Meier, U., Stauß, R., & Witzenberger, A. (1993) · Federal Research Centre for Cultivated Plants (Julius Kühn-Institut) · Cited by 83 · see citing works
Chang, E., Chung, R., & Wang, F. (2008) · Soil Science & Plant Nutrition · doi:10.1111/j.1747-0765.2008.00264.x · Cited by 59 · see citing works
Phänologische Entwicklungsstadien der Kartoffel (Solanum tuberosum L.)
Hack, H. R. B., Gall, H. E., Klamke, T., et al. (1993) · Cited by 51 · see citing works
Transcriptome Analysis of Potato TubersEffects of Different Agricultural Practices
van Dijk, J. P., Cankar, K., Scheffer, S. J., Beenen, H. G., Shepherd, L. V. T., Stewart, D., Davies, H. V., Wilkockson, S. J., Leifert, C., Gruden, K., et al. (2009) · Journal of Agricultural and Food Chemistry · doi:10.1021/jf802815d · Cited by 47 · see citing works
Self-citationGreenhouse gas budgets of crop production : current and likely future trends
Flynn, H. C., & Smith, P. (2010) · Aberdeen University Research Archive (Aberdeen University) · Cited by 34 · see citing works
Nawrocki, A., Thorup‐Kristensen, K., & Jensen, O. N. (2011) · Journal of Proteomics · doi:10.1016/j.jprot.2011.06.021 · Cited by 33 · see citing works
Effect of water stress on chlorophyll meter readings in winter wheat
Barraclough, P. B., & Kyte, J. (2001) · Springer eBooks · doi:10.1007/0-306-47624-x_350 · Cited by 31 · see citing works
Vos, J., & Groenwold, J. (1988) · Annals of Botany · doi:10.1093/oxfordjournals.aob.a087668 · Cited by 28 · see citing works
van Dijk, J. P., Cankar, K., Hendriksen, P. J. M., Beenen, H. G., Zhu, M., Scheffer, S., Shepherd, L. V. T., Stewart, D., Davies, H. V., Leifert, C., et al. (2012) · Journal of Agricultural and Food Chemistry · doi:10.1021/jf204696w · Cited by 26 · see citing works
Self-citationQuantitative proteomics to study the response of wheat to contrasting fertilisation regimes
Tétard-Jones, C., Shotton, P. N., Rempelos, L., Cooper, J., Eyre, M., Orr, C. H., Leifert, C., & Gatehouse, A. M. R. (2013) · Molecular Breeding · doi:10.1007/s11032-012-9796-6 · Cited by 25 · see citing works
Self-citationEyre, M. D., Sanderson, R., Shotton, P. N., & Leifert, C. (2009) · Annals of Applied Biology · doi:10.1111/j.1744-7348.2009.00337.x · Cited by 24 · see citing works
Self-citationQuantitative proteomics to study the response of potato to contrasting fertilisation regimes
Rempelos, L., Cooper, J., Wilcockson, S., Eyre, M., Shotton, P., Volakakis, N., Orr, C. H., Leifert, C., Gatehouse, A. M. R., & Tétard-Jones, C. (2013) · Molecular Breeding · doi:10.1007/s11032-012-9795-7 · Cited by 24 · see citing works
Self-citationWarman, P. R., Burnham, J. C., & Eaton, L. J. (2009) · Scientia Horticulturae · doi:10.1016/j.scienta.2009.05.024 · Cited by 22 · see citing works
Differences in Phoshorus Use Efficiency in Potato Genotypes.
Sharma, R., & Trehan, S. P. (2005) · Advances in Horticultural Science · doi:10.1400/14353 · Cited by 12 · see citing works
The Worldwide Availability of Phosphate Rock
Fantel, R. J., Peterson, G., & STOWASSER, W. F. (1985) · Natural Resources Forum · doi:10.1111/j.1477-8947.1985.tb01036.x · Cited by 9 · see citing works
OLESINSKI, A. A., WOLF, S., Rudich, J., & Marani, A. (1989) · Annals of Botany · doi:10.1093/oxfordjournals.aob.a087890 · Cited by 6 · see citing works
Flagged first, then by citations
Research works printed but not linked: 2
- Ceylan, S.; Mordogan, N.; Akdemir, H.; Cakici, H. Effect of organic fertilizers on some agronomic and chemical properties of potato (Solanum tuberosum L.). Asian J. Chem. 2006, 18, 1223-1230.
- Crawley, M.J. The R Book; John Wiley and Son: Chichester, UK, 2007.
Cited by
Sorted by citations
Barański, M., Średnicka-Tober, D., Volakakis, N., Seal, C., Sanderson, R., Stewart, G. B., Benbrook, C., Biavati, B., Markellou, E., Giotis, C., et al. (2014) · British Journal of Nutrition · doi:10.1017/s0007114514001366 · Cited by 684 · see citing works
“This is not surprising as both genetic and environmental/agronomic factors are known to affect the concentrations of N, NO 2 3 , NO 2 2 , proteins, sugars, antioxidants/ (poly)phenolics, Cd and pesticides in crops (7,9–12,20,47–52,62) .”
