The metabolomics standards initiative (MSI)

Genomics, gene expression and DNA arrays

Lockhart, D. J., & Winzeler, E. A. (2000) · Nature · doi:10.1038/35015701 · Cited by 2,055

Contemporary issues in toxicology the role of metabonomics in toxicology and its evaluation by the COMET project

Lindon, J. C., Nicholson, J. K., Holmes, E. C., Antti, H., Bollard, M. E., Keun, H. C., Beckonert, O. P., Ebbels, T. M. D., Reily, M. D., Robertson, D. G., et al. (2003) · Toxicology and Applied Pharmacology · doi:10.1016/s0041-008x(02)00079-0 · Cited by 385

A proposed framework for the description of plant metabolomics experiments and their results

JENKINS, H. A., Hardy, N. W., Beckmann, M., Draper, J., SMITH, A. R., Taylor, J., Fiehn, O., Goodacre, R., Bino, R. J., Hall, R. D., et al. (2004) · Nature Biotechnology · doi:10.1038/nbt1041 · Cited by 285

Summary recommendations for standardization and reporting of metabolic analyses

The Standard Metabolic Reporting Structures working group (2005) · Nature Biotechnology · doi:10.1038/nbt0705-833 · Cited by 277

Molecular systems biology

Sewald, N., & Pühler, A. (2007) · Journal of Biotechnology · doi:10.1016/j.jbiotec.2007.02.010 · Cited by 130

Establishing Reporting Standards for Metabolomic and Metabonomic Studies: A Call for Participation

Fiehn, O., Kristal, B. S., van Ommen, B., Sumner, L. W., Sansone, S., Taylor, C., Hardy, N. W., & Kaddurah‐Daouk, R. (2006) · OMICS A Journal of Integrative Biology · doi:10.1089/omi.2006.10.158 · Cited by 108

The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics

Jones, A. R., Miller, M., Aebersold, R. H., Apweiler, R., Ball, C. A., Brāzma, A., DeGreef, J., Hardy, N. W., Hermjakob, H., Hubbard, S. J., et al. (2007) · Nature Biotechnology · doi:10.1038/nbt1347 · Cited by 106

Metabolomics Standards Workshop and the development of international standards for reporting metabolomics experimental results

Castle, A. L. (2006) · Briefings in Bioinformatics · doi:10.1093/bib/bbl008 · Cited by 102

The Work of the Human Proteome Organisation's Proteomics Standards Initiative (HUPO PSI)

Taylor, C. F., Hermjakob, H., Julian, R. K., Garavelli, J. S., Aebersold, R. H., & Apweiler, R. (2006) · OMICS A Journal of Integrative Biology · doi:10.1089/omi.2006.10.145 · Cited by 74

MGED Standards: Work in Progress

Ball, C. A., & Brāzma, A. (2006) · OMICS A Journal of Integrative Biology · doi:10.1089/omi.2006.10.138 · Cited by 64

Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices

Alseekh, S., Aharoni, A., Brotman, Y., Contrepois, K., D’Auria, J. C., Ewald, J., Ewald, J. C., Fraser, P. D., Giavalisco, P., Hall, R. D., et al. (2021) · Nature Methods · doi:10.1038/s41592-021-01197-1 · Cited by 1,219

Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools

Sud, M., Fahy, E., Cotter, D., Azam, K., Vadivelu, I., Burant, C., Edison, A. S., Fiehn, O., Higashi, R. M., Nair, K. S., et al. (2015) · Nucleic Acids Research · doi:10.1093/nar/gkv1042 · Cited by 1,029

A tutorial review: Metabolomics and partial least squares-discriminant analysis – a marriage of convenience or a shotgun wedding

Gromski, P. S., Muhamadali, H., Ellis, D. I., Yun Xu, A., Correa, E. S., Turner, M. L., & Goodacre, R. (2015) · Analytica Chimica Acta · doi:10.1016/j.aca.2015.02.012 · Cited by 953

Systems level studies of mammalian metabolomes: the roles of mass spectrometry and nuclear magnetic resonance spectroscopy

Dunn, W. B., Broadhurst, D., Atherton, H. J., Goodacre, R., & Griffin, J. L. (2010) · Chemical Society Reviews · doi:10.1039/b906712b · Cited by 909

