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Infrared spectroscopy of proteins
Open accessAbstract
This review discusses the application of infrared spectroscopy to the study of proteins. The focus is on the mid-infrared spectral region and the study of protein reactions by reaction-induced infrared difference spectroscopy.
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“The Amide I normal mode of vibration is mainly to peptide-backbone C=O stretching (∼80 % of the mode) and N–H bending (∼20 % of the mode) adsorptions and it is highly sensitive to protein structural changes [57].”
From Ferritin adsorption onto chrysotile asbestos fibers influences the protein secondary structure (2024) · cites this paper as [57]
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“The two most common approaches to determine the secondary structure are: (i) fitting the amide I band with component bands [10,220,228] after identifying their position with band narrowing techniques [229 – 232] and (ii) decomposing the amide I band into basis spectra which have been calculated…”
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“The amide II band is weak or absent in the Raman spectrum [151].”
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“Probably the most common application of infrared spectroscopy in protein studies is the analysis of secondary structure [1,3,4,6,8 – 10, 221, 222 ].”
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“Page 16 of 34 Ac ce pt ed M an us cr ip t widely used absorption bands as structure probes for proteins are the amide I vibrations, which fall between 1690 and 1600 cm (Barth, 2007).”
BackgroundRoldán, M. L., Centeno, S. A., & Rizzo, A. (2014) · Journal of Raman Spectroscopy · doi:10.1002/jrs.4620 · Cited by 90
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“Particularly, among the protein absorption bands, the amide I absorption band offers a unique ability to identify different secondary structure motifs like disordered, α helix, β sheets, and β turns (38, 39).”
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“Secondary structures, α- helices, β- sheets, β- turn, and random coil, were assigned according to values reported elsewhere in the literature (Barth, 2007; Barth & Zscherp, 2002).”
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“As the correlation between amide II and secondary structure is less straightforward than for amide I vibration (Barth 2007), the amide I region was deconvoluted (Byler and Sui 1986) to determine the possibility for deeper analysis of this spectral region.”
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“40,41 Small di ff erences in the amide II region (1500 − 1580 cm − 1 ) related to the presence in KF8K of two additional lysine residues are also observed.”
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“In contrast to the position at ~1639 cm-1, the position at 1620-1625 cm-1 is more representative for extended β-sheet structures with stronger hydrogen bonds (Chirgadze and Nevskaya 1976, Krimm and Bandekar 1986, Barth 2007).”
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“[76] For proteins, the vibrational signatures of amide I (center frequency: 1620-1700 cm ), amide II (1500-1560 cm), and amide III (1200-1350 cm ) provide chemical identification and structural information.[112] As an example, Figure 10A shows S INS spectra of dried bovine serum albumin (BSA) and γ-globulin proteins d…”
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“The absorption region of amide I impacts the stretching vibration of the carbonyl group C=O chemical bond.”
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“[26, 27] The”
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“Amide I vibrations strongly absorb between 1600–1700 cm–1 and they are particular sensitive to the secondary structure adopted by the protein [5,6].”
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“Assignment of the principal IR absorption bond [4,19,30–32].”
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“…using methods such as second derivative and FSD (Fourier Self deconvolution) to expose the absorption spectrum corresponding to the specific type of secondary protein structure (Barth, 2007; Carbonaro & Nucara, 2010; Hashimoto & Kameoka, 2008; Lin, et al., 2009; Serdyuk, Zaccai, & Zaccai, 2007).”
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“10 1530–1560 C-N-H deformation, Amide II (proteins, chitin) [88, 89]”
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“…azide bands (at 2115 and 1319 cm−1), supporting partial consumption of available azides upon reaction with the alkynylated peptide, and (iii) intensity increase of the amide I and amide II bands (1640-1560 cm-1) (Andreas Barth, 2007), strongly supporting successful peptide grafting onto N3-CHIT.”
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Charge‐Induced Unzipping of Isolated Proteins to a Defined Secondary Structure
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“Additionally, it was also observed that the characteristic –OH/-NH stretching vibration peaks were reduced to lower wavenumbers 3064 cm-1,which indicated the formation of strong intermolecular hydrogen bonding in the treated sample [32,33].”