Self-citationRempelos, L., Barański, M., Wang, J., Adams, T. N., Adebusuyi, K., Beckman, J. J., Brockbank, C. J., Douglas, B. S., Feng, T., Greenway, J. D., et al. (2021) · Agronomy · doi:10.3390/agronomy11122494 · Cited by 65 · see citing works
Self-citationSelected Antioxidants in Organic vs. Conventionally Grown Apple Fruits
Średnicka-Tober, D., Barański, M., Kazimierczak, R., Ponder, A., Kopczyńska, K., & Hallmann, E. (2020) · Applied Sciences · doi:10.3390/app10092997 · Cited by 40 · see citing works
Rempelos, L., Wang, J., Sufar, E. K., Almuayrifi, M. S. B., Knutt, D., Leifert, H., Leifert, A., Wilkinson, A., Shotton, P. N., Hasanaliyeva, G., et al. (2023) · Foods · doi:10.3390/foods12061209 · Cited by 35 · see citing works
Self-citationTapia‐Hernández, J. A., Madera-Santana, T. J., Rodríguez‐Félix, F., & Barreras‐Urbina, C. G. (2022) · Journal of Nanomaterials · doi:10.1155/2022/5697803 · Cited by 29 · see citing works
Qin, A., Fang, Y., Ning, D., Liu, Z., Zhao, B., Xiao, J., Duan, A., & Yong, B. (2019) · Agronomy · doi:10.3390/agronomy9120865 · Cited by 26 · see citing works
Meise, P., Józefowicz, A. M., Uptmoor, R., Mock, H., Ordon, F., & Schum, A. (2017) · Journal of Proteomics · doi:10.1016/j.jprot.2017.07.010 · Cited by 15 · see citing works
Modelling Pathways to Rubisco Degradation: A Structural Equation Network Modelling Approach
Tétard‐Jones, C., Gatehouse, A. M. R., Cooper, J. M., Leifert, C., & Rushton, S. (2014) · PLoS ONE · doi:10.1371/journal.pone.0087597 · Cited by 10 · see citing works
Self-citationOrganic materials to enhance climate change resilience on shallot production: a review
Murtiningsih, R., Sopha, G. A., Marpaung, A. E., Tan, S. S., Cartika, I., Lestari, I. P., Amisnaipa, A., Rawung, J. B. M., Hamdani, K. K., Gunadi, N., et al. (2023) · IOP Conference Series Earth and Environmental Science · doi:10.1088/1755-1315/1165/1/012036 · Cited by 5 · see citing works
Rosliani, R., Yufdy, M. P., & Hilman, Y. (2020) · Sustainability Agri Food and Environmental Research · doi:10.7770/safer-v0n0-art1582 · Cited by 2 · see citing works
Geofrey, K. G., Joseph, N., & Dorcas, K. A. (2014) · International Journal of Plant & Soil Science · doi:10.9734/ijpss/2014/10337 · Cited by 2 · see citing works
Sahoo, M. R., Roy, S. S., Singh, N., Devi, Y. I., Prakash, N., & Ngachan, S. V. (2015) · Journal of root crops · Cited by 1 · see citing works
Zidan, A., & Ibraheem, M. (2023) · Agricultural Science and Technology · doi:10.15547/ast.2023.01.008 · Cited by 1 · see citing works
Al-Obidiy, J. A., Mohammed, H. J., & Alkobaisy, J. S. (2025) · Anbar Journal of Agricultural Sciences · doi:10.32649/ajas.2025.188288
- Authors
- Tétard-Jones, C., Edwards, M., Rempelos, L., Gatehouse, A., Eyre, M., Wilcockson, S., & Leifert, C.
- Affiliations
- School of Agriculture, Food and Rural Development, Molecular Agriculture Group, Nafferton Ecological Farming Group, Newcastle University, Nafferton Farm, Stocksfield, UK
- Newcastle University (GB)
- Venue
- Agronomy
- Publisher
- MDPI AG
- Published
- 2013-01-15
- Volume
- 3
- Issue
- 1
- Pages
- 59-85
- ISSN
- 2073-4395 (ISSN-L)
- OpenAlex
- W2099498256
- Cited by
- 14
- References
- 39
- Citations by year
- 2025: 1 · 2023: 3 · 2022: 1 · 2021: 1 · 2020: 2 · 2019: 1 · 2017: 1 · 2015: 1 · 2014: 3
- FWCI
- 1.93
- Type
- journal article
- Language
- en
- Open access
- gold
- dx.doi.org
- Licence
- Locations
- Agronomy (publishedVersion, cc-by)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Newcastle University ePrints (Newcastle Univesity) (cc-by)
- Topics
- Life Sciences › Agricultural and Biological Sciences › Soil Science › Agricultural Science and Fertilization
- Life Sciences › Agricultural and Biological Sciences › Soil Science › Plant Growth and Agriculture Techniques
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Agriculture, Plant Science, Crop Management
- Keywords
- potato, organic fertilization, mineral fertilizers, crop protection, cattle manure, water supply, nutrient use efficiency, chlorophyll content, glycolysis, protein storage, tuber yield
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review