Metabolomics for Functional Genomics, Systems Biology, and Biotechnology

Saito, K., & Matsuda, F. (2009) · Annual Review of Plant Biology · doi:10.1146/annurev.arplant.043008.092035 · Cited by 764

Analytical Methods in Untargeted Metabolomics: State of the Art in 2015

Alonso, A., Marsal, S., & Julià, A. (2015) · Frontiers in Bioengineering and Biotechnology · doi:10.3389/fbioe.2015.00023 · Cited by 727

Integrated omics: tools, advances and future approaches

Misra, B. B., Langefeld, C., Olivier, M., & Cox, L. A. (2019) · Journal of Molecular Endocrinology · doi:10.1530/jme-18-0055 · Cited by 686

Quality control for plant metabolomics: reporting MSI‐compliant studies

Fiehn, O., Wohlgemuth, G., Scholz, M., Kind, T., Lee, D. Y., Lü, Y., Moon, S. M., & Nikolau, B. J. (2008) · The Plant Journal · doi:10.1111/j.1365-313x.2007.03387.x · Cited by 677

Mass-spectrometry-based metabolomics: limitations and recommendations for future progress with particular focus on nutrition research

Scalbert, A., Brennan, L., Fiehn, O., Hankemeier, T., Kristal, B. S., van Ommen, B., Pujos-Guillot, E., Verheij, E., Wishart, D., & Wopereis, S. (2009) · Metabolomics · doi:10.1007/s11306-009-0168-0 · Cited by 565

TagFinder for the quantitative analysis of gas chromatography—mass spectrometry (GC-MS)-based metabolite profiling experiments

Luedemann, A., Strassburg, K., Erban, A., & Kopka, J. (2008) · Bioinformatics · doi:10.1093/bioinformatics/btn023 · Cited by 543

The food metabolome: a window over dietary exposure

Scalbert, A., Brennan, L., Manach, C., Andres-Lacueva, C., Dragsted, L. O., Draper, J., Rappaport, S. M., van der Hooft, J. J., & Wishart, D. S. (2014) · The American Journal of Clinical Nutrition · doi:10.3945/ajcn.113.076133 · Cited by 519

Liquid chromatography–mass spectrometry based global metabolite profiling: A review

Theodoridis, G. A., Gika, H., Want, E. J., & Wilson, I. D. (2011) · Analytica Chimica Acta · doi:10.1016/j.aca.2011.09.042 · Cited by 519

The role of reporting standards for metabolite annotation and identification in metabolomic studies

Salek, R. M., Steinbeck, C., Viant, M. R., Goodacre, R., & Dunn, W. B. (2013) · GigaScience · doi:10.1186/2047-217x-2-13 · Cited by 528

Plant Metabolomics: An Overview of the Role of Primary and Secondary Metabolites against Different Environmental Stress Factors

Salam, U., Ullah, S., Tang, Z.-H., Elateeq, A. A., Khan, Y., Khan, J., Khan, A., & Ali, S. (2023) · Life · doi:10.3390/life13030706 · Cited by 480

Artificial intelligence for natural product drug discovery

Mullowney, M. W., Duncan, K., Elsayed, S. S., Garg, N., van der Hooft, J. J. J., Martin, N. I., Meijer, D., Terlouw, B. R., Biermann, F., Blin, K., et al. (2023) · Nature Reviews Drug Discovery · doi:10.1038/s41573-023-00774-7 · Cited by 551

‘Omic’ technologies: genomics, transcriptomics, proteomics and metabolomics

Horgan, R., & Kenny, L. C. (2011) · The Obstetrician & Gynaecologist · doi:10.1576/toag.13.3.189.27672 · Cited by 461

The Metabolomics Standards Initiative

MSI Board Members: (2007) · Nature Biotechnology · doi:10.1038/nbt0807-846b · Cited by 454

Cardiovascular Metabolomics

McGarrah, R. W., Crown, S. B., Zhang, G., Shah, S. H., & Newgard, C. B. (2018) · Circulation Research · doi:10.1161/circresaha.117.311002 · Cited by 430

Mass spectrometry‐based plant metabolomics: Metabolite responses to abiotic stress