BackgroundPolyelectrolyte Polysaccharide–Gelatin Complexes: Rheology and Structure
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Gieroba, B., Sroka‐Bartnicka, A., Kazimierczak, P., Kalisz, G., Lewalska, A., Vivcharenko, V., Nowakowski, R., Pieta, I. S., & Przekora, A. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23115953 · Cited by 79
“In the ATR FT-IR spectrum (Figure 1B), a second derivative minimum at 2940 cm−1 is ascribed to C–H stretching [20]; 1635 cm−1 is ascribed to a β-sheet secondary structure in the amide I range [21], 1488 cm−1 is ascribed to aromatic C=C stretching, 1345 cm−1 is ascribed to OH deformation, 1173 cm−1 is ascribed to C–C r…”
BackgroundSu, X., Lin, H., Fu, B., Mei, S., Lin, M., Chen, H., Zheng, Z., Bo, H., Yang, D., & Lin, Y. (2022) · Food Chemistry · doi:10.1016/j.foodchem.2022.134813 · Cited by 79
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Sancataldo, G., Vetri, V., Foderà, V., Cara, G. D., Militello, V., & Leone, M. (2014) · PLoS ONE · doi:10.1371/journal.pone.0084552 · Cited by 79
Role of Polyalanine Domains in β‐Sheet Formation in Spider Silk Block Copolymers
Rabotyagova, O. S., Cebe, P., & Kaplan, D. L. (2009) · Macromolecular Bioscience · doi:10.1002/mabi.200900203 · Cited by 79
Wang, X., Ullah, N., Sun, X., Guo, Y. Q., Chen, L., Li, Z., & Feng, X. (2016) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2016.11.106 · Cited by 79
Ghimire, H., Venkataramani, M., Bian, Z., Liu, Y., & Perera, A. G. U. (2017) · Scientific Reports · doi:10.1038/s41598-017-17027-4 · Cited by 79
Yu, J., Wang, G., Wang, X., Xu, Y., Chen, S., Wang, X., & Jiang, L. (2018) · LWT · doi:10.1016/j.lwt.2018.01.031 · Cited by 79
Rios, N. S., Morais, E. G., Galvão, W. S., Neto, D. M. A., dos Santos, J. C. S., Bohn, F., Corrêa, M. A., Fechine, P. B. A., Fernández‐Lafuente, R., & Gonçalves, L. R. B. (2019) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2019.09.003 · Cited by 78
Field pea protein isolate/chitosan complex coacervates: Formation and characterization
Zhang, Q. R., Dong, H., Gao, J., Chen, L., & Vasanthan, T. (2020) · Carbohydrate Polymers · doi:10.1016/j.carbpol.2020.116925 · Cited by 78
Cortizas, A. M., & López‐Costas, O. (2020) · Scientific Reports · doi:10.1038/s41598-020-74993-y · Cited by 84
Wang, S., Li, X., Zhu, J., Liu, H., Liu, T., Yu, G., & Shao, M. (2021) · Journal of Agricultural and Food Chemistry · doi:10.1021/acs.jafc.1c01949 · Cited by 78
Fadimu, G. J., Gill, H. S., Farahnaky, A., & Truong, T. (2021) · Food and Bioprocess Technology · doi:10.1007/s11947-021-02700-4 · Cited by 78
“These bands are conformationally sensitive to protein secondary structure and any bending, vibration, or stretching of the functional groups in these regions following processing is an indication of alteration in protein secondary structure (Barth, 2007).”