Jorge, T. F., Rodrigues, J. A., Caldana, C., Schmidt, R., van Dongen, J. T., THOMAS‐OATES, J. E., & António, C. (2015) · Mass Spectrometry Reviews · doi:10.1002/mas.21449 · Cited by 381

Machine Learning Applications for Mass Spectrometry-Based Metabolomics

Liebal, U. W., An, P. N. T., Sudhakar, M., Raman, K., & Blank, L. M. (2020) · Metabolites · doi:10.3390/metabo10060243 · Cited by 387

Mass spectrometric based approaches in urine metabolomics and biomarker discovery

Khamis, M. M., Adamko, D. J., & El‐Aneed, A. (2015) · Mass Spectrometry Reviews · doi:10.1002/mas.21455 · Cited by 354

Review on metabolomics for food authentication

Cubero-Leon, E., Peñalver, R., & Maquet, A. (2013) · Food Research International · doi:10.1016/j.foodres.2013.11.041 · Cited by 335

Transcriptomic and metabolomic data integration

Cavill, R., Jennen, D. G. J., Kleinjans, J. C. S., & Briedé, J. J. (2015) · Briefings in Bioinformatics · doi:10.1093/bib/bbv090 · Cited by 341

Influence of abiotic stresses on plant proteome and metabolome changes

Rodziewicz, P., Swarcewicz, B., Chmielewska, K., Wojakowska, A., & Stobiecki, M. (2013) · Acta Physiologiae Plantarum · doi:10.1007/s11738-013-1402-y · Cited by 338

A guide to the identification of metabolites in NMR-based metabonomics/metabolomics experiments

Dona, A. C., Kyriakides, M., Scott, F. H., Shephard, E. A., Varshavi, D., Veselkov, K., & Everett, J. R. (2016) · Computational and Structural Biotechnology Journal · doi:10.1016/j.csbj.2016.02.005 · Cited by 346

Investigation of Human Blood Plasma Sample Preparation for Performing Metabolomics Using Ultrahigh Performance Liquid Chromatography/Mass Spectrometry

Bruce, S. J., Tavazzi, I., Parisod, V., Rezzi, S., Kochhar, S., & Guy, P. A. (2009) · Analytical Chemistry · doi:10.1021/ac8024569 · Cited by 322

Metabolomic technologies and their application to the study of plants and plant–host interactions

Allwood, J. W., Ellis, D. I., & Goodacre, R. (2007) · Physiologia Plantarum · doi:10.1111/j.1399-3054.2007.01001.x · Cited by 307

Advances in mass spectrometry-based metabolomics for investigation of metabolites

Ren, J., Zhang, A., Kong, L. D., & Wang, X. (2018) · RSC Advances · doi:10.1039/c8ra01574k · Cited by 311

Biostimulants for Plant Growth and Mitigation of Abiotic Stresses: A Metabolomics Perspective

Nephali, L. P., Piater, L. A., Dubery, I. A., Patterson, V., Huyser, J. J., Burgess, K., & Tugizimana, F. (2020) · Metabolites · doi:10.3390/metabo10120505 · Cited by 315

Current trends and future requirements for the mass spectrometric investigation of microbial, mammalian and plant metabolomes

Dunn, W. B. (2008) · Physical Biology · doi:10.1088/1478-3975/5/1/011001 · Cited by 287

Promises and pitfalls of untargeted metabolomics

Gertsman, I., & Barshop, B. A. (2018) · Journal of Inherited Metabolic Disease · doi:10.1007/s10545-017-0130-7 · Cited by 271

Metabolite discovery through global annotation of untargeted metabolomics data

Chen, L., Lu, W., Wang, L., Xing, X., Chen, Z., Teng, X., Zeng, X., Muscarella, A. D., Shen, Y., Cowan, A. J., et al. (2021) · Nature Methods · doi:10.1038/s41592-021-01303-3 · Cited by 266

Metabolomic approaches toward understanding nitrogen metabolism in plants

Kusano, M., Fukushima, A., Redestig, H., & Saito, K. (2011) · Journal of Experimental Botany · doi:10.1093/jxb/erq417 · Cited by 260

Alleviation of Drought Stress and Metabolic Changes in Timothy (Phleum pratense L.) Colonized with Bacillus subtilis B26