BackgroundA 3D µPAD based on a multi-enzyme organic–inorganic hybrid nanoflower reactor
Ariza-Avidad, M., Salinas‐Castillo, A., & Capitán-Vallvey, L. F. (2015) · Biosensors and Bioelectronics · doi:10.1016/j.bios.2015.09.012 · Cited by 78
Niosome-loaded cold-set whey protein hydrogels
Abaee, A., & Madadlou, A. (2015) · Food Chemistry · doi:10.1016/j.foodchem.2015.09.037 · Cited by 78
Jacob, C. R., Luber, S., & Reiher, M. (2009) · The Journal of Physical Chemistry B · doi:10.1021/jp900354g · Cited by 78
New insights in mechanisms of bacterial inactivation by carvacrol
Ouazzou, A. A., Espina, L., Gelaw, T. K., Castellví, S. D. L., Pagán, R., & García‐Gonzalo, D. (2012) · Journal of Applied Microbiology · doi:10.1111/jam.12028 · Cited by 81
“6A) showed two spectral bands at 1624 and 1395 cm 1, corresponding to changes in the amide I absorption band of b-sheet proteins (Barth 2007; Kong and Yu 2007), and in the symmetric stretching of COO groups in amino acids and/or fatty acids (Legal et al. 1991; Belfer et al. 2005; Parikh and…”
BackgroundInfluentialForesti, M. L., Valle, G. M., Bonetto, R. D., Ferreira, M. L., & Briand, L. E. (2009) · Applied Surface Science · doi:10.1016/j.apsusc.2009.09.083 · Cited by 78
Cell Adhesion on Amyloid Fibrils Lacking Integrin Recognition Motif
Jacob, R. S., George, E., Singh, P. K., Salot, S., Arunagiri, A., Jha, N. N., Sen, S., & Maji, S. K. (2016) · Journal of Biological Chemistry · doi:10.1074/jbc.m115.678177 · Cited by 77
“To examine the secondary structure of the incubated PAAs, FTIR spectroscopy of these aggregates was performed (74).”
MethodOmidvar, Z., Parivar, K., Sanee, H., Amiri‐Tehranizadeh, Z., Baratian, A., Saberi, M. R., Asoodeh, A., & Chamani, J. (2011) · Journal of Biomolecular Structure and Dynamics · doi:10.1080/07391102.2011.10507382 · Cited by 77
Vibrational spectroscopy for cancer diagnostics
Old, O. J., Fullwood, L. M., Scott, R. A., Lloyd, G. R., Almond, M., Shepherd, N. A., Stone, N., Barr, H., & Kendall, C. A. (2014) · Analytical Methods · doi:10.1039/c3ay42235f · Cited by 77
Eixenberger, J. E., Anders, C. B., Hermann, R., Brown, R. J., Reddy, K. M., Punnoose, A., & Wingett, D. (2017) · Chemical Research in Toxicology · doi:10.1021/acs.chemrestox.7b00136 · Cited by 79
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“2016; Barth 2007; Salunkhe et al.”
Metadata
- Authors
- Barth, A.
- Affiliations
- Stockholm University (SE)
- Corresponding author
- Barth, Andreas
- ORCID
- Barth, Andreas
- Venue
- Biochimica et Biophysica Acta (BBA) - Bioenergetics
- Publisher
- Elsevier BV
- Published
- 2007-09
- Volume
- 1767
- Issue
- 9
- Pages
- 1073-1101
- ISSN
- 0005-2728 (ISSN-L)
- OpenAlex
- W1992045220
- Cited by
- 5,129
- References
- 444
- Citations by year
- 2026: 521 · 2025: 475 · 2024: 403 · 2023: 406 · 2022: 407 · 2021: 427 · 2020: 465 · 2019: 357 · 2018: 311 · 2017: 313 · 2016: 237 · 2015: 187 · 2014: 148 · 2013: 132 · 2012: 97
- FWCI
- 3.85
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Biochimica et Biophysica Acta (BBA) - Bioenergetics (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Biophysics › Spectroscopy Techniques in Biomedical and Chemical Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
- Physical Sciences › Physics and Astronomy › Atomic and Molecular Physics, and Optics › Spectroscopy and Quantum Chemical Studies
- Keywords
- infrared spectroscopy, proteins, mid-infrared spectra, protein reactions, protein structure
- MeSH terms
- Amides, Amino Acids, Enzymes, Hydrogen Bonding, Hydrogen-Ion Concentration, Models, Chemical, Molecular Conformation, Oscillometry, Oxidation-Reduction, Proteins, Protons, Spectrophotometry, Infrared, Time Factors, Water, Protein Structure, Secondary, Spectroscopy, Fourier Transform Infrared
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