Gagné-Bourque, F., Bertrand, A., Claessens, A., Aliferis, K. A., & Jabaji, S. (2016) · Frontiers in Plant Science · doi:10.3389/fpls.2016.00584 · Cited by 243

Nutrimetabolomics: An Integrative Action for Metabolomic Analyses in Human Nutritional Studies

Ulaszewska, M., Weinert, C. H., Trimigno, A., Portmann, R., Andrés‐Lacueva, C., Badertscher, R., Brennan, L., Brunius, C. F., Bub, A., Capozzi, F., et al. (2018) · Molecular Nutrition & Food Research · doi:10.1002/mnfr.201800384 · Cited by 251

Two‐dimensional J‐resolved NMR spectroscopy: review of a key methodology in the metabolomics toolbox

Ludwig, C., & Viant, M. R. (2009) · Phytochemical Analysis · doi:10.1002/pca.1186 · Cited by 246

Potential and limitations of non-targeted fingerprinting for authentication of food in official control

Esslinger, S., Riedl, J., & Fauhl‐Hassek, C. (2013) · Food Research International · doi:10.1016/j.foodres.2013.10.015 · Cited by 238

Standardizing the experimental conditions for using urine in NMR-based metabolomic studies with a particular focus on diagnostic studies: a review

Emwas, A.-H. M., Luchinat, C., Turano, P., Tenori, L., Roy, R., Salek, R. M., Ryan, D., Merzaban, J. S., Kaddurah‐Daouk, R., Zeri, A. C. D. M., et al. (2014) · Metabolomics · doi:10.1007/s11306-014-0746-7 · Cited by 250

Analytical and statistical approaches to metabolomics research

Issaq, H. J., Van, Q. N., Waybright, T. J., Muschik, G. M., & Veenstra, T. D. (2009) · Journal of Separation Science · doi:10.1002/jssc.200900152 · Cited by 227

A metabolome atlas of the aging mouse brain

Ding, J., Ji, J., Rabow, Z., Shen, T., Folz, J. S., Brydges, C. R., Fan, S., Lu, X., Mehta, S. S., Showalter, M. R., et al. (2021) · Nature Communications · doi:10.1038/s41467-021-26310-y · Cited by 224

Translational Metabolomics: Current Challenges and Future Opportunities

Pinu, F. R., Goldansaz, S. A., & Jaine, J. (2019) · Metabolites · doi:10.3390/metabo9060108 · Cited by 233

Use cases, best practice and reporting standards for metabolomics in regulatory toxicology

Viant, M. R., Ebbels, T. M. D., Beger, R. D., Ekman, D. R., Epps, D. J. T., Kamp, H., Leonards, P. E. G., Loizou, G. D., MacRae, J. I., van Ravenzwaay, B., et al. (2019) · Nature Communications · doi:10.1038/s41467-019-10900-y · Cited by 214

Mass spectrometry in plant metabolomics strategies: from analytical platforms to data acquisition and processing

Ernst, M., Silva, D. B., Silva, R., Vêncio, R. Z. N., & Lopes, N. P. (2014) · Natural Product Reports · doi:10.1039/c3np70086k · Cited by 187

COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

Salek, R. M., Neumann, S., Schober, D., Hummel, J., Billiau, K., Kopka, J., Correa, E. S., Reijmers, T. H., Rosato, A., Tenori, L., et al. (2015) · Metabolomics · doi:10.1007/s11306-015-0810-y · Cited by 185

Retention index thresholds for compound matching in GC–MS metabolite profiling

Strehmel, N., Hummel, J., Erban, A., Strassburg, K., & Kopka, J. (2008) · Journal of Chromatography B · doi:10.1016/j.jchromb.2008.04.042 · Cited by 178

Metabolomics: the chemistry between ecology and genetics

Macel, M., van Dam, N. M., & Keurentjes, J. J. B. (2010) · Molecular Ecology Resources · doi:10.1111/j.1755-0998.2010.02854.x · Cited by 181

Untargeted LC/MS-based metabolic phenotyping (metabonomics/metabolomics): The state of the art

Gika, H., Virgiliou, C., Theodoridis, G. A., Plumb, R. S., & Wilson, I. D. (2019) · Journal of Chromatography B · doi:10.1016/j.jchromb.2019.04.009 · Cited by 175

Metabolomics analysis I. Selection of biological samples and practical aspects preceding sample preparation

Álvarez-Sánchez, B., Priego‐Capote, F., & de Castro, M. D. L. (2009) · TrAC Trends in Analytical Chemistry · doi:10.1016/j.trac.2009.12.003 · Cited by 176

Metabolomics in rheumatic diseases: desperately seeking biomarkers

Gumá, M., Tiziani, S., & Firestein, G. S. (2016) · Nature Reviews Rheumatology · doi:10.1038/nrrheum.2016.1 · Cited by 170

Recommendations and Standardization of Biomarker Quantification Using NMR-Based Metabolomics with Particular Focus on Urinary Analysis

Emwas, A.-H. M., Roy, R., McKay, R. T., Ryan, D., Brennan, L., Tenori, L., Luchinat, C., Gao, X., Zeri, A. C. D. M., Gowda, G. A. N., et al. (2016) · Journal of Proteome Research · doi:10.1021/acs.jproteome.5b00885 · Cited by 165

Rational Cell Culture Optimization Enhances Experimental Reproducibility in Cancer Cells

Wright Muelas, M., Ortega, F., Breitling, R., Bendtsen, C., & Westerhoff, H. V. (2018) · Scientific Reports · doi:10.1038/s41598-018-21050-4 · Cited by 160

Combined Nuclear Magnetic Resonance Spectroscopy and Mass Spectrometry Approaches for Metabolomics

Letertre, M. P. M., Dervilly, G., & Giraudeau, P. (2020) · Analytical Chemistry · doi:10.1021/acs.analchem.0c04371 · Cited by 168

Using fragmentation trees and mass spectral trees for identifying unknown compounds in metabolomics

Vaniya, A., & Fiehn, O. (2015) · TrAC Trends in Analytical Chemistry · doi:10.1016/j.trac.2015.04.002 · Cited by 162

Towards recommendations for metadata and data handling in plant phenotyping

Krajewski, P., Chen, D., Ćwiek‐Kupczyńska, H., van Dijk, A. D. J., Fiorani, F., Kersey, P. J., Klukas, C., Lange, M., Markiewicz, A., Nap, J. P., et al. (2015) · Journal of Experimental Botany · doi:10.1093/jxb/erv271 · Cited by 152

Data standards can boost metabolomics research, and if there is a will, there is a way

Rocca‐Serra, P., Salek, R. M., Arita, M., Correa, E. S., Dayalan, S., Gonzalez-Beltran, A. N., Ebbels, T. M. D., Goodacre, R., Hastings, J., Haug, K., et al. (2015) · Metabolomics · doi:10.1007/s11306-015-0879-3 · Cited by 150

Mass spectrometry as a quantitative tool in plant metabolomics

Jorge, T. F., Mata, A. T., & António, C. (2016) · Philosophical Transactions of the Royal Society A Mathematical Physical and Engineering Sciences · doi:10.1098/rsta.2015.0370 · Cited by 160

Birmingham Metabolite Library: a publicly accessible database of 1-D 1H and 2-D 1H J-resolved NMR spectra of authentic metabolite standards (BML-NMR)

Ludwig, C., Easton, J. M., Lodi, A., Tiziani, S., Manzoor, S. E., Southam, A. D., Byrne, J. J., Bishop, L. M., He, S., Arvanitis, T. N., et al. (2011) · Metabolomics · doi:10.1007/s11306-011-0347-7 · Cited by 147

Updates in metabolomics tools and resources: 2014–2015

Misra, B. B., & van der Hooft, J. J. J. (2015) · Electrophoresis · doi:10.1002/elps.201500417 · Cited by 149

Direct infusion mass spectrometry metabolomics dataset: a benchmark for data processing and quality control

Kirwan, J., Weber, R. J. M., Broadhurst, D., & Viant, M. R. (2014) · Scientific Data · doi:10.1038/sdata.2014.12 · Cited by 146

Progress toward single cell metabolomics

Rubakhin, S. S., Lanni, E. J., & Sweedler, J. V. (2012) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2012.10.021 · Cited by 133

Serum amino acid profiles and their alterations in colorectal cancer

Leichtle, A. B., Nuoffer, J., Ceglarek, U., Kase, J., Conrad, T., Witzigmann, H., Thiery, J., & Fiedler, M. (2011) · Metabolomics · doi:10.1007/s11306-011-0357-5 · Cited by 131

Measures for interoperability of phenotypic data: minimum information requirements and formatting

Ćwiek‐Kupczyńska, H., Altmann, T., Arend, D., Arnaud, E., Chen, D., Cornut, G., Fiorani, F., Frohmberg, W., Junker, A., Klukas, C., et al. (2016) · Plant Methods · doi:10.1186/s13007-016-0144-4 · Cited by 133

Exhaled Volatile Organic Compounds of Infection: A Systematic Review

Ahmed, W., Lawal, O., Nijsen, T. M. E., Goodacre, R., & Fowler, S. J. (2017) · ACS Infectious Diseases · doi:10.1021/acsinfecdis.7b00088 · Cited by 130

LC-MS-based holistic metabolic profiling. Problems, limitations, advantages, and future perspectives.

Gika, H., Wilson, I., & Theodoridis, G. (2014) · Journal of chromatography. B, Analytical technologies in the biomedical and life sciences · doi:10.1016/j.jchromb.2014.01.054 · Cited by 111

Inter-laboratory reproducibility of fast gas chromatography–electron impact–time of flight mass spectrometry (GC–EI–TOF/MS) based plant metabolomics

Allwood, J. W., Erban, A., de Koning, S., Dunn, W. B., Luedemann, A., Lommen, A., Kay, L., Löscher, R., Kopka, J., & Goodacre, R. (2009) · Metabolomics · doi:10.1007/s11306-009-0169-z · Cited by 128

Comparative metabolomics of the diatom Skeletonema marinoi in different growth phases

Vidoudez, C., & Pohnert, G. (2011) · Metabolomics · doi:10.1007/s11306-011-0356-6 · Cited by 122

What Do We Know about the Chemistry of Strawberry Aroma?

Ulrich, D., Kecke, S., & Olbricht, K. (2018) · Journal of Agricultural and Food Chemistry · doi:10.1021/acs.jafc.8b01115 · Cited by 121

Metabolomics for personalized medicine: the input of analytical chemistry from biomarker discovery to point-of-care tests

Castelli, F. A., Rosati, G., Moguet, C., Fuentes‐Chust, C., Marrugo-Ramírez, J., Lefèbvre, T., Volland, H., Merkoçi, A., Simon, S., Fenaille, F., et al. (2021) · Analytical and Bioanalytical Chemistry · doi:10.1007/s00216-021-03586-z · Cited by 136

Metabolomics in chemical ecology

Kuhlisch, C., & Pohnert, G. (2015) · Natural Product Reports · doi:10.1039/c5np00003c · Cited by 127

Metabolomics – A robust bioanalytical approach for the discovery of the modes-of-action of pesticides: A review

Aliferis, K. A., & Jabaji, S. (2011) · Pesticide Biochemistry and Physiology · doi:10.1016/j.pestbp.2011.03.004 · Cited by 118

A Metabolic Profiling Strategy for the Dissection of Plant Defense against Fungal Pathogens

Aliferis, K. A., Faubert, D., & Jabaji, S. (2014) · PLoS ONE · doi:10.1371/journal.pone.0111930 · Cited by 115

Toward Comprehensive Per- and Polyfluoroalkyl Substances Annotation Using FluoroMatch Software and Intelligent High-Resolution Tandem Mass Spectrometry Acquisition

Koelmel, J. P., Paige, M. K., Aristizabal‐Henao, J. J., Robey, N. M., Nason, S. L., Stelben, P., Li, Y., Kroeger, N., Napolitano, M. P., Savvaides, T., et al. (2020) · Analytical Chemistry · doi:10.1021/acs.analchem.0c01591 · Cited by 115

Flow Cytometry Has a Significant Impact on the Cellular Metabolome

Binek, A., Rojo, D., Godzien, J., Rupérez, F. J., Nuñez, V., Jorge, I., Ricote, M., Vázquez, J., & Barbas, C. (2018) · Journal of Proteome Research · doi:10.1021/acs.jproteome.8b00472 · Cited by 36

Establishing Reporting Standards for Metabolomic and Metabonomic Studies: A Call for Participation

Fiehn, O., Kristal, B. S., van Ommen, B., Sumner, L. W., Sansone, S., Taylor, C., Hardy, N. W., & Kaddurah‐Daouk, R. (2006) · OMICS A Journal of Integrative Biology · doi:10.1089/omi.2006.10.158 · Cited by 108

A decade after the metabolomics standards initiative it's time for a revision

Spicer, R., Salek, R. M., & Steinbeck, C. (2017) · Scientific Data · doi:10.1038/sdata.2017.138 · Cited by 113

Cancer metabolites: promising biomarkers for cancer liquid biopsy

Wang, W., Rong, Z., Wang, G., Hou, Y., Yang, F., & Qiu, M. (2023) · Biomarker Research · doi:10.1186/s40364-023-00507-3 · Cited by 113

Diversity and Distribution of Volatile Secondary Metabolites Throughout Bacillus subtilis Isolates

Kai, M. (2020) · Frontiers in Microbiology · doi:10.3389/fmicb.2020.00559 · Cited by 111

Modern methodologies and tools for human hazard assessment of chemicals

Authority, E. F. S. (2014) · EFSA Journal · doi:10.2903/j.efsa.2014.3638 · Cited by 109

Bioinformatic methods in NMR-based metabolic profiling

Ebbels, T. M. D., & Cavill, R. (2009) · Progress in Nuclear Magnetic Resonance Spectroscopy · doi:10.1016/j.pnmrs.2009.07.003 · Cited by 98

Analysis of complex mixtures using high-resolution nuclear magnetic resonance spectroscopy and chemometrics

McKenzie, J. S., Donarski, J., Wilson, J. C., & Charlton, A. J. (2011) · Progress in Nuclear Magnetic Resonance Spectroscopy · doi:10.1016/j.pnmrs.2011.04.003 · Cited by 98

Database Resources in Metabolomics: An Overview

Go, E. P. (2009) · Journal of Neuroimmune Pharmacology · doi:10.1007/s11481-009-9157-3 · Cited by 97

Networks and Graphs Discovery in Metabolomics Data Analysis and Interpretation

Amara, A., Frainay, C., Jourdan, F., Naake, T., Neumann, S., Novoa‐del‐Toro, E. M., Salek, R. M., Salzer, L., Scharfenberg, S., & Witting, M. A. (2022) · Frontiers in Molecular Biosciences · doi:10.3389/fmolb.2022.841373 · Cited by 106

PlantMetabolomics.org: A Web Portal for Plant Metabolomics Experiments

Bais, P., Moon, S. M., He, K., Leitao, R. M., Dreher, K. A., Walk, T., Sucaet, Y., Barkan, L., Wohlgemuth, G., Roth, M. R., et al. (2010) · PLANT PHYSIOLOGY · doi:10.1104/pp.109.151027 · Cited by 97

Current Challenges and Recent Developments in Mass Spectrometry–Based Metabolomics

Collins, S. L., Koo, I., Peters, J. M., Smith, P. B. W., & Patterson, A. D. (2021) · Annual Review of Analytical Chemistry · doi:10.1146/annurev-anchem-091620-015205 · Cited by 93

Lipidomics in situ: Insights into plant lipid metabolism from high resolution spatial maps of metabolites

Horn, P. J., & Chapman, K. D. (2014) · Progress in Lipid Research · doi:10.1016/j.plipres.2014.01.003 · Cited by 91

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Method comparison studies of telomere length measurement using qPCR approaches: A critical appraisal of the literature

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Generation of a Collision Cross Section Library for Multi-Dimensional Plant Metabolomics Using UHPLC-Trapped Ion Mobility-MS/MS

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Metabolomic strategies for aquaculture research: a primer

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Breathomics: Review of Sample Collection and Analysis, Data Modeling and Clinical Applications

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Advances in the integration of metabolomics and metagenomics for human gut microbiome and their clinical applications

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The potential of mass spectrometry imaging in plant metabolomics: a review

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DecoID improves identification rates in metabolomics through database-assisted MS/MS deconvolution

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Bioinformatics in bioscience and bioengineering: Recent advances, applications, and perspectives

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An Introduction to the Benchmarking and Publications for Non-Targeted Analysis Working Group

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DOI 10.1007/s11306-007-0070-6 BRIEF REPORT The metabolomics standards initiative (MSI)

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Metabolomics Standards Initiative (MSI)